ab234fe62907c81b702a63f5a73d40500a40916f
lrnassar
Tue Sep 29 16:12:28 2026 -0700
Fiber-seq: give the FIRE peak subtracks "visibility dense" instead of
"onlyVisibility dense", so their mouseOver can actually be seen.
onlyVisibility pins a faceted child rather than defaulting it:
tdbVisLimitedByAncestors() in hg/lib/hui.c overwrites the computed visibility
with the pinned mode, so a request for pack or full was discarded even from
the URL, and the dropdown offered only hide and dense. Since no bigBed-like
track draws per-item map boxes in dense, the mouseOver on all 41 peak stanzas
was dead config and fiberSeqCompendium.html was promising a hover nobody could
reach. Measured at ACTB with the map_data image map: pinned, a forced pack
still computed to dense with 0 FIRE tooltips; defaulted, pack and full compute
correctly and carry 8. Peaks still come up dense, which is what Andrew asked
for in July. The signal types keep onlyVisibility, where pinning to full
costs nothing because a bigWig draws the same at pack and full, and that is
verified here too: acc, cpg and hap stay at full whatever is requested, and
the container stays hidden on a fresh cart. Also fixes two makeDoc slips, the
facet notes naming the script's dict keys rather than the column headings
writeMetadata() emits, and the opening summary still saying accessibility and
CpG "both became faceted composites" when they were merged into one 235 lines
later. Caught by Claude review of 156d289 and 5179d7f. refs #38407
diff --git src/hg/makeDb/trackDb/human/hg38/fiberSeq.ra src/hg/makeDb/trackDb/human/hg38/fiberSeq.ra
index 127bcf7a515..86693766c11 100644
--- src/hg/makeDb/trackDb/human/hg38/fiberSeq.ra
+++ src/hg/makeDb/trackDb/human/hg38/fiberSeq.ra
@@ -117,31 +117,31 @@
priority 1
track fiberSeqCompendium_PM00001_peaks
parent fiberSeqCompendium on
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00001/fire-peaks.ucsc.bb
shortLabel GM12878 Peaks
longLabel GM12878 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM12878 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 2
track fiberSeqCompendium_PM00001_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM12878 Hap1/2
longLabel GM12878 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -282,31 +282,31 @@
priority 11
track fiberSeqCompendium_PM00002_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00002/fire-peaks.ucsc.bb
shortLabel HG002 Peaks
longLabel HG002 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG002 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 12
track fiberSeqCompendium_PM00002_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG002 Hap1/2
longLabel HG002 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -447,31 +447,31 @@
priority 21
track fiberSeqCompendium_PM00004_peaks
parent fiberSeqCompendium on
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00004/fire-peaks.ucsc.bb
shortLabel K562 Peaks
longLabel K562 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver K562 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 22
track fiberSeqCompendium_PM00004_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel K562 Hap1/2
longLabel K562 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -612,31 +612,31 @@
priority 31
track fiberSeqCompendium_PM00005_peaks
parent fiberSeqCompendium on
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00005/fire-peaks.ucsc.bb
shortLabel HepG2 Peaks
longLabel HepG2 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HepG2 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 32
track fiberSeqCompendium_PM00005_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HepG2 Hap1/2
longLabel HepG2 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -777,31 +777,31 @@
priority 41
track fiberSeqCompendium_PM00006_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00006/fire-peaks.ucsc.bb
shortLabel Panc1 Peaks
longLabel Panc1 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver Panc1 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 42
track fiberSeqCompendium_PM00006_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel Panc1 Hap1/2
longLabel Panc1 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -942,31 +942,31 @@
priority 51
track fiberSeqCompendium_PM00007_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00007/fire-peaks.ucsc.bb
shortLabel THP-1 Peaks
longLabel THP-1 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver THP-1 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 52
track fiberSeqCompendium_PM00007_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel THP-1 Hap1/2
longLabel THP-1 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1107,31 +1107,31 @@
priority 61
track fiberSeqCompendium_PM00008_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00008/fire-peaks.ucsc.bb
shortLabel Hap1 Peaks
longLabel Hap1 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver Hap1 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 62
track fiberSeqCompendium_PM00008_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel Hap1 Hap1/2
longLabel Hap1 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1272,31 +1272,31 @@
priority 71
track fiberSeqCompendium_PM00009_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00009/fire-peaks.ucsc.bb
shortLabel Jurkat Peaks
longLabel Jurkat Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver Jurkat FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 72
