198c9b8daecc44fbda6a6494c566c723920f030a
lrnassar
  Wed Mar 11 18:25:21 2026 -0700
Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM.

diff --git src/hg/utils/pslMismatchGapToBed/pslMismatchGapToBed.c src/hg/utils/pslMismatchGapToBed/pslMismatchGapToBed.c
index 017e5211cdb..b2eab00bf69 100644
--- src/hg/utils/pslMismatchGapToBed/pslMismatchGapToBed.c
+++ src/hg/utils/pslMismatchGapToBed/pslMismatchGapToBed.c
@@ -476,31 +476,31 @@
 int winStart = (psl->tStart > fudge) ? psl->tStart - fudge : 0;
 int winEnd = psl->tEnd + fudge;
 gSeqWin->fetch(gSeqWin, psl->tName, winStart, winEnd);
 touppers(txSeq->dna);
 char *chromAcc = db ? hRefSeqAccForChrom(db, psl->tName) : psl->tName;
 int ix;
 for (ix = 0;  ix < psl->blockCount;  ix++)
     {
     compareExonBases(psl, ix, gSeqWin, txSeq, cds, chromAcc, differencesList);
     checkIntrons(psl, ix, gSeqWin, txSeq, cds, chromAcc, differencesList);
     }
 checkUnalignedTxSeq(psl, gSeqWin, txSeq, cds, differencesList);
 }
 
 static void sortAndDumpBedPlus(char *outBaseName, struct txAliDiff *diffList)
-/* Sort the mostly-backwards bed list and and dump to file named outBaseName.bed. */
+/* Sort the mostly-backwards bed list and dump to file named outBaseName.bed. */
 {
 char fileName[PATH_LEN];
 safef(fileName, sizeof(fileName), "%s.bed", outBaseName);
 FILE *f = mustOpen(fileName, "w");
 slReverse(&diffList);
 slSort(&diffList, bedCmp);
 struct txAliDiff *diffItem;
 for (diffItem = diffList; diffItem != NULL;  diffItem = diffItem->next)
     {
     txAliDiffOutput(diffItem, f, '\t', '\n');
     }
 carefulClose(&f);
 }
 
 static struct hash *hashDnaSeqFromFa(char *faFile)