198c9b8daecc44fbda6a6494c566c723920f030a
lrnassar
  Wed Mar 11 18:25:21 2026 -0700
Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM.

diff --git src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
index e56edd96759..ad7b5374894 100644
--- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
+++ src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
@@ -40,31 +40,31 @@
 utility.  This annotation was generated by the ENCODE Data Coordination
 Center at UCSC.</DD>
 </DL>
 </p>
 
 <a name="Methods"></a><h2>Methods</h2>
 
 <P>
 Cells were grown according to the approved
 <A HREF="/ENCODE/protocols/cell" TARGET=_BLANK>ENCODE cell culture protocols</A>.
 Briefly, cross-linked chromatin was immunoprecipitated with antibody, the
 protein:DNA crosslinks were reversed and the DNA fragments were recovered
 and sequenced.  Because these experiments were carried out over the course
 of two years, several changes and improvements were made to the original
 protocol (see Johnson DS, <em>et al</em>. 2007).  The major differences between
-protocols are the number of cells and magnetic beads used for IP, the the
+protocols are the number of cells and magnetic beads used for IP, the
 method of sonication used to fragment DNA, and the number of cycles of PCR
 used to amplify the sequencing library.  The most current protocol used by
 the Myers Lab can be found
 <a href="http://hudsonalpha.org/myers-lab/protocols"
 TARGET=_blank title="http://hudsonalpha.org/myers-lab/protocols">
 here</a>. The sequencing libraries labeled as PCR2x were
 made with two rounds of amplification (25 and 15 cycles) and those labeled
 as PCR1x were made with one 15-cycle round of amplification.  Biological
 replicates from each experiment were completed.  For specific details on the
 protocol used for a ChIP of interest (number of cells, DNA fragmentation and
 sequencing library construction), please contact the Myers Lab at the contact
 information provided below.
 </P><P>
 Libraries were sequenced with an Illumina Genome Analyzer I or an Illumina
 Genome Analyzer IIx according to the manufacturer's recommendations.  Sequence