198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/hg19/gnomad.html src/hg/makeDb/trackDb/human/hg19/gnomad.html index ed4016e50bd..d6914d7ac79 100644 --- src/hg/makeDb/trackDb/human/hg19/gnomad.html +++ src/hg/makeDb/trackDb/human/hg19/gnomad.html @@ -38,31 +38,31 @@ on 10,847 unrelated genomes.</li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=gnomadPLI"><strong>Predicted Constraint Metrics (gnomAD Constraint Metrics)</strong></a> - Contains metrics of pathogenicity per-gene as predicted for gnomAD v2.1.1.</li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=gnomadMpc"> <strong>Missense Deleteriousness Prediction by Constraint (MPC)</strong></a> - Regions of transcripts (not entire transcripts) that show enrichment of missense mutations.</li></ul> </p> <h2>Display Conventions</h2> <p> These tracks are multi-view composite tracks that contain multiple data types (views). Each view within a track has separate display controls, as described <a target="_blank" href="https://genome.ucsc.edu/goldenPath/help/multiView.html">here</a>. Most gnomAD tracks contain multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some -subracks will be displayed by default. The user can select which subtracks are displayed via the +subtracks will be displayed by default. The user can select which subtracks are displayed via the display controls on the track details page. </p> <h2>Data Access</h2> <p> The raw data can be explored interactively with the <a target="_blank" href="../cgi-bin/hgTables"> Table Browser</a>, or the <a target="_blank" href="../cgi-bin/hgIntegrator">Data Integrator</a>. For automated analysis, the data may be queried from our <a target="_blank" href="/goldenPath/help/api.html">REST API</a>, and the genome annotations are stored in files that can be downloaded from our <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/gnomAD/" target="_blank">download server</a>, subject to the conditions set forth by the gnomAD consortium (see below). Coverage values for the genome are in <a target="_blank" href="../goldenPath/help/bigWig.html">bigWig</a> files in the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.</p> <p>