198c9b8daecc44fbda6a6494c566c723920f030a lrnassar Wed Mar 11 18:25:21 2026 -0700 Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM. diff --git src/hg/makeDb/trackDb/cv/public/cv.ra src/hg/makeDb/trackDb/cv/public/cv.ra index 59c91689fdf..9efe2e5a732 100644 --- src/hg/makeDb/trackDb/cv/public/cv.ra +++ src/hg/makeDb/trackDb/cv/public/cv.ra @@ -1,17043 +1,17043 @@ # Controlled vocabulary from ENCODE # # Human cell types, template below # -------------------------- # term human-readable cell type name. required # tag machine-readable cell type name, no special characters. required. # upnercase except for possibly a brief lowercase suffix # closely-related cell types # type informs pipeline code of stanza type. Should always be Cell Line. Required # organism used in many ways. Should correspond to a "type organism" stanza. required # description human-readable description of cell type, for cell type cellTypes.html. required # tissue general tissue type, for categorizing cell types. # all words uppercase, space separated, optional # vendorName name of vendor or lab that provides these cells. required # vendorId the ID of the cell type in the vendor's catalog. optional # orderUrl URL for ordering the cell type. Links with vendorId on cellTypes.html. required # karyotype human-readable karyotype, for .html page. optional # lineage human-readable source of cell lines, e.g. 18 year old male. optional # termId ID for best term in the BTO. Shown in cellTypes.html. optional # termUrl (URL for term in the ontology. Links with termId on cellTypes.html. optional # color specifies color code for track data of this cell type, rgb values. optional # sex used in documentation and validation. required # tier In human, specifies which table the cell type appears in in cellTypes.html. # Not used in mouse. Should correspond to a "type tier" stanza. required # protocol comma-separated list of format: tag_submittingLab_protocol.pdf. required. # category T for tissue, L for cell line, or P for primary cells. optional term GM12878 tag GM12878 type Cell Line color 153,38,0 description B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus karyotype normal lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166 organism human protocol ENCODE:GM12878_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 1 tissue blood vendorId GM12878 vendorName Coriell term K562 tag K562 type Cell Line color 46,0,184 description leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-243&Template=cellBiology organism human protocol ENCODE:K562_protocol.pdf sex F termId BTO:0000664 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000664 tier 1 tissue blood vendorId CCL-243 vendorName ATCC term K562b tag K562b type Cell Line deprecated same as K562 description leukemia (UCDavis alternate), "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-243&Template=cellBiology organism human protocol Farnham:K562_protocol.pdf sex F termId BTO:0000664 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000664 tier 1 tissue blood vendorId CCL-243 vendorName ATCC term HepG2 tag HEPG2 type Cell Line color 189,0,157 description hepatocellular carcinoma karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HB-8065&Template=cellBiology organism human protocol ENCODE:HepG2_protocol.pdf sex M termId BTO:0000599 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000599 tier 2 tissue liver vendorId HB-8065 vendorName ATCC term HepG2b tag HEPG2b type Cell Line color 189,0,157 deprecated same as HepG2 description liver carcinoma (UCDavis alternate) karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HB-8065&Template=cellBiology organism human protocol ENCODE:HepG2_protocol.pdf sex M termId BTO:0000599 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000599 tier 2 tissue liver vendorId HB-8065 vendorName ATCC term HeLa-S3 tag HELAS3 type Cell Line color 0,119,158 description cervical carcinoma karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-2.2&Template=cellBiology organism human protocol ENCODE:HeLa-S3_protocol.pdf Crawford:HeLa-S3_IFN_Crawford_protocol.pdf sex F termId BTO:0000568 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000568 tier 2 tissue cervix vendorId CCL-2.2 vendorName ATCC term HUVEC tag HUVEC type Cell Line color 224,75,0 description umbilical vein endothelial cells karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol ENCODE:HUVEC_protocol.pdf sex U termId BTO:0001949 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001949 tier 2 tissue blood vessel vendorId CC-2517 vendorName Lonza term H1-hESC tag H1HESC type Cell Line