a86b49667ad82b0f6c3745379f186f4d5753e368 lrnassar Wed Apr 22 13:52:14 2026 -0700 Simplify NMD Escape subtrack longLabels. refs #33737 The '50bp/100bp/intronless/400nt' rule-list became inaccurate after the Rule 2 refinement (Rule 2 now covers single coding exon + no 3'UTR intron, not just intronless). Drop the enumerated rules from the longLabel and defer to the track description page for rule detail. diff --git src/hg/makeDb/trackDb/human/hg38/nmd.ra src/hg/makeDb/trackDb/human/hg38/nmd.ra index 19fd1d30d2f..fb8bc855e66 100644 --- src/hg/makeDb/trackDb/human/hg38/nmd.ra +++ src/hg/makeDb/trackDb/human/hg38/nmd.ra @@ -1,40 +1,40 @@ track nmd shortLabel NMD Escape longLabel NMD Escape: Predicted regions where premature termination codons escape NMD group genes type bed 4 visibility hide superTrack on pennantIcon New red ../goldenPath/newsarch.html#042226 "Released Apr. 22, 2026" track nmdEscGencode shortLabel NMD Escape Gencode - longLabel NMD escape 50bp/100bp/intronless/400nt ruleset: Gencode transcripts + longLabel NMD escape predictions: Gencode transcripts parent nmd off bigDataUrl /gbdb/hg38/nmd/nmdEscRegions.bb visibility hide type bigBed 9 + mouseOverField mouseover html nmdEscTranscripts # this could use a text file one day with the version dataVersion Gencode V49 priority 1.5 track nmdEscNcbiRefSeq shortLabel NMD Escape RefSeq - longLabel NMD escape 50bp/100bp/intronless/400nt ruleset: NCBI RefSeq Curated transcripts + longLabel NMD escape predictions: NCBI RefSeq Curated transcripts parent nmd on bigDataUrl /gbdb/hg38/nmd/nmdEscNcbiRefSeq.bb visibility pack type bigBed 9 + mouseOverField mouseover html nmdEscTranscripts # this could use a text file one day with the version dataVersion GCF_000001405.40-RS_2025_08 priority 1.6 track nmdDetectiveA shortLabel NMDetective-A longLabel NMDetective-A: Random forest prediction of NMD efficiency (Lindeboom 2016) parent nmd off bigDataUrl /gbdb/hg38/nmd/NMDetectiveA.bw