ef826dbcf8ee0961e27c38050deee74c9870ac05
lrnassar
  Tue Jun 2 12:43:26 2026 -0700
Seed htdocs/data/recTrackSets/ for the upcoming file-based RTS loader: one example RTS per assembly (hg19/SNVs%20Clinical, hg38/Non_Coding_SNVs_hg38), plus copies of the recTrackSets.hg19.tab and recTrackSets.hg38.tab manifests at the top of the new directory. Per-session file format is the same one-key=value-per-line scrubbed cart produced by rtsUpdate. Also refreshes utils/rts/hg19/SNVs%20Clinical via rtsUpdate fetch (676 -> 660 vars after scrub) so both locations agree during the transition. refs #32768

diff --git src/hg/htdocs/data/recTrackSets/recTrackSets.hg19.tab src/hg/htdocs/data/recTrackSets/recTrackSets.hg19.tab
new file mode 100644
index 00000000000..d2272d7f8e2
--- /dev/null
+++ src/hg/htdocs/data/recTrackSets/recTrackSets.hg19.tab
@@ -0,0 +1,17 @@
+# List of curated sessions for clinical, etc. users
+#
+# File is tab-separated.  userName and sessionName are fields in hgcentral.namedSessionDb table
+#       sessionName is cgi-decoded to readable text
+# Note that named sessions support description in settings field, however the description in
+#       this file is used in browser (allows non-owner of session, e.g. QA, to edit)
+#       
+# For details on how to update this file, see the wiki: http://genomewiki.ucsc.edu/genecats/index.php/Recommended_Track_Sets
+#       
+# Format: label, userName, sessionName, description
+Clinical SNVs	View	SNVs%20Clinical	Assess potential disease contributions of single nucleotide variants in coding regions
+Clinical CNVs	View	CNVs%20Clinical	Assess potential disease contributions of structural variants in coding regions
+Non-coding SNVs	View	Non%20coding%20SNVs	Investigate functional aspects of non-coding variants
+Determine Exon Relevance	View	Exon_Relevance_hg19	Examine if variants are present in an exon required for the function of the expressed gene product
+Problematic Regions	View	Problematic%20Regions	Evaluate if annotations are on potential low confidence regions due to high homology or other reported concerns
+ENIGMA BRCA1/BRCA2 VCEP	View	BRCA1_BRCA2_ENIGMA_hg19	Assess potential disease contribution of variants on BRCA1 and BRCA2 according to the ENIGMA VCEP guidelines
+InSiGHT Lynch Syndrome VCEP	View	insightVcepHg19	Assess potential disease contribution of variants on MLH1, MSH2, MSH6, and PMS2 according to the InSiGHT VCEP guidelines