198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/clinvar.html src/hg/makeDb/trackDb/human/clinvar.html index 2aeb84fa183..c4859f31a46 100644 --- src/hg/makeDb/trackDb/human/clinvar.html +++ src/hg/makeDb/trackDb/human/clinvar.html @@ -129,44 +129,44 @@ mitochondrial genome "chrM" that was not the same as the one later used for most databases like ClinVar. As a result, we added the official mitochondrial genome in 2020 as "chrMT", and all mitochondrial annotations of ClinVar and most other databases are shown on the mitochondrial genome called "chrMT". For a full description of the issue of the mitochondrial genome in hg19, please see the hg19 README file on our download site.
ClinVar tries to publish a new release on the first Thursday of every month. In practice, the exact day can move by a few days. -Our track updated on the day after any ClinVar release, and copied to our public site one day later. +Our track is updated on the day after any ClinVar release, and copied to our public site one day later. The exact date of our last update is shown on the track configuration page. You can find the previous versions of the track organized by month on our downloads server in the archive directory. To display a previous version of the track, paste the URL to one of the older files into the custom track text input field under "My Data > Custom Tracks".
The raw data can be explored interactively with the Table Browser or the Data Integrator. The data can be accessed from scripts through our API, the track names are -"clinVarMain and "clinVarCnv". +"clinVarMain" and "clinVarCnv".
For automated download and analysis, the genome annotation is stored in a bigBed file that can be downloaded from our download server. The files for this track are called clinvarMain.bb and clinvarCnv.bb. Individual regions or the whole genome annotation can be obtained using our tool bigBedToBed, which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found here. The tool can also be used to obtain only features within a given range, e.g. bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/clinvar/clinvarMain.bb -chrom=chr21 -start=0 -end=100000000 stdout