track fiberSeqCompendium_PM00009_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel Jurkat Hap1/2
longLabel Jurkat Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1437,31 +1437,31 @@
priority 81
track fiberSeqCompendium_PM00010_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00010/fire-peaks.ucsc.bb
shortLabel H1 Peaks
longLabel H1 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver H1 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 82
track fiberSeqCompendium_PM00010_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel H1 Hap1/2
longLabel H1 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1602,31 +1602,31 @@
priority 91
track fiberSeqCompendium_PM00011_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00011/fire-peaks.ucsc.bb
shortLabel H9 Peaks
longLabel H9 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver H9 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 92
track fiberSeqCompendium_PM00011_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel H9 Hap1/2
longLabel H9 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1767,31 +1767,31 @@
priority 101
track fiberSeqCompendium_PM00012_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PM00012/fire-peaks.ucsc.bb
shortLabel Hek293T Peaks
longLabel Hek293T Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver Hek293T FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 102
track fiberSeqCompendium_PM00012_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel Hek293T Hap1/2
longLabel Hek293T Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -1932,31 +1932,31 @@
priority 111
track fiberSeqCompendium_PS00971_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00971/fire-peaks.ucsc.bb
shortLabel HG01123 Peaks
longLabel HG01123 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG01123 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 112
track fiberSeqCompendium_PS00971_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG01123 Hap1/2
longLabel HG01123 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2097,31 +2097,31 @@
priority 121
track fiberSeqCompendium_PS00972_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00972/fire-peaks.ucsc.bb
shortLabel HG01258 Peaks
longLabel HG01258 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG01258 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 122
track fiberSeqCompendium_PS00972_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG01258 Hap1/2
longLabel HG01258 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2262,31 +2262,31 @@
priority 131
track fiberSeqCompendium_PS00973_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00973/fire-peaks.ucsc.bb
shortLabel HG01358 Peaks
longLabel HG01358 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG01358 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 132
track fiberSeqCompendium_PS00973_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG01358 Hap1/2
longLabel HG01358 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2427,31 +2427,31 @@
priority 141
track fiberSeqCompendium_PS00974_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00974/fire-peaks.ucsc.bb
shortLabel HG01361 Peaks
longLabel HG01361 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG01361 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 142
track fiberSeqCompendium_PS00974_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG01361 Hap1/2
longLabel HG01361 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2592,31 +2592,31 @@
priority 151
track fiberSeqCompendium_PS00975_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00975/fire-peaks.ucsc.bb
shortLabel HG01891 Peaks
longLabel HG01891 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG01891 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 152
track fiberSeqCompendium_PS00975_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG01891 Hap1/2
longLabel HG01891 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2757,31 +2757,31 @@
priority 161
track fiberSeqCompendium_PS00976_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00976/fire-peaks.ucsc.bb
shortLabel HG02071 Peaks
longLabel HG02071 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02071 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 162
track fiberSeqCompendium_PS00976_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02071 Hap1/2
longLabel HG02071 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -2922,31 +2922,31 @@
priority 171
track fiberSeqCompendium_PS00977_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00977/fire-peaks.ucsc.bb
shortLabel HG02074 Peaks
longLabel HG02074 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02074 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 172
track fiberSeqCompendium_PS00977_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02074 Hap1/2
longLabel HG02074 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3087,31 +3087,31 @@
priority 181
track fiberSeqCompendium_PS00978_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00978/fire-peaks.ucsc.bb
shortLabel HG02132 Peaks
longLabel HG02132 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02132 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 182
track fiberSeqCompendium_PS00978_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02132 Hap1/2
longLabel HG02132 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3252,31 +3252,31 @@
