798b37017a4e1b95f3ccdf7c8b477dfb5446a324
lrnassar
  Fri Jul 24 15:22:34 2026 -0700
lrSv: QA fixes for cardSv/noyvertSv additions - BND filter, makedoc, link targets. refs #37888

Add BND to filterValues.svType on the longReadVariants supertrack and the merged
lrSvAll track (and the lrSvMergeAll.py generator) so the breakend variants that
noyvertSv contributes are filterable. Correct a stale makedoc comment that said
CARD was not in the lrSvAll merge (it is). Add target="_blank" to the API and
hgdownload links in cardSv.html and noyvertSv.html.

diff --git src/hg/makeDb/trackDb/human/noyvertSv.html src/hg/makeDb/trackDb/human/noyvertSv.html
index d37b877d001..f8cadc9e99c 100644
--- src/hg/makeDb/trackDb/human/noyvertSv.html
+++ src/hg/makeDb/trackDb/human/noyvertSv.html
@@ -95,39 +95,39 @@
 step-by-step commands are recorded in the UCSC makeDoc for this track
 container:
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank">
 doc/hg38/lrSv.txt</a>. The conversion script and autoSql schema live in
 <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank">
 makeDb/scripts/lrSv</a>, and the track configuration is in
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>.
 </p>
 
 <h2>Data Access</h2>
 <p>
 The data can be explored interactively in table format with the
 <a href="../cgi-bin/hgTables">Table Browser</a> or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a> and exported from there
 to spreadsheet or tab-sep tables. From scripts, the data can be accessed
-through our <a href="https://api.genome.ucsc.edu">API</a>, track=<i>noyvertSv</i>.
+through our <a href="https://api.genome.ucsc.edu" target="_blank">API</a>, track=<i>noyvertSv</i>.
 </p>
 <p>
 The annotation is stored as a bigBed file that can be downloaded from
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/" target="_blank">our
 download server</a> as <tt>noyvert.bb</tt>. Individual regions or the whole
 annotation can be obtained with the <tt>bigBedToBed</tt> utility, available
 from our
-<a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">utilities
+<a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads" target="_blank">utilities
 page</a>. Example:
 <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/noyvert.bb -chrom=chr21 -start=0 -end=100000000 stdout</tt>.
 </p>
 
 <h2>Credits</h2>
 <p>
 Thanks to Boris Noyvert and colleagues at Boehringer Ingelheim and the wider
 study team for generating this multi-ancestry long-read SV panel and for
 sharing the per-variant summary table, and to the 1000 Genomes Project and the
 UK Biobank participants whose data made the study possible.
 </p>
 
 <h2>References</h2>
 <p>
 Noyvert B, Erzurumluoglu AM, Drichel D, Omland S, Andlauer TFM <em>et al</em>.