c32c258125a52b45b4f4f7c80d5f7657dd81ce46 lrnassar Wed Jun 3 08:43:22 2026 -0700 Removing charlie as the only recipient to the civic otto, and moving up the otto to be with the other standard ones, no RM. diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 544dcc6103b..ba21817348b 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -97,30 +97,33 @@ #wuhCor1 uniprot otto cron by Max, May 2021 00 4 * * * /hive/data/outside/otto/uniprot/covidCheck.sh #ClinGen 00 9 * * * /hive/data/outside/otto/clinGen/clinGenWrapper.sh #ClinGen CSpec 11 11 * * 3 /hive/data/outside/otto/clinGen/clinGenCspec/makeClinGenCspec.sh #VarChat 22 22 * * 4 /hive/data/outside/otto/varChat/varChatOtto.sh #vista 0 9 1 * * /hive/data/outside/otto/vista/vistaOtto.sh +# CIViC update. Releases are typically on the 1st of the month +12 12 2 * * /hive/data/outside/otto/civic/doCivicUpdate.sh + #GRC Incident MAILTO=hiram@soe.ucsc.edu,otto-group@ucsc.edu 33 06 * * * /hive/data/outside/otto/grcIncidentDb/runUpdate.sh makeItSo # liftOver request watch - sends email to configured address in hg.conf # e.g.: chainFileRequestEmail=... - running every 7 minutes 1,8,15,22,29,36,43,50,57 * * * * /hive/data/outside/otto/liftRequest/devAndRR.sh # GenArk update hgcentral.genark table, once a week on Tuesday # the script itself sends email for notices about activity 37 10 * * 2 /hive/data/inside/GenArk/updateHgcentral.sh makeItSo ##### this script is making a listing that is used by the pushRR.sh script. ##### this takes a significant amount of time to run, 2 or 3 hours. ##### Needs to be done before the pushRR.sh script below is running at 01:03 @@ -154,19 +157,15 @@ # Update Cell Browser .json facets files using tabulate_facets.pl 0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && ~bwick/cellBrowser/ucsc/tabulate_facets.pl /usr/local/apache/htdocs-cells-beta/dataset.json 0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && /usr/local/apache/htdocs-cells-submit/facets/tsv_to_json.py # Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule #Format: Minute - Hour - DayofMonth month Day-of-week MAILTO=mhaeussl@ucsc.edu 04 04 20 * * /hive/data/outside/otto/malacards/update.sh MAILTO=jbirgmei@ucsc.edu # PubTator3 dbSNP track update 28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./doUpdate.sh' - -MAILTO=cvaske@ucsc.edu -# CIViC update. Releases are typically on the 1st of the month -12 12 2 * * /hive/data/outside/otto/civic/doCivicUpdate.sh