ee8f8d6e46a060af155da2687f756620f64c8626
lrnassar
  Fri Jun 5 15:03:47 2026 -0700
varFreqs: swap priorities so Population + Unaffected (varFreqsBackground)
appears first in the listing, Affected/Case Individuals second.
varFreqsBackground 0.11 -> 0.1; varFreqsAffected 0.1 -> 0.11. refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 1585bd1c296..9e8b2ab5abe 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -3,31 +3,31 @@
 longLabel SNV Frequencies from various cohorts or national projects
 group varRep
 type bed 12
 visibility hide
 superTrack on
 
         track varFreqsAffected
         shortLabel Affected/Case Individuals
         longLabel SNV Frequencies: variants in ~130,000 affected or case individuals (autism, schizophrenia, rare disease cohorts)
         type bigBed 9 +
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_affected/varFreqsAffected.bb
         visibility pack
         itemRgb on
         maxWindowToDraw 5000000
-        priority 0.1
+        priority 0.11
         mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Affected AF:</b> ${affectedAF}<br><b>Affected AC:</b> ${affectedAC}<br><b>Affected cohorts:</b> ${affectedCohorts}<br><b>Background AF:</b> ${backgroundAF}
         filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
         filterType.affectedCohorts multipleListOr
         filterLabel.affectedCohorts Affected/case cohort
         filterValues.backgroundSources AllOfUs|AllOfUs,SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,NPM|NPM Singapore,KOVA|KOVA Korea,ToMMo|ToMMo Japan,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA,CoLoRSdb|CoLoRSdb PacBio LR,SVatalog|SVatalog 101 10XG SR,Tishkoff180|Tishkoff 180 African WGS,WBBC|WBBC China,ChinaMAP|China ChinaMAP,GenomeIndia|GenomeIndia 9.7k WGS,GoNL|GoNL Netherlands ~13x SR
         filterType.backgroundSources multipleListOr
         filterLabel.backgroundSources Background source (population or unaffected)
         # Variant type and consequence filters
         filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV
         filterLabel.varType Variant Type
         filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,3_prime_utr|3' UTR,5_prime_utr|5' UTR,non_coding|Non-coding,.|Intergenic,others|Other
         filterType.consequence multipleListOr
         filterLabel.consequence Consequence
         # Length filters
         filterByRange.refLen on
@@ -338,31 +338,31 @@
         filterByRange.WBBCAC_South on
         filterLabel.WBBCAC_South WBBC China South Han AC
         filterByRange.WBBCAC_Lingnan on
         filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC
         skipEmptyFields on
 
         track varFreqsBackground
         shortLabel Population + Unaffected
         longLabel SNV Frequencies: variants in ~1.5 million individuals from population cohorts and unaffected or control arms
         type bigBed 9 +
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_background/varFreqsBackground.bb
         visibility pack
         itemRgb on
         maxWindowToDraw 5000000
-        priority 0.11
+        priority 0.1
         mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Background AF:</b> ${backgroundAF}<br><b>Background AC:</b> ${backgroundAC}<br><b>Sources:</b> ${backgroundSources}<br><b>Affected AF:</b> ${affectedAF}
         filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
         filterType.affectedCohorts multipleListOr
         filterLabel.affectedCohorts Affected/case cohort
         filterValues.backgroundSources AllOfUs|AllOfUs,SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,NPM|NPM Singapore,KOVA|KOVA Korea,ToMMo|ToMMo Japan,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA,CoLoRSdb|CoLoRSdb PacBio LR,SVatalog|SVatalog 101 10XG SR,Tishkoff180|Tishkoff 180 African WGS,WBBC|WBBC China,ChinaMAP|China ChinaMAP,GenomeIndia|GenomeIndia 9.7k WGS,GoNL|GoNL Netherlands ~13x SR
         filterType.backgroundSources multipleListOr
         filterLabel.backgroundSources Background source (population or unaffected)
         # Variant type and consequence filters
         filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV
         filterLabel.varType Variant Type
         filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,3_prime_utr|3' UTR,5_prime_utr|5' UTR,non_coding|Non-coding,.|Intergenic,others|Other
         filterType.consequence multipleListOr
         filterLabel.consequence Consequence
         # Length filters
         filterByRange.refLen on