198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html index 34dccc967bb..657fff5c969 100644 --- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html +++ src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html @@ -114,31 +114,31 @@ factor targeted, antibody used, cell type, treatment (if any), and laboratory source. The second list field (expScores) contains the scores for the corresponding experiments. For convenience, the <a href="http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeRegTfbsClustered/"> file downloads directory</a> for this track also contains a BED file, <em>wgEncodeRegTfbsClusteredWithCellsV3</em>, that lists each cluster with the cluster score followed by a comma-separated list of cell types. </p> <p> The <a target=_blank href="http://v1.factorbook.org/mediawiki/index.php/Welcome_to_factorbook">Factorbook</a> motif positions that display as green boxes on the track come from an additional table called <em>factorbookMotifPos</em>, and are supported by additional metadata tables such as <em>factorbookMotifCanonical</em> that connects different terms used for the same factor (RELA <--> NFKB1), and <em>factorbookGeneAlias</em> -that connects terms to the the link used at factorbook.org (EGR1 <--> +that connects terms to the link used at factorbook.org (EGR1 <--> <a href="http://v1.factorbook.org/mediawiki/index.php/EGR-1" target="_blank">EGR-1</a>), and lastly a position weight matrix table, <em>factorbookMotifPwm</em>, used in building the graphical sequence logo for each motif on the item details page. These tables are available on our <a href="/goldenPath/help/mysql.html" target="_blank">public MySQL server</a> and as files on our <a href="http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/" target="_blank">download server</a>. </p> <h2>Credits</h2> <p> This track shows ChIP-seq data from the <a href='http://archive.hudsonalpha.org/myers-lab' target="_blank">Myers Lab</a> at the <a href="https://hudsonalpha.org/" target="_blank">HudsonAlpha Institute for Biotechnology</a> and by the labs of <a href="https://med.stanford.edu/snyderlab.html" target="_blank">Michael Snyder</a>, <a href="http://bioinfo.mbb.yale.edu/" target="_blank">Mark Gerstein</a>,