3d416983a22ec1b123e9951e3511cdcec36df0b2 lrnassar Mon Dec 1 15:20:30 2025 -0800 More feedback from Zhiping, refs #34109 diff --git src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra index fb7a5cd26ed..1e0a4f1e2eb 100644 --- src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra +++ src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra @@ -16,18 +16,18 @@ pennantIcon snowflake.png ../goldenPath/newsarch.html#XXXXXX "This data represents ENCODE3 cCREs. For the latest data, see the ENCODE4 cCREs track." track cCREregistry shortLabel ENCODE4 cCREs longLabel ENCODE4 Registry of candidate Cis-Regulatory Elements (cCREs) type bigBed 9 + 5 bigDataUrl /gbdb/$D/encode4/ccre/encodeCcreRegistry.bb visibility dense priority 1 filterValues.cCRE_class CA|Chromatin accessibility (CA),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhance|Proximal enhance,Promoter|Promoter,TF|Transcription factor (TF) parent cCREs filterType.cCRE_class multipleListOr mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Max-Z: ${DNase_maxZ}
H3K4me3 Max-Z: ${H3K4me3_maxZ}
H3K27ac Max-Z: ${H3K27ac_maxZ}
CTCF Max-Z: ${CTCF_maxZ} url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ urlLabel cCRE details on SCREEN: -dataVersion ENCODE Registry version 4, 2024. (ENCODE4 data includes ENCODE2 and ENCODE3) +dataVersion ENCODE Registry version 4, 2024. (ENCODE4 data includes ENCODE2, ENCODE3, and the Roadmap Epigenomics Project) include encode4.ccres.ra