priority 191
track fiberSeqCompendium_PS00979_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00979/fire-peaks.ucsc.bb
shortLabel HG02135 Peaks
longLabel HG02135 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02135 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 192
track fiberSeqCompendium_PS00979_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02135 Hap1/2
longLabel HG02135 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3417,31 +3417,31 @@
priority 201
track fiberSeqCompendium_PS00980_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00980/fire-peaks.ucsc.bb
shortLabel HG02257 Peaks
longLabel HG02257 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02257 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 202
track fiberSeqCompendium_PS00980_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02257 Hap1/2
longLabel HG02257 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3582,31 +3582,31 @@
priority 211
track fiberSeqCompendium_PS00981_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00981/fire-peaks.ucsc.bb
shortLabel HG02486 Peaks
longLabel HG02486 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02486 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 212
track fiberSeqCompendium_PS00981_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02486 Hap1/2
longLabel HG02486 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3747,31 +3747,31 @@
priority 221
track fiberSeqCompendium_PS00982_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00982/fire-peaks.ucsc.bb
shortLabel HG02559 Peaks
longLabel HG02559 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02559 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 222
track fiberSeqCompendium_PS00982_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02559 Hap1/2
longLabel HG02559 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -3912,31 +3912,31 @@
priority 231
track fiberSeqCompendium_PS00983_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00983/fire-peaks.ucsc.bb
shortLabel HG02572 Peaks
longLabel HG02572 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02572 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 232
track fiberSeqCompendium_PS00983_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02572 Hap1/2
longLabel HG02572 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4077,31 +4077,31 @@
priority 241
track fiberSeqCompendium_PS00984_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00984/fire-peaks.ucsc.bb
shortLabel HG02717 Peaks
longLabel HG02717 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02717 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 242
track fiberSeqCompendium_PS00984_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02717 Hap1/2
longLabel HG02717 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4242,31 +4242,31 @@
priority 251
track fiberSeqCompendium_PS00985_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00985/fire-peaks.ucsc.bb
shortLabel HG02886 Peaks
longLabel HG02886 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG02886 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 252
track fiberSeqCompendium_PS00985_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG02886 Hap1/2
longLabel HG02886 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4407,31 +4407,31 @@
priority 261
track fiberSeqCompendium_PS00986_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00986/fire-peaks.ucsc.bb
shortLabel HG03516 Peaks
longLabel HG03516 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG03516 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 262
track fiberSeqCompendium_PS00986_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG03516 Hap1/2
longLabel HG03516 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4572,31 +4572,31 @@
priority 271
track fiberSeqCompendium_PS00987_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00987/fire-peaks.ucsc.bb
shortLabel HG03804 Peaks
longLabel HG03804 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG03804 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 272
track fiberSeqCompendium_PS00987_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG03804 Hap1/2
longLabel HG03804 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4737,31 +4737,31 @@
priority 281
track fiberSeqCompendium_PS00988_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00988/fire-peaks.ucsc.bb
shortLabel HG03942 Peaks
longLabel HG03942 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG03942 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 282
track fiberSeqCompendium_PS00988_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG03942 Hap1/2
longLabel HG03942 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -4902,31 +4902,31 @@
priority 291
track fiberSeqCompendium_PS00989_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00989/fire-peaks.ucsc.bb
shortLabel HG04160 Peaks
longLabel HG04160 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG04160 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 292
track fiberSeqCompendium_PS00989_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG04160 Hap1/2
longLabel HG04160 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5067,31 +5067,31 @@
priority 301
track fiberSeqCompendium_PS00990_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS00990/fire-peaks.ucsc.bb
shortLabel HG04187 Peaks
