89150a8298312f2cc4b69809a65a947cd80a2035 lrnassar Fri Jun 5 10:14:23 2026 -0700 Seed the remaining 12 Recommended Track Set files under htdocs/data/recTrackSets/ for Chris's file-based loader. All fetched from RR via rtsUpdate fetch with the final scrub list (eaa7ebfc733). Per-session counts (source vars -> kept after scrub): hg19 CNVs%20Clinical 701->615, Non%20coding%20SNVs 630->572, Exon_Relevance_hg19 977->891, Problematic%20Regions 241->189, BRCA1_BRCA2_ENIGMA_hg19 759->672 (includes the stray ' hgsid=' artifact now caught by the whitespace-key check), insightVcepHg19 210->182; hg38 Clinical_SNVs_hg38 707->625, Clinical_CNVs_hg38 723->640, Exon_Relevance_hg38 962->879, Problematic_Regions_hg38 311->272, BRCA1_BRCA2_ENIGMA_hg38 808->721, insightVcepHg38 266->240. With this, every entry in recTrackSets.{hg19,hg38}.tab has a corresponding file; the namedSessionDb fallback path is no longer needed for these sessions. refs #32768 diff --git src/hg/htdocs/data/recTrackSets/hg19/insightVcepHg19 src/hg/htdocs/data/recTrackSets/hg19/insightVcepHg19 new file mode 100644 index 00000000000..35c2dcbe348 --- /dev/null +++ src/hg/htdocs/data/recTrackSets/hg19/insightVcepHg19 @@ -0,0 +1,182 @@ +Enhancers=dense +Max_counts_multiwig=full +TSS_activity_TPM=dense +Total_counts_multiwig=full +abSplice=dense +affyExonArray=pack +assumesHub=7210419=https%3A%2F%2Fhgdownload.soe.ucsc.edu%2Fhubs%2Finsight%2Fhub.txt +augustusGene=pack +avada=hide +bayesDel=full +cadd1_7=dense +cadd1_7_Del=dense +cadd1_7_Ins=dense +cadd=dense +caddDel=dense +caddIns=dense +cartVersion=9 +clade=mammal +clinvar=pack +clinvarCnv_sel=0 +clinvarMain.filterBy._allTypeCode=All +clinvarMain.filterBy._clinSignCode=All +clinvarMain.filterBy._originCode=All +clinvarMain.filterBy.molConseq=All +clinvarMain_imgOrd=8 +clinvarMain_sel=1 +clinvarSubLolly_imgOrd=9 +cons100way=hide +covidHgiGwasR4Pval=pack +covidMuts=pack +cpgIslandExt=pack +crispr10KRanges=dense +crispr10KTargets=pack +crisprRanges=dense +crisprTargets=dense +cytoBandIdeo=hide +db=hg19 +dbSnp153Composite=pack +dbSnp155Composite=hide +dbVar_common=pack +dbVar_conflict=pack +decipher=pack +decipherPopulation=pack +decipherSnvs=pack +defaultsSet=on +displaySubtracks=all +encTfChipPk=dense +enhancer_promoter_correlations_distances_cell_type=squish +expOrder_clinvar=clinvarMain+ +expOrder_cons100way=phyloP100wayAll+ +expOrder_hub_190522_HCIpriors=hub_190522_HCIpriors+ +expOrder_hub_190522_grpAF=hub_190522_grpAF+ +expOrder_wgEncodeReg=wgEncodeRegMarkH3k27ac+ +fetalGeneAtlasCellType=pack +gnomadCoverage=dense +gnomadExomes=squish +gnomadGenomes=squish +gnomadMpc=pack +gnomadPLI=pack +gnomadPext=full +gnomadStructuralVariants=dense +gtexGeneV8=hide +hgHubConnect.hub.7210419=1 +hgtgroup_compGeno_close=0 +hgtgroup_denisova_close=1 +hgtgroup_expression_close=0 +hgtgroup_genes_close=0 +hgtgroup_hub_190522_close=0 +hgtgroup_hub_7210419_close=0 +hgtgroup_map_close=1 +hgtgroup_neandertal_close=1 +hgtgroup_phenDis_close=0 +hgtgroup_pub_close=0 +hgtgroup_regulation_close=0 +hgtgroup_rep_close=0 +hgtgroup_rna_close=0 +hgtgroup_varRep_close=0 +hgtgroup_visible_close=0 +hgtgroup_x_close=1 +hmc=full +hub_7210419_HCIpriors_imgOrd=5 +hub_7210419_clinDomains_imgOrd=2 +hub_7210419_functionalAssays_imgOrd=6 +hub_7210419_grpAF_imgOrd=4 +hub_7210419_insightCuratedVars_imgOrd=7 +hub_7210419_pvs1_imgOrd=3 +humanMethylationAtlasSignals=full +humanMethylationAtlasSummary=pack +jarvis=dense +knownGene=hide +knownGeneKent=pack +knownGeneV45lift37=pack +knownGeneV47lift37=pack +knownGeneV48lift37=pack +lincRNAsAllCellTypeTopView=dense +lincRNAsTranscripts=pack +linsight=full +mastermind=hide +mcap=full +metaDome=full +mexbb=pack +mgcFullMrna=pack +mtrScores=full +mutScore=full +ncbiRefSeqCurated_sel=0 +ncbiRefSeqSelect_imgOrd=1 +ncbiRefSeqSelect_sel=1 +omimContainer=hide +omimGene2=dense +orfeomeMrna=pack +org=Human +patchesPsl=hide +primateAi=dense +prsEmerge=dense +pubs=hide +pubtator=pack +pubtator_imgOrd=10 +refSeqComposite.label.gene=1 +refSeqComposite=pack +rmsk=hide +robustPeaks=dense +ruler_imgOrd=0 +sgdp=pack +simOrder_clinvar=clinvarMain+ +simOrder_cons100way=phyloP100wayAll+ +simOrder_hub_190522_HCIpriors=hub_190522_HCIpriors+ +simOrder_hub_190522_grpAF=hub_190522_grpAF+ +simOrder_wgEncodeReg=wgEncodeRegMarkH3k27ac+ +skinSoleBoldoCellType=pack +spliceAI=dense +starita=hide +targetScanMiRnaSitesV72=pack +tgpPhase3=pack +tgpPhase3Accessibility=pack +trackHubs=7210419 +transMapEnsemblV4=pack +transMapEnsemblV5=pack +transMapEnsemblV6=pack +transMapRefSeqV4=pack +transMapRefSeqV5=pack +transMapRefSeqV6=pack +transMapRnaV4=pack +ukbDepletion=dense +varChat=hide +varaico=pack +varaicoSuppl=hide +varaico_imgOrd=11 +varsInPubs=show +wgEncodeAwgDnaseCombinedFootprint=dense +wgEncodeAwgDnaseMasterSites=dense +wgEncodeAwgDnaseUniform=dense +wgEncodeAwgTfbsUniform=dense +wgEncodeBroadHistone=dense +wgEncodeBroadHmm=dense +wgEncodeCaltechRnaSeq=dense +wgEncodeCshlLongRnaSeq=dense +wgEncodeGencodeV49lift37=pack +wgEncodeGisChiaPet=dense +wgEncodeGisRnaSeq=dense +wgEncodeHaibMethyl450=dense +wgEncodeHaibMethylArray=dense +wgEncodeHaibMethylRrbs=dense +wgEncodeHaibMethylSeq=dense +wgEncodeHaibRnaSeq=dense +wgEncodeOpenChromDnase=dense +wgEncodeOpenChromFaire=dense +wgEncodeOpenChromSynth=dense +wgEncodeReg=hide +wgEncodeRegDnaseClusteredV1=dense +wgEncodeRegDnaseClusteredV2=dense +wgEncodeRegMarkH3k27ac=full +wgEncodeSunyAlbanyGeneSt=dense +wgEncodeSunyAlbanyTiling=dense +wgEncodeSunyRipSeq=dense +wgEncodeSydhHistone=dense +wgEncodeSydhRnaSeq=dense +wgEncodeUmassDekker5C=dense +wgEncodeUmassWengTfbsValid=dense +wgEncodeUw5C=dense +wgEncodeUwDgf=dense +wgEncodeUwDnase=dense +wgEncodeUwHistone=dense