c81011d4a8f57db347e15aa1248c501b2c8a6fea lrnassar Mon Jun 1 13:16:15 2026 -0700 QA fixes for the lrSv long-read SV supertrack: labels and description cleanups. refs #36258 Trim six subtrack longLabels to the 85-char limit (ga4kSv, hprc2Sv, hgsvc2Sv, chirmade101Sv, cpc1Sv, and lrSvAll; the lrSvAll change is also made in the lrSvMergeAll.py generator so a re-run reproduces it). Standardize the APR dataset name to "Arab Pangenome Reference (APR)" across lrSv.ra, lrSv.html, aprSv.html, and the makeDoc comment (was a mix of "Arabic" and "UAE UPR"). lrSv1kgOnt.html: state per-assembly SV counts (hg38 lifted 148,375 vs hs1 native 161,332, each with its own type breakdown) and encode non-ASCII author names as numeric entities. hgsvc3Sv.html: correct the hg38 counts to match the served bigBed (176,231 DEL+INS, 176,531 total). colorsDbSv.html: use $db in the hgdownload path so it resolves on hs1 as well as hg38. cpc1Sv.html: encode a Unicode minus sign as a numeric entity. diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html index 4a6736c66a4..c9c68e0f0a9 100644 --- src/hg/makeDb/trackDb/human/lrSv.html +++ src/hg/makeDb/trackDb/human/lrSv.html @@ -160,33 +160,33 @@ 168 57,207,414 HGSVC3 65 HGSVC3 diverse reference assemblies No ~47x HiFi + ~56x ONT 176,531 50 154 30,176,500 - Arab UPR + Arab APR 53 - UAE-resident Arabs from 8 countries (UAE Pangenome Reference) + UAE-resident Arabs from 8 countries (Arab Pangenome Reference) No ~35x HiFi + ~54x ONT (+ Hi-C, pangenome graph) 72,656 1 21 99,885 CPC 58 Chinese Pangenome Consortium, 36 minority ethnic groups (HPRC-specific SVs removed) No ~30x HiFi (pangenome graph) 36,030 1