53ab3f1e293a91ddf71ec7568f4a6ff827bcd278
lrnassar
  Fri Oct 2 13:52:36 2026 -0700
Native GPN-Star track (Ye, Benegas et al., Nature 2026) on hg38, mm39, galGal6, dm6 and ce11, from the authors' Hugging Face hub. Each model is a multiWig sequence logo plus a four-allele -LLR composite using negateValues. The three hg38 models (V/M/P) sit in predictionScoresSuper via human/gpnStar.ra with /gbdb/$D bigDataUrls so -strict drops them on other human assemblies; the other four get a standalone gpnStar superTrack. The authors' bigWigs come from pyBigWig, whose bwAddIntervalSpanSteps writes the last section of each run 6 bases too long (pyBigWig #166) and makes bigWigAverageOverBed and bigWigCorrelate abort, so gpnStarRebuild.sh re-encodes them with wigToBigWig and gpnStarVerify.sh checks every per-base value is unchanged. Entropy scores and the GenArk-only Arabidopsis set are left out, and pennantIcon still has #TBD placeholders for the newsarch anchor and date. refs #38451

diff --git src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra
index f434d7232b3..ad61ddfb015 100644
--- src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra
+++ src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra
@@ -1,37 +1,39 @@
 # Local declaration so that local gold.html is picked up.
 track gold override
 html gold
 visibility hide
 
 track grcIncidentDb override
 url https://www.ncbi.nlm.nih.gov/grc/chicken/issues/$$
 
 # Local declaration so that local gap.html is picked up.
 track gap override
 html gap
 visibility hide
 
 searchTable gold
 shortCircuit 1
 termRegex [AN][AC][D0-9_][N0-9][0-9]+(\.[0-9]+)?
 query select chrom,chromStart,chromEnd,frag from %s where frag like '%s%%'
 searchPriority 8
 
 include refSeqComposite.ra
 
 include ../../crispr10K.ra
 
 include chainNetBirds.ra
 include chainNetFish.ra
 include chainNetvertebrate.ra
 include trackDb.77way.ra
 
 track dnaMethylation
 superTrack on
 shortLabel DNA Methylation
 longLabel DNA Methylation
 group regulation
 priority 3
 html dnaMethylation.html
 
 include methbase2.ra alpha
+
+include gpnStar.ra alpha