68c5b3b5dfc4053ff78a6b1d236bd1ac90251cfa
lrnassar
  Mon Jun 1 14:40:45 2026 -0700
varFreqs: description pages for the three combined tracks and "SNV" rename
sweep.

Add varFreqsDisease.html and varFreqsArray.html so the two new combined
tracks have full Description/Display/Methods/Data Access/References. Add a
Caveats section on varFreqsArray about chip-data quality vs sequencing.

Update varFreqsAll.html and the supertrack varFreqs.html to reflect the
three-combined-track family (cross-links between siblings, new "Combined
Tracks" section, new table rows, and updated source/variant counts). Add a
GoNL row to the supertrack table.

Sweep 37 subtrack longLabels and four cross-referencing description pages
(colorsDbSnv.html, mei.html, meiSwegen.html, phasedVars.html) from
"Variant Frequencies:" to "SNV Frequencies:" to match the supertrack
shortLabel. refs #36642

diff --git src/hg/makeDb/trackDb/human/meiSwegen.html src/hg/makeDb/trackDb/human/meiSwegen.html
index e628b81ed32..306855a3594 100644
--- src/hg/makeDb/trackDb/human/meiSwegen.html
+++ src/hg/makeDb/trackDb/human/meiSwegen.html
@@ -1,26 +1,26 @@
 <h2>Description</h2>
 <p>
 This track shows <b>mobile element insertions (MEIs)</b> identified by
 <a href="https://melt.igs.umaryland.edu/" target="_blank">MELT</a>
 on the <a href="https://swefreq.nbis.se/dataset/SweGen" target="_blank">SweGen</a>
 cohort of 1,000 Swedish whole-genome samples (Ameur et al. 2017). Each
 site is an insertion of an Alu, L1 (LINE-1), SVA or HERV-K mobile
 element relative to the reference. The SweGen short-variant frequency
 data for the same cohort is shown in the
 <a href="hgTrackUi?g=swegen">SweGen variant frequencies</a> subtrack of
-the Variant Frequencies collection.
+the SNV Frequencies collection.
 </p>
 
 <table class="stdTbl">
 <tr><th>Class</th><th>MEIs</th></tr>
 <tr><td>Alu</td><td>14,467</td></tr>
 <tr><td>L1</td><td>2,429</td></tr>
 <tr><td>SVA</td><td>1,131</td></tr>
 <tr><td>HERVK</td><td>73</td></tr>
 <tr><th>Total (GRCh37)</th><th>18,100</th></tr>
 <tr><th>Total (after liftOver to hg38)</th><th>18,090</th></tr>
 </table>
 
 <p>
 For each MEI, the track reports the mobile element class, the
 insertion length, the MELT subfamily call (e.g. AluYa5, L1Ta), the