198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/human/hg38/cons100way.html src/hg/makeDb/trackDb/human/hg38/cons100way.html index 1c5a039e740..fa4005fdd48 100644 --- src/hg/makeDb/trackDb/human/hg38/cons100way.html +++ src/hg/makeDb/trackDb/human/hg38/cons100way.html @@ -194,31 +194,31 @@ target=_blank>Graph configuration help</a> link for an explanation of the configuration options.</p> <p> Pairwise alignments of each species to the $organism genome are displayed below the conservation histogram as a grayscale density plot (in pack mode) or as a wiggle (in full mode) that indicates alignment quality. In dense display mode, conservation is shown in grayscale using darker values to indicate higher levels of overall conservation as scored by phastCons. </p> <p> Checkboxes on the track configuration page allow selection of the species to include in the pairwise display. The names of selected species are colored according to their clade, alternating between blue and green. Note that excluding species from the pairwise display does not alter the -the conservation score display.</p> +conservation score display.</p> <p> To view detailed information about the alignments at a specific position, zoom the display in to 30,000 or fewer bases, then click on the alignment.</p> <h3>Gap Annotation</h3> <p> The <em>Display chains between alignments</em> configuration option enables display of gaps between alignment blocks in the pairwise alignments in a manner similar to the Chain track display. The following conventions are used: <ul> <li><b>Single line:</b> No bases in the aligned species. Possibly due to a lineage-specific insertion between the aligned blocks in the $organism genome or a lineage-specific deletion between the aligned blocks in the aligning