198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index b15951eec37..db31eb32c9f 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1475,31 +1475,31 @@ <strong>contigFa.zip:</strong> The assembly sequence contigs, in one file per contig. All contigs are in forward orientation relative to the chromosome. In some cases, this means that contigs will be reversed relative to their orientation in the NCBI assembly. Repeats are shown in lower case; non-repeating sequence is shown in upper case.</li> <li> <strong>contigFaMasked.zip:</strong> The assembly sequence contigs, in one file per contig. Repeats are masked by capital <em>N</em>s; non-repeating sequence is shown in upper case.</li> <li> <strong>contigOut.zip:</strong> RepeatMasker <em>.out</em> file for contigs, generated by RepeatMasker at the <em>-s</em> sensitive setting.</li> <li> <strong>contigTrf.zip:</strong> Tandem Repeats Finder locations, filtered to keep repeats with period less than or equal to 12, and translated into one <em>.bed</em> file per contig.</li> <li> <strong>database.zip:</strong> The Genome Browser database as tab-delimited files and associated - MariaDB (MySQL) table-creation tiles (eliminated in later assemblies due to size restrictions).</li> + MariaDB (MySQL) table-creation files (eliminated in later assemblies due to size restrictions).</li> <li> <strong>est.fa.zip:</strong> Sequences of all GenBank ESTs for the selected species.</li> <li> <strong>liftAll.zip:</strong> The offsets of contigs within chromosomes.</li> <li> <strong>mrna.zip:</strong> mRNAs in GenBank from the selected species.</li> <li> <strong>refmrna.zip:</strong> RefSeq mRNAs from the selected species.</li> <li> <strong>upstream1000.zip:</strong> Sequences 1000 bases upstream of annotated transcription start of RefSeq genes. This includes only cases where the transcription start is annotated separately from the coding region start.</li> <li> <strong>upstream2000.zip:</strong> Same as upstream1000, but with 2000 bases.</li> <li>