198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/hg17/cnp.html src/hg/makeDb/trackDb/human/hg17/cnp.html index e26997edb24..d0140b6b60b 100644 --- src/hg/makeDb/trackDb/human/hg17/cnp.html +++ src/hg/makeDb/trackDb/human/hg17/cnp.html @@ -254,31 +254,31 @@ genetic polymorphism. </P> <H3>Conrad genotype analysis</H3> <P> The authors first tested 12 predicted deletions using quantitative PCR. For all 12 deletions, DNA concentrations consistent with transmission of a deletion from parent to child were observed. <P>To provide more extensive validation by comparative genome hybridization (CGH), the authors designed a custom oligonucleotide microarray comprised of 380,000 probes that tile across all 134 candidate deletions identified in 9 HapMap offspring (8 YRI and 1 CEU). The results of this CGH analysis indicate that the majority (about 85%) of candidate deletions detected by the method are real. <H3>Redon analysis of HapMap data</H3> -The authors utilized numerous quality meaures, including +The authors utilized numerous quality measures, including repeated experiments on the WGTP array for 82 individual and on the 500K EA array for 15 individuals. The average false-positive rate per experiment was held beneath 5%. Aberrant chromosomes were removed from the analysis. Further details are available in the Nature paper cited below. <H2>References</H2> <P> Conrad, D., Andrews, T.D., Carter, N.P., Hurles, M.E., Pritchard, J.K. <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16327808&query_hl=1" TARGET=_blank>A high-resolution survey of deletion polymorphism in the human genome</A>. <em>Nature Genet</em> <B>38</B>(1), 75-81 (2006). </P> <P> Hinds, D., Kloek, A.P., Jen, M., Chen, X., Frazer, K.A. <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16327809&query_hl=1" TARGET=_blank>Common deletions and SNPs are in linkage disequilibrium in the human genome</A>. <em>Nature Genet</em> <B>38</B>(1), 82-85 (2006). </P>