53ab3f1e293a91ddf71ec7568f4a6ff827bcd278 lrnassar Fri Oct 2 13:52:36 2026 -0700 Native GPN-Star track (Ye, Benegas et al., Nature 2026) on hg38, mm39, galGal6, dm6 and ce11, from the authors' Hugging Face hub. Each model is a multiWig sequence logo plus a four-allele -LLR composite using negateValues. The three hg38 models (V/M/P) sit in predictionScoresSuper via human/gpnStar.ra with /gbdb/$D bigDataUrls so -strict drops them on other human assemblies; the other four get a standalone gpnStar superTrack. The authors' bigWigs come from pyBigWig, whose bwAddIntervalSpanSteps writes the last section of each run 6 bases too long (pyBigWig #166) and makes bigWigAverageOverBed and bigWigCorrelate abort, so gpnStarRebuild.sh re-encodes them with wigToBigWig and gpnStarVerify.sh checks every per-base value is unchanged. Entropy scores and the GenArk-only Arabidopsis set are left out, and pennantIcon still has #TBD placeholders for the newsarch anchor and date. refs #38451 diff --git src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra index f07122ff079..ea654933584 100644 --- src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra +++ src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra @@ -42,15 +42,17 @@ track spMut override group varRep bigDataUrl /gbdb/$D/uniprot/unipMut.bb include ../../refSeqComposite.ra include trackDb.124way.ra include trackDb.124wayMafNet.ra include trackDb.124wayRbest.ra include trackDb.124waySyn.ra include chainNetInsects.ra include chainNetSynInsects.ra include chainNetRBestInsects.ra include ../../crispr10K.ra alpha include reMap.ra + +include gpnStar.ra alpha