e1b75109b63da525f8d7bf0da81a3c13a81ffc0a lrnassar Wed Apr 1 09:21:29 2026 -0700 Squashing old pennantIcons, no RM. diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index f21bd27dee4..8ab19b51f51 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -146,31 +146,30 @@ group phenDis visibility hide color 0,100,0 type bigBed 9 + release alpha mouseOverField trait bigDataUrl /gbdb/$D/bbi/phegeni.bb urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$ track varsInPubs shortLabel Variants in Papers longLabel Genetic Variants mentioned in scientific publications superTrack on group phenDis type bed 3 -pennantIcon Updated red ../goldenPath/newsarch.html#111425 "Updated Varaico Variants to release 2 and new Varaico Variants (suppl) track Nov. 14, 2025" track mastermind shortLabel Mastermind Variants longLabel Genomenon Mastermind Variants extracted from full text publications visibility dense type bigBed 9 + urls url=$$ bigDataUrl /gbdb/$D/bbi/mastermind.bb noScoreFilter on exonNumbers off mouseOver <b>Variant</b>: $name<br> <b>Gene</b>: $gene<br> <b>Linkout</b>: <a href="$url" target="_blank">$_mouseOver</a><br> <b>Article count 1</b>: $mmcnt1<br> <b>Article count 2</b>: $mmcnt2<br> <b>Article count 3</b>: $mmcnt3 itemRgb on filter.mmcnt1 0 filter.mmcnt2 0 filter.mmcnt3 0 @@ -230,47 +229,45 @@ html varsInPubs track varaico shortLabel Varaico Variants longLabel Varaico Variants extracted from full text publications, titles, and abstracts visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaico.bb noScoreFilter on exonNumbers off # itemRgb on dataVersion release 2 (20251110) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect - pennantIcon Updated red ../goldenPath/newsarch.html#111425 "Nov. 14, 2025" html varaico.html track varaicoSuppl shortLabel Varaico Variants (suppl) longLabel Varaico Variants extracted from Supplementary Data visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb noScoreFilter on exonNumbers off # itemRgb on dataVersion release 2 (20251110) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect - pennantIcon New red ../goldenPath/newsarch.html#111425 "Released Nov. 14, 2025" html varaico.html track caseControl compositeTrack on shortLabel Case Control longLabel Case Control Consortium group phenDis visibility hide type chromGraph minMax 0,15 linesAt 5,10 track cccTrendPvalBd parent caseControl shortLabel CCC Bipolar Dis