198c9b8daecc44fbda6a6494c566c723920f030a
lrnassar
Wed Mar 11 18:25:21 2026 -0700
Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM.
diff --git src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
index 26bcfaeab4e..680bc44a5c2 100755
--- src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
+++ src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
@@ -32,45 +32,45 @@
points in the current view, select the "Auto-scale to data view" option. To keep the
y=0 value in view at all times when Auto-scale is selected, set "Always include
zero" to "ON".
- When viewing signal tracks within a composite group use
"group auto-scale" to enable having all tracks scaled against the one track
in the group that has the highest maximum data points in the current view.
For example, below is a side-by-side image of two views of the same data from a selection
of cell lines within a composite of related RNA-seq experiments. On the left is the
original "auto-scale to data view" setting, where each track is auto-scaled
to appear at each track's highest value. And on the right is the new "group
auto-scale" setting for the same RNA-seq data where all tracks are scaled against
the one track in the region that has the highest value (67215 for IMR9 cell TAP + 1).
Click this link to interact with the original "auto-scale to data view" on
+ target="_blank">link to interact with the original "auto-scale to data view" on
the left, and to contrast the results with the new "group auto-scale" click this
link.
- - Note that the "group auto-scale" setting is meant to be turned on and off at the
+
- Note that the "group auto-scale" setting is meant to be turned on and off at the
composite group track set level, but you can toggle individual tracks. For instance,
click the second "group auto-scale" session
link that has all tracks adjusted to
the highest value (67215 for IMR9 cell TAP + 1). If you right-click that individual highest track
and instead of configuring the track set, select to configure only the subtrack IMR9 cell TAP + 1
from "group auto-scale" to "auto-scale to data view" and select OK
and then refresh your browser window (or click one of the "refresh" buttons on the
screen) you will see all the tracks adjust to the next-highest track within all tracks
- still tagged to display "group auto-scale" (39320 for IMR9 cell + 1).
+ still tagged to display "group auto-scale" (39320 for IMR9 cell + 1).
Vertical viewing range (boxed in red): The min and max values specify the vertical portion of
the graph that is displayed (default range is 30-70). These numbers can be used to set data
threshold indicators. For example, to display only those GC values greater than 50 percent, set
the min value to "50".
Transform function: Transforms the data points by the function selected in the
drop-down menu. Usually the default setting is "None".
Windowing function: When a view is too large to show individual data values, the
values must be combined to produce a plot point. This option specifies the combining function to
be used (default is "Mean"):
