e1b75109b63da525f8d7bf0da81a3c13a81ffc0a
lrnassar
Wed Apr 1 09:21:29 2026 -0700
Squashing old pennantIcons, no RM.
diff --git src/hg/makeDb/trackDb/evaSnp.ra src/hg/makeDb/trackDb/evaSnp.ra
index cf459044ccd..c4bae15c13a 100644
--- src/hg/makeDb/trackDb/evaSnp.ra
+++ src/hg/makeDb/trackDb/evaSnp.ra
@@ -1,23 +1,22 @@
track evaSnpContainer
shortLabel EVA SNP
longLabel Short Genetic Variants from European Variant Archive
group varRep
type bigBed 9 +
compositeTrack on
visibility dense
-pennantIcon Updated red ../goldenPath/newsarch.html#121925 "New EVA SNP Release 8 track Dec. 19, 2025"
track evaSnp
shortLabel EVA SNP Release 3
longLabel Short Genetic Variants from European Variant Archive Release 3
type bigBed 9 +
parent evaSnpContainer off
itemRgb on
mouseOver Ref/Alt allele(s): $ref>$alt
Var type: $ucscClass
AA change: $aaChange
bigDataUrl /gbdb/$D/bbi/evaSnp.bb
url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
filterLabel.varClass Variant class from EVA SO term
filterLabel.ucscClass Functional effect per UCSC Variant Annotation
filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
filterType.ucscClass multipleListOnlyOr
@@ -138,21 +137,20 @@
visibility dense
itemRgb on
mouseOver Ref/Alt allele(s): $ref>$alt
Var type: $ucscClass
AA change: $aaChange
bigDataUrl /gbdb/$D/bbi/evaSnp8.bb
url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
filterLabel.varClass Variant class from EVA SO term
filterLabel.ucscClass Functional effect per UCSC Variant Annotation
filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
filterType.ucscClass multipleListOnlyOr
filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
filterLabel.itemRgb General variant types by color grouping
maxWindowCoverage 250000
maxItems 1000000
html evaSnpContainer
-pennantIcon New red ../goldenPath/newsarch.html#121925 "Released Dec. 19, 2025"
searchTable evaSnp8
searchType bigBed
searchMethod exact
padding 2