color 0,107,27 description embryonic stem cells karyotype normal lineage inner cell mass orderUrl https://ordering.wicell.org/index.php?option=com_oscommerce&Itemid=192 organism human protocol ENCODE:H1-hESC_Bernstein_protocol.pdf sex M termId CL:0000007 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CL&termId=CL0000007&termName=early%20embryonic%20cell tier 1 tissue embryonic stem cell vendorId WA01 vendorName WiCell Research Institute term H1-neurons tag H1NEURONS type Cell Line description neurons derived from H1 embryonic stem cells, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage ectoderm orderUrl TBD organism human protocol Cellular_Dynamics_International_Batch_1:H1_Neurons_Round1.pdf Cellular_Dynamics_International_Batch_2:H1_Neurons_Round2.pdf sex M termId BTO:0000938 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000938 tier 2 tissue neurons vendorId TBD vendorName CDI term LHCN-M2 tag LHCNM2 type Cell Line description skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis. lineage mesoderm orderUrl http://www.utsouthwestern.edu/findfac/professional/0,,18156,00.html organism human protocol Wold:LHCNM2_Wold_protocol.pdf sex M termId BTO:0005046 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO:0005046 tier 2 tissue skeletal muscle myoblast vendorId Missing vendorName Dr. Woodring Wright term 8988T tag 8988T type Cell Line description pancreas adenocarcinoma (PA-TU-8988T), "established in 1985 from the liver metastasis of a primary pancreatic adenocarcinoma from a 64-year-old woman" - DSMZ karyotype cancer lineage endoderm orderUrl http://www.dsmz.de/human_and_animal_cell_lines/info.php?dsmz_nr=162&term=162&highlight= organism human protocol Crawford:8988T_Crawford_protocol.pdf sex F termId BTO:0001521 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001521 tier 3 tissue liver vendorId ACC 162 vendorName DSMZ term A549 tag A549 type Cell Line description epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis karyotype cancer lineage endoderm lots 58483235 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-185&Template=cellBiology organism human protocol Myers:A549_protocol.pdf Crawford:A549_Crawford_protocol.pdf Stam:A549_Stam_protocol.pdf sex M termId BTO:0000018 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000018 tier 2 tissue epithelium vendorId CCL-185 vendorName ATCC term AG04449 tag AG04449 type Cell Line description fetal buttock/thigh fibroblast karyotype normal orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04449 organism human protocol Stam:AG04449_Stam_protocol.pdf sex M termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId AG04449 vendorName Coriell term AG04450 tag AG04450 type Cell Line description fetal lung fibroblast karyotype normal lineage endoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04450 organism human protocol Stam:AG04450_Stam_protocol.pdf sex M termId BTO:0000763 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763 tier 3 tissue lung vendorId AG04450 vendorName Coriell term AG09309 tag AG09309 type Cell Line description adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09309 organism human protocol Stam:AG09309_Stam_protocol.pdf sex F termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId AG09309 vendorName Coriell term AG09319 tag AG09319 type Cell Line description gum tissue fibroblasts from apparently heathly 24 year old karyotype normal orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09319 organism human protocol Stam:AG09319_Stam_protocol.pdf sex F termId BTO:0004138 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004138 tier 3 tissue gingival vendorId AG09319 vendorName Coriell term AG10803 tag AG10803 type Cell Line description abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG10803 organism human protocol Stam:AG10803_Stam_protocol.pdf sex M termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId AG10803 vendorName Coriell term Adult_CD4_naive tag ADULTCD4NAIVE type Cell Line label T cells CD4+ naive adult childOf T_cells_CD4+ description CD4+ cells isolated from human blood and enriched for naive populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford_Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Adult_CD4_naive vendorName Dr. David Randolph at University of Alabama, Birmingham term Adult_CD4_Th0 tag ADULTCD4TH0 type Cell Line label T cells CD4+ Th0 adult childOf T_cells_CD4+ description CD4+ cells isolated from human blood and enriched for Th0 populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford:AdultCD4Th0_Crawford_protocol.