198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html index 58dd48fb4b3..fc63fb7ec17 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html @@ -57,31 +57,31 @@ displays:
curl -I http://yourURL/hub.txt

Now that you have the assembly hub copied from above, you can copy the directory and start to edit some of the documents such as genomes.txt, groups.txt, and trackDb.txt to understand how they work. Refer to the Assembly Hub User Guide to understand how to build a twoBit file for your own original fasta files. Read more about trackDb settings in the definition document.

Assembly hubs also support chromAlias and chromAuthority, which let the Browser map chromosome names across different naming schemes and display a preferred convention. A default naming scheme can be set using the chromAuthority setting.

-This assembly hub is a an abbreviated version of a larger plant assembly Public Hub. You can +This assembly hub is an abbreviated version of a larger plant assembly Public Hub. You can explore the larger hub structure here.

Please note that the Browser waits 5 minutes before checking for any changes to these files. When editing hub.txt, genomes.txt, trackDb.txt, and related hub files, shorten this delay by adding udcTimeout=1 to your URL. For more information, please see the Debugging and Updating Track Hubs section of the Track Hub User Guide. Also, for more detailed instructions on setting up a regular hub, please see the Setting Up Your Own Track Hub section of the Track Hub User Guide.

Setting up Blat and In-Silico PCR for an Assembly Hub

By running gfServers from your institution, you can enable blat on your assembly hubs. See Starting Blat and In-Silico PCR for an Assembly Hub for details.