68c5b3b5dfc4053ff78a6b1d236bd1ac90251cfa
lrnassar
  Mon Jun 1 14:40:45 2026 -0700
varFreqs: description pages for the three combined tracks and "SNV" rename
sweep.

Add varFreqsDisease.html and varFreqsArray.html so the two new combined
tracks have full Description/Display/Methods/Data Access/References. Add a
Caveats section on varFreqsArray about chip-data quality vs sequencing.

Update varFreqsAll.html and the supertrack varFreqs.html to reflect the
three-combined-track family (cross-links between siblings, new "Combined
Tracks" section, new table rows, and updated source/variant counts). Add a
GoNL row to the supertrack table.

Sweep 37 subtrack longLabels and four cross-referencing description pages
(colorsDbSnv.html, mei.html, meiSwegen.html, phasedVars.html) from
"Variant Frequencies:" to "SNV Frequencies:" to match the supertrack
shortLabel. refs #36642

diff --git src/hg/makeDb/trackDb/human/phasedVars.html src/hg/makeDb/trackDb/human/phasedVars.html
index 94794093818..74fa8148711 100644
--- src/hg/makeDb/trackDb/human/phasedVars.html
+++ src/hg/makeDb/trackDb/human/phasedVars.html
@@ -1,22 +1,22 @@
 <h2>Description</h2>
 <p>
 This tracks contains variants of individual genotypes, usually phased, from the projects
 Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,
 and the Mexico Biobank.
 The original release of 1000 Genomes has its own, separate track.
-Projects where the released variants are not phased can be found in the container track "Variant Frequencies".
+Projects where the released variants are not phased can be found in the container track "SNV Frequencies".
 </p>
 
 <p>
 <b>Available on hg19 and hg38:</b></p>
 <ul>
     <li>
         <b><a href="https://www.mxbiobank.org/" target="_blank">Mexico Biobank (MXB)</a></b>:
         This track displays phased alleles from the Mexico Biobank Project (MXB), based on array
         genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000
         National Health Survey (ENSA 2000) conducted by the National Institute of Public Health
         (INSP). Frequencies can be plotted onto a map on
         <a href="https://morenolab.shinyapps.io/mexvar/" target="_blank">MexVar</a>.
         The hg38 track was lifted from hg19.
     </li>