785f82c6a4c5443431c8029fee829999c6982864
lrnassar
  Mon Mar 9 14:51:18 2026 -0700
Making the new cCREs track squish as feedback from Zhiping. It looks better since the track just has single coverage and the mouseOvers work in squish mode. Refs #37131

diff --git src/hg/makeDb/trackDb/mouse/mm10/encode.cCREs.override.ra src/hg/makeDb/trackDb/mouse/mm10/encode.cCREs.override.ra
index d558cc5c2c6..51e845e5e8f 100644
--- src/hg/makeDb/trackDb/mouse/mm10/encode.cCREs.override.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/encode.cCREs.override.ra
@@ -9,26 +9,26 @@
 
 track encodeCcreCombined override
 parent cCREs
 longLabel ENCODE3 Registry of candidate Cis-Regulatory Elements (cCREs)
 priority 3
 visibility hide
 shortLabel ENCODE3 cCREs
 url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
 pennantIcon snowflake.png ../goldenPath/newsarch.html#011526 "This data represents ENCODE3 cCREs. For the latest data, see the ENCODE4 cCREs track."
 
 track cCREregistry
 shortLabel ENCODE4 cCREs
 longLabel ENCODE4 Registry of candidate Cis-Regulatory Elements (cCREs)
 type bigBed 9 + 5
 bigDataUrl /gbdb/$D/encode4/ccre/encodeCcreRegistry.bb
-visibility dense
+visibility squish
 priority 1
 filterValues.cCRE_class CA|Chromatin accessibility (CA),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhancer|Proximal enhancer,Promoter|Promoter,TF|Transcription factor (TF)
 parent cCREs
 filterType.cCRE_class multipleListOr
 mouseOver <b>ID:</b> <a target="_blank" href="https://screen.wenglab.org/search?assembly=mm10&accessions=${name}">${name}</a><br><b>Class:</b> ${cCRE_class}<br><b>DNase Max-Z:</b> ${DNase_maxZ}<br><b>H3K4me3 Max-Z:</b> ${H3K4me3_maxZ}<br><b>H3K27ac Max-Z:</b> ${H3K27ac_maxZ}<br><b>CTCF Max-Z:</b> ${CTCF_maxZ}
 url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
 urlLabel cCRE details on SCREEN:
 dataVersion ENCODE Registry version 4, 2024. (ENCODE4 data includes ENCODE2, ENCODE3, and the mouse ENCODE project)
 
 include encode4.ccres.ra