c81011d4a8f57db347e15aa1248c501b2c8a6fea
lrnassar
  Mon Jun 1 13:16:15 2026 -0700
QA fixes for the lrSv long-read SV supertrack: labels and description cleanups. refs #36258

Trim six subtrack longLabels to the 85-char limit (ga4kSv, hprc2Sv, hgsvc2Sv,
chirmade101Sv, cpc1Sv, and lrSvAll; the lrSvAll change is also made in the
lrSvMergeAll.py generator so a re-run reproduces it).
Standardize the APR dataset name to "Arab Pangenome Reference (APR)" across
lrSv.ra, lrSv.html, aprSv.html, and the makeDoc comment (was a mix of "Arabic"
and "UAE UPR").
lrSv1kgOnt.html: state per-assembly SV counts (hg38 lifted 148,375 vs hs1
native 161,332, each with its own type breakdown) and encode non-ASCII author
names as numeric entities.
hgsvc3Sv.html: correct the hg38 counts to match the served bigBed (176,231
DEL+INS, 176,531 total).
colorsDbSv.html: use $db in the hgdownload path so it resolves on hs1 as well
as hg38.
cpc1Sv.html: encode a Unicode minus sign as a numeric entity.

diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra
index aa7d9f79a29..60193aa68f8 100644
--- src/hg/makeDb/trackDb/human/lrSvAll.ra
+++ src/hg/makeDb/trackDb/human/lrSvAll.ra
@@ -1,23 +1,23 @@
 # AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
 # Do not edit by hand - re-run the merge script and re-commit.
 
     track lrSvAll
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb
     shortLabel All LR SVs merged
-    longLabel All long-read SVs merged across the lrSv subtracks (exact-position match), with per-database AC
+    longLabel All long-read SVs merged across subtracks by exact position, with per-database AC
     type bigBed 9 +
     itemRgb on
     visibility pack
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen sources=$sources AF=$minAF-$maxAF AC=$AC
     searchIndex name
     filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2|HPRC v2 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,KimPD|Kim PD Brain 100,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101
     filterType.sources multipleListOr
     filterLabel.sources Source Database
     filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,CNV,BND,TRA,MEI
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30000000
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:600000