longLabel HG04187 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HG04187 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 302
track fiberSeqCompendium_PS00990_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HG04187 Hap1/2
longLabel HG04187 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5232,31 +5232,31 @@
priority 311
track fiberSeqCompendium_PS01302_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01302/fire-peaks.ucsc.bb
shortLabel A549 Peaks
longLabel A549 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver A549 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 312
track fiberSeqCompendium_PS01302_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel A549 Hap1/2
longLabel A549 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5397,31 +5397,31 @@
priority 321
track fiberSeqCompendium_PS01305_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01305/fire-peaks.ucsc.bb
shortLabel MCF-7 Peaks
longLabel MCF-7 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver MCF-7 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 322
track fiberSeqCompendium_PS01305_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel MCF-7 Hap1/2
longLabel MCF-7 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5562,31 +5562,31 @@
priority 331
track fiberSeqCompendium_PS01314_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01314/fire-peaks.ucsc.bb
shortLabel HCT116 Peaks
longLabel HCT116 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver HCT116 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 332
track fiberSeqCompendium_PS01314_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel HCT116 Hap1/2
longLabel HCT116 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5727,31 +5727,31 @@
priority 341
track fiberSeqCompendium_PS01319_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01319/fire-peaks.ucsc.bb
shortLabel Caco-2 Peaks
longLabel Caco-2 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver Caco-2 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 342
track fiberSeqCompendium_PS01319_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel Caco-2 Hap1/2
longLabel Caco-2 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -5892,31 +5892,31 @@
priority 351
track fiberSeqCompendium_PS01388_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01388/fire-peaks.ucsc.bb
shortLabel WTC-11 Peaks
longLabel WTC-11 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver WTC-11 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 352
track fiberSeqCompendium_PS01388_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel WTC-11 Hap1/2
longLabel WTC-11 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -6057,31 +6057,31 @@
priority 361
track fiberSeqCompendium_PS01517_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01517/fire-peaks.ucsc.bb
shortLabel GM28572 Peaks
longLabel GM28572 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM28572 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 362
track fiberSeqCompendium_PS01517_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM28572 Hap1/2
longLabel GM28572 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -6222,31 +6222,31 @@
priority 371
track fiberSeqCompendium_PS01518_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01518/fire-peaks.ucsc.bb
shortLabel GM28570 Peaks
longLabel GM28570 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM28570 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 372
track fiberSeqCompendium_PS01518_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM28570 Hap1/2
longLabel GM28570 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -6387,31 +6387,31 @@
priority 381
track fiberSeqCompendium_PS01519_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01519/fire-peaks.ucsc.bb
shortLabel GM25456 Peaks
longLabel GM25456 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM25456 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 382
track fiberSeqCompendium_PS01519_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM25456 Hap1/2
longLabel GM25456 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -6552,31 +6552,31 @@
priority 391
track fiberSeqCompendium_PS01520_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01520/fire-peaks.ucsc.bb
shortLabel GM25455 Peaks
longLabel GM25455 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM25455 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 392
track fiberSeqCompendium_PS01520_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM25455 Hap1/2
longLabel GM25455 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)
@@ -6717,31 +6717,31 @@
priority 401
track fiberSeqCompendium_PS01524_peaks
parent fiberSeqCompendium off
type bigNarrowPeak
bigDataUrl /gbdb/hg38/fiberSeq/PS01524/fire-peaks.ucsc.bb
shortLabel GM27730 Peaks
longLabel GM27730 Fiber-seq FIRE peaks
signalFilter 0
signalFilterLimits 0:100
qValueFilter 0
qValueFilterLimits 0:100
scoreFilter 0
scoreFilterLimits 0:1000
mouseOver GM27730 FIRE peak
FIRE score: ${signalValue}
-log10 FDR: ${qValue}
Score: ${score}
- onlyVisibility dense
+ visibility dense
priority 402
track fiberSeqCompendium_PS01524_hap
parent fiberSeqCompendium off
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig 0 100
viewLimits 0:100
autoScale off
alwaysZero on
windowingFunction maximum
maxHeightPixels 100:40:8
shortLabel GM27730 Hap1/2
longLabel GM27730 Fiber-seq percent accessible, haplotype 1 (blue) and 2 (orange)