198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html index 34dccc967bb..657fff5c969 100644 --- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html +++ src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html @@ -114,31 +114,31 @@ factor targeted, antibody used, cell type, treatment (if any), and laboratory source. The second list field (expScores) contains the scores for the corresponding experiments. For convenience, the file downloads directory for this track also contains a BED file, wgEncodeRegTfbsClusteredWithCellsV3, that lists each cluster with the cluster score followed by a comma-separated list of cell types.

The Factorbook motif positions that display as green boxes on the track come from an additional table called factorbookMotifPos, and are supported by additional metadata tables such as factorbookMotifCanonical that connects different terms used for the same factor (RELA <--> NFKB1), and factorbookGeneAlias -that connects terms to the the link used at factorbook.org (EGR1 <--> +that connects terms to the link used at factorbook.org (EGR1 <--> EGR-1), and lastly a position weight matrix table, factorbookMotifPwm, used in building the graphical sequence logo for each motif on the item details page. These tables are available on our public MySQL server and as files on our download server.

Credits

This track shows ChIP-seq data from the Myers Lab at the HudsonAlpha Institute for Biotechnology and by the labs of Michael Snyder, Mark Gerstein,