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Adult_CD4_Th0 vendorName Dr. David Randolph at University of Alabama, Birmingham term Adult_CD4_Th1 tag ADULTCD4TH1 type Cell Line label T cells CD4+ Th1 adult childOf T_cells_CD4+ description CD4+ cells isolated from human blood and enriched for Th1 populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford_Stam:HumanTh1_Th2_Th17_NaiveCD4_SOP_v1b_1.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Adult_CD4_Th1 vendorName Dr. David Randolph at University of Alabama, Birmingham term AoAF tag AOAF type Cell Line description aortic adventitial fibroblast cells karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:AoAF_Stam_protocol.pdf sex F termId BTO:0000135 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000135 tier 3 tissue blood vessel vendorId CC-7014, CC-7014T75 vendorName Lonza term AoSMC tag AOSMC type Cell Line description aortic smooth muscle cells karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Crawford:AoSMC_Crawford_protocol.pdf sex U termId BTO:0001685 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001685 tier 3 tissue blood vessel vendorId CC-2571 vendorName Lonza term Astrocy tag ASTRO type Cell Line deprecated same as NH-A description astrocytes, Astrocy is the same as cell line NH-A karyotype normal lineage ectoderm orderUrl http://www.lonza.com/ organism human protocol Crawford:Astrocytes_Crawford_protocol.pdf sex U termId BTO:0000099 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000099 tier 3 tissue brain vendorId CC-2565 vendorName Lonza term BC_Adipose_UHN00001 tag BCADIPOSE type Cell Line label Adipose BC UHN00001 description adipose tissue, donor UHN0001, age 35, African American, DNA extract karyotype normal orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001487 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001487 tier 3 tissue adipose tissue vendorId D4234003_A701166 vendorName BioChain term BC_Adrenal_Gland_H12803N tag BCADRENAL type Cell Line label Adrenal Gland BC H12803N description adrenal gland, donor H12803N, age 88, caucasian, DNA extract karyotype normal lineage ectoderm, mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000047 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000047 tier 3 tissue adrenal gland vendorId D1234004_B103117 vendorName BioChain term BC_Bladder_01-11002 tag BCBLADDER type Cell Line label Bladder BC 01-11002 description urinary bladder, donor 01-11002, age 83, caucasian, DNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001418 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001418 tier 3 tissue urinary bladder vendorId CP-S12-D1234010-05_B402059 vendorName BioChain term BC_Brain_H11058N tag BCBRAIN type Cell Line label Brain BC H11058N description brain, donor H11058N, age 66, Asian, DNA extract karyotype normal lineage ectoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000142 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000142 tier 3 tissue brain vendorId D4234035_A810101 vendorName BioChain term BC_Breast_02-03015 tag BCBREAST type Cell Line label Breast BC 02-03015 description breast, donor 02-03015, age 21, caucasian, DNA extract karyotype normal lineage ectoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000149 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000149 tier 3 tissue breast vendorId D4234086_A710031 vendorName BioChain term Colon_BC tag COLONBC type Cell Line label Colon BC description colon, parent cell type to donors BC_01-11002 and BC_H12817N karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0000269 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000269 tier 3 tissue colon vendorId CP-S12-D1234090-05_A903056; CP-S10-R1234090-20_B402074; CP-S13-D1234090-05_B111123; CP-S10-R1234090-20_B111053 vendorName BioChain; BioChain; BioChain; BioChain term BC_Colon_01-11002 tag BCCOLON type Cell Line label Colon BC 01-11002 childOf Colon_BC description colon, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000269 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000269 tier 3 tissue colon vendorId CP-S12-D1234090-05_A903056; CP-S10-R1234090-20_B402074 vendorName BioChain; BioChain term BC_Colon_H12817N tag BCCOLONb type Cell Line label Colon BC H12817N childOf Colon_BC description colon, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000269 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000269 tier 3 tissue colon vendorId CP-S13-D1234090-05_B111123; CP-S10-R1234090-20_B111053 vendorName BioChain; BioChain term Esophagus_BC tag ESOPHAGUSBC type Cell Line label Esophagus BC description esophagus, parental