198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/utils/gtfToGenePred/gtfToGenePred.c src/hg/utils/gtfToGenePred/gtfToGenePred.c index 92a153ef187..d6659382ffb 100644 --- src/hg/utils/gtfToGenePred/gtfToGenePred.c +++ src/hg/utils/gtfToGenePred/gtfToGenePred.c @@ -9,31 +9,31 @@ #include "errCatch.h" #include "options.h" void usage() /* Explain usage and exit. */ { errAbort( "gtfToGenePred - convert a GTF file to a genePred\n" "usage:\n" " gtfToGenePred gtf genePred\n" "\n" "options:\n" " -genePredExt - create a extended genePred, including frame\n" " information and gene name\n" " -allErrors - skip groups with errors rather than aborting.\n" - " Useful for getting infomation about as many errors as possible.\n" + " Useful for getting information about as many errors as possible.\n" " -ignoreGroupsWithoutExons - skip groups contain no exons rather than\n" " generate an error.\n" " -infoOut=file - write a file with information on each transcript\n" " -sourcePrefix=pre - only process entries where the source name has the\n" " specified prefix. May be repeated.\n" " -impliedStopAfterCds - implied stop codon in after CDS\n" " -simple - just check column validity, not hierarchy, resulting genePred may be damaged\n" " -geneNameAsName2 - if specified, use gene_name for the name2 field\n" " instead of gene_id.\n" " -includeVersion - it gene_version and/or transcript_version attributes exist, include the version\n" " in the corresponding identifiers.\n"); } static struct optionSpec options[] = { {"simple", OPTION_BOOLEAN},