cell type to donors 01-11002 and H12817N karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0000959 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000959 tier 3 tissue esophagus vendorId CP-S12-D1234106-05_A803198; CP-S10-R1234106-20_B402075; CP-S13-D1234106-05_B302113 vendorName BioChain; BioChain; BioChain; BioChain term BC_Esophagus_01-11002 tag BCESOPHAGUS type Cell Line label Esophagus BC 01-11002 childOf Esophagus_BC description esophagus, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000959 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000959 tier 3 tissue esophagus vendorId CP-S12-D1234106-05_A803198; CP-S10-R1234106-20_B402075 vendorName BioChain; BioChain term BC_Esophagus_H12817N tag BCESOPHAGUSb type Cell Line label Esophagus BC H12817N childOf Esophagus_BC description esophagus, donor H12817N, age 71, caucasian, DNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000959 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000959 tier 3 tissue esophagus vendorId CP-S13-D1234106-05_B302113 vendorName BioChain term BC_Jejunum_H12817N tag BCJEJUNUM type Cell Line label Jejunum BC H12817N description jejunum, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000657 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000657 tier 3 tissue jejunum vendorId CP-S13-D1234230-05_B402068; CP-S10-R1234230-20_A911037 vendorName BioChain; BioChain term Kidney_BC tag KIDNEYBC type Cell Line label Kidney BC description kidney, parental cell type to donors 01-11002 and H12817N karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0000671 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000671 tier 3 tissue kidney vendorId CP-S12-D1234142-05_B402060; CP-S10-R1234142-20_A808055; CP-S13-D1234142-05_B402061; CP-S10-R1234142-20_B111054 vendorName BioChain; BioChain; BioChain; BioChain term BC_Kidney_01-11002 tag BCKIDNEY type Cell Line label Kidney BC 01-11002 childOf Kidney_BC description kidney, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000671 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000671 tier 3 tissue kidney vendorId CP-S12-D1234142-05_B402060; CP-S10-R1234142-20_A808055 vendorName BioChain; BioChain term BC_Kidney_H12817N tag BCKIDNEYb type Cell Line label Kidney BC H12817N childOf Kidney_BC description kidney, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000671 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000671 tier 3 tissue kidney vendorId CP-S13-D1234142-05_B402061; CP-S10-R1234142-20_B111054 vendorName BioChain; BioChain term BC_Left_Ventricle_N41 tag BCLEFVENTRI type Cell Line label Left Ventricle BC N41 description left ventricle, donor N41, age 26, Asian, DNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001629 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001629 tier 3 tissue left ventricle vendorId D1234138_A705026 vendorName BioChain term BC_Leukocyte_UHN00204 tag BCLEUKOCYTE type Cell Line label Leukocyte BC UHN00204 description peripheral blood mononuclear cell, donor UHN00204, age 54, caucasian, DNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001025 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001025 tier 3 tissue blood vendorId D4234148_A612197 vendorName BioChain term BC_Liver_01-11002 tag BCLIVER type Cell Line label Liver BC 01-11002 description liver, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000759 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000759 tier 3 tissue liver vendorId CP-S12-D1234149-05_B209118; CP-S10-R1234149-20_B304045 vendorName BioChain; BioChain term Lung_BC tag LUNGBC type Cell Line label Lung BC description lung, parental cell type to donors 01-11002 and H12817N karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0000763 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763 tier 3 tissue lung vendorId CP-S12-D1234152-05_A610240; CP-S10-R1234152-20_A906114; CP-S13-D1234152-05_B402062; CP-S10-R1234152-20_B207133 vendorName BioChain; BioChain; BioChain; BioChain term BC_Lung_01-11002 tag BCLUNG type Cell Line label Lung BC 01-11002 childOf Lung_BC description lung, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000763 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763 tier 3 tissue lung vendorId CP-S12-D1234152-05_A610240; CP-S10-R1234152-20_A906114 vendorName BioChain; BioChain term BC_Lung_H12817N tag BCLUNGb type Cell Line label Lung BC H12817N childOf Lung_BC description lung, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000763 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763 tier 3 tissue lung vendorId CP-S13-D1234152-05_B402062; CP-S10-R1234152-20_B207133 vendorName BioChain; BioChain term BC_Pancreas_H12817N tag BCPANCREAS type Cell Line label Pancreas BC H12817N description pancreas, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000988 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000988 tier 3 tissue pancreas vendorId CP-S13-D1234188-05_B402063; CP-S10-R1234188-20_B402076 vendorName BioChain; BioChain term BC_Penis_H12817N tag BCPENIS type Cell Line label Penis BC H12817N description penis, donor H12817N, age 71, caucasian, DNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0000405 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000405 tier 3 tissue penis vendorId CP-S13-D1234194-05_B402064 vendorName BioChain term BC_Pericardium_H12529N tag BCPERICARDIUM type Cell Line label Pericardium BC H12529N description pericardium, donor H12529N, age 70, caucasian, DNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000717 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000717 tier 3 tissue pericardium vendorId D1234133_A712271 vendorName BioChain term BC_Placenta_UHN00189 tag BCPLACENTA type Cell Line label Placenta BC UHN00189 description placenta, donor UHN00189, age 29 karyotype normal lineage extraembryonic mesoderm, trophectoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001078 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001078 tier 3 tissue placenta vendorId D4234200_A603104 vendorName BioChain term BC_Prostate_Gland_H12817N tag BCPROSTATE type Cell Line label Prostate Gland BC H12817N description prostate gland, donor H12817N, age 71, caucasian, DNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001129 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001129 tier 3 tissue prostate gland vendorId CP-D1234201-05_B101058 vendorName BioChain term BC_Rectum_N29 tag BCRECTUM type Cell Line label Rectum BC N29 description rectum, donor N29, age 29, Asian, DNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001158 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001158 tier 3 tissue rectum vendorId D4234206_A712205 vendorName BioChain term Skeletal_Muscle_BC tag SKELBC type Cell Line label Skeletal Muscle BC description skeletal muscle, parental cell type to donors 01-11002 and H12817N karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0001103 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001103 tier 3 tissue skeletal muscle vendorId CP-S12-D1234171-05_A610262; CP-S10-R1234171-20_A808148; CP-S13-D1234171-05_B402065; CP-S10-R1234230-20_A911037 vendorName BioChain; BioChain; BioChain; BioChain term BC_Skeletal_Muscle_01-11002 tag BCSKEL type Cell Line label Skeletal Muscle BC 01-11002 childOf Skeletal_Muscle_BC description skeletal muscle, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001103 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001103 tier 3 tissue skeletal muscle vendorId CP-S12-D1234171-05_A610262; CP-S10-R1234171-20_A808148 vendorName BioChain; BioChain term BC_Skeletal_Muscle_H12817N tag BCSKELb type Cell Line label Skeletal Muscle BC H12817N childOf Skeletal_Muscle_BC description skeletal muscle, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001103 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001103 tier 3 tissue skeletal muscle vendorId CP-S13-D1234171-05_B402065; CP-S10-R1234230-20_A911037 vendorName BioChain; BioChain term BC_Skin_01-11002 tag BCSKIN type Cell Line label Skin BC 01-11002 description skin, donor 01-11002, age 83, caucasian, DNA extract karyotype normal lineage ectoderm, mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId CP-S12-D1234218-05_B402066 vendorName BioChain term BC_Small_Intestine_01-11002 tag BCSMINTESTINE type Cell Line label Small Intestine BC 01-11002 description small intestine, donor 01-11002, age 83, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0000651 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000651 tier 3 tissue small intestine vendorId CP-S12-D1234226-05_B402067; CP-S10-R1234226-20_A612138 vendorName BioChain; BioChain term BC_Spleen_H12817N tag BCSPLEENb type Cell Line label Spleen BC H12817N description spleen, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001281 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001281 tier 3 tissue spleen vendorId CP-S13-D1234246-05_B402069; CP-S10-R1234246-20_B304070 vendorName BioChain; BioChain term Stomach_BC tag STOMACHBC type Cell Line label Stomach BC description stomach, parental cell type to donors 01-11002 and H12817N karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex B termId BTO:0001307 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001307 tier 3 tissue stomach vendorId CP-S12-D1234248-05_A808008; CP-S13-D1234248-05_B402070; CP-S10-R1234248-20_B402077 vendorName BioChain; BioChain; BioChain term BC_Stomach_01-11002 tag BCSTOMACH type Cell Line label Stomach BC 01-11002 childOf Stomach_BC description stomach, donor 01-11002, age 83, caucasian, DNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001307 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001307 tier 3 tissue stomach vendorId CP-S12-D1234248-05_A808008 vendorName BioChain term BC_Stomach_H12817N tag BCSTOMACHb type Cell Line label Stomach BC H12817N childOf Stomach_BC description stomach, donor H12817N, age 71, caucasian, DNA and RNA extract karyotype normal lineage endoderm orderUrl http://www.biochain.com; http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001307 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001307 tier 3 tissue stomach vendorId CP-S13-D1234248-05_B402070; CP-S10-R1234248-20_B402077 vendorName BioChain; BioChain term BC_Testis_N30 tag BCTESTIS type Cell Line label Testis BC N30 description testis, donor N30, age 41, Asian, DNA extract karyotype normal lineage mesoderm orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex M termId BTO:0001363 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001363 tier 3 tissue testis vendorId D4234260_A711169 vendorName BioChain term BC_Uterus_BN0765 tag BCUTERUS type Cell Line label Uterus BC BN0765 description uterus, donor BN0765, age 44, Asian, DNA extract karyotype normal orderUrl http://www.biochain.com organism human protocol Myers:Myers_BioChain_protocol.pdf sex F termId BTO:0001424 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001424 tier 3 tissue uterus vendorId D4234274_A810099 vendorName BioChain term BE2_C tag BE2C type Cell Line label BE(2)-C description neuroblastoma, BE-C is a clone of the SK-N-BE neuroblastoma cell line (see ATCC CRL-2271) that was established in November of 1972 from a bone marrow biopsy taken from a 2-year-old individual with disseminated neuroblastoma after repeated courses of chemotherapy and radiotherapy. karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2268&Template=cellBiology organism human protocol Stam:BE2-C_Stam_protocol.pdf Myers:BE2-C_Myers_protocol.pdf sex M termId BTO:0001620 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001620&termName=SK-N-SH%20cell tier 3 tissue brain vendorId CRL-2268 vendorName ATCC term BG02ES tag BG02ES type Cell Line description embryonic stem cell (hESC), BG02, treatment: H9 conditioned medium karyotype normal lineage inner cell mass orderUrl http://stemcells.nih.gov/staticresources/research/protocols/BresaGen_hESC_manual_2.1.pdf organism human protocol Myers:BG02ES_and_H9ES_Myers_protocols.pdf sex M termId BTO:0001086 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001086 tier 3 tissue embryonic stem cell vendorId BG02 (hESBGN.02) vendorName BresaGen, Inc. term BG02ES-EBD tag BG02ESEBD type Cell Line childOf BG02ES description embryonic stem cell (hESC), BG02, embryoid body-derived karyotype normal lineage inner cell mass orderUrl http://stemcells.nih.gov/staticresources/research/protocols/BresaGen_hESC_manual_2.1.pdf organism human protocol Myers:BG02ES_and_H9ES_Myers_protocols.pdf sex M termId BTO:0001086 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001086 tier 3 tissue embryonic stem cell vendorId BG02 (hESBGN.02) vendorName BresaGen, Inc. term BJ tag BJ type Cell Line description skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803) karyotype normal orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2522&Template=cellBiology organism human protocol Stam:BJ_Stam_protocol.pdf sex M termId BTO:0001255 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001255 tier 3 tissue skin vendorId CRL-2522 vendorName ATCC term Breast_OC tag BREASTOC type Cell Line description Primary frozen breast tissue from NCTC donor IDs 11-0068A (Rep B1) and 11-0067A (Rep B2), both African American karyotype normal lab Crawford orderUrl http://www.ecu.edu/cs-dhs/med/NcTissueConsortium.cfm organism human protocol Crawford:BreastOC_Crawford_protocol.pdf sex F termId BTO:0000149 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000149 tier 3 tissue breast vendorId 11-0068A; 11-0067A vendorName NCTC term CD14+ tag CD14 type Cell Line label Monocytes CD14+ deprecated same as Monocytes-CD14+ description SEE Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://labs.fhcrc.org/heimfeld/contact.html organism human protocol Stam:MonoCD14_Stam_protocol.pdf sex F termId BTO:0000876 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000876 tier 2 tissue monocytes vendorId Monocytes-CD14+ vendorName S. Heimfeld Laboratory, FHCRC term CD20+ tag CD20 type Cell Line label B-cells CD20+ description B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://labs.fhcrc.org/heimfeld/index.html organism human protocol Stam:CD20+_Stam_protocol.pdf sex F termId BTO:0000776 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000776&termName=B-lymphocyte tier 2 tissue blood vendorId CD20+ vendorName Dr. Heimfeld Lab at FHCRC term CD20+_RO01778 tag CD20RO01778 type Cell Line label B-cells CD20+ (RO01778) age 43 childOf CD20+ description B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://depts.washington.edu/medgen/faculty/Rajinder_Kaul.shtml organism human protocol Stam:CD20+_Stam_protocol.pdf sex F termId BTO:0000776 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000776&termName=B-lymphocyte tier 2 tissue blood vendorId CD20+_RO01778 vendorName Rajinder Kaul, UW term CD20+_RO01794 tag CD20RO01794 type Cell Line label B cells CD20+ RO01794 age 27 childOf CD20+ description B cells, African American, draw number 1, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://depts.washington.edu/medgen/faculty/Rajinder_Kaul.shtml organism human protocol Stam:CD20+_Stam_protocol.pdf sex F termId BTO:0000776 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000776&termName=B-lymphocyte tier 2 tissue blood vendorId CD20+_RO01794 vendorName Rajinder Kaul, UW term CD34+_Mobilized tag CD34MOBILIZED type Cell Line label CD34+ Mobilized description hematopoietic progenitor cells- mobilized, from donor RO01679. orderUrl http://labs.fhcrc.org/heimfeld/index.html organism human protocol Stam:CD34+Mobilized_Stam_protocol.pdf sex M termId BTO:0000725 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000725 tier 3 tissue blood vendorId FHCRC vendorName Dr. Heimfeld Lab at FHCRC term CD4+_Naive_Wb11970640 tag CD4NAIVEWB11970640 type Cell Line description CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Crawford_Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex M termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0000782 tier 3 tissue blood vendorId Wb11970640 vendorName Dr. John Stamatoyannopoulos at UW term CD4+_Naive_Wb78495824 tag CD4NAIVEWB78495824 type Cell Line description CD4+ naive sorted cells, donor is Causasian, female 35 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Crawford_Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex F termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0000782 tier 3 tissue blood vendorId Wb78495824 vendorName Dr. John Stamatoyannopoulos at UW term GC_B_cell tag GCBCELL type Cell Line description Germinal center B cells (CD77+) isolated from de-identified tonsillectomy karyotype normal lab Crawford orderUrl http://melnicklaboratory.med.cornell.edu/people/yanwenjiang.php organism human protocol Crawford:GCBcell_Crawford_protocol.pdf sex U termId BTO:0003671 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003671 tier 3 tissue tonsil vendorId GC_B_cell vendorName Dr. Yanwen Jiang term CLL tag CLL type Cell Line description chronic lymphocytic leukemia cell, T-cell lymphocyte karyotype cancer lineage mesoderm orderUrl http://www.dfhcc.harvard.edu/membership/profile/member/669/0/ organism human protocol Crawford:CLL_Crawford_protocol.pdf sex F termId BTO:0001546 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001546 tier 3 tissue blood vendorId CLL vendorName Dr. Jennifer Brown at Harvard Medical School. term Caco-2 tag CACO2 type Cell Line description colorectal adenocarcinoma. (PMID: 1939345) karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-37&Template=cellBiology organism human protocol Stam:Stam_15_protocols.pdf sex M termId BTO:0000195 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000195 tier 3 tissue colon vendorId HTB-37 vendorName ATCC term Cerebellum_OC tag CEREBELLUMOC type Cell Line description Primary frozen cerebellum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:CerebellumOC_Crawford_protocol.pdf sex M termId BTO:0000232 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000232 tier 3 tissue cerebellum vendorId 1104; 602; 1442 vendorName NICHD term Cerebrum_frontal_OC tag CEREBRUMFRONTALOC type Cell Line description Primary frozen frontal cerebrum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:CerebrumfrontalOC_Crawford_protocol.pdf sex M termId BTO:0000239 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000239 tier 3 tissue frontal cerebrum vendorId 1104; 602; 1442 vendorName NICHD term Chorion tag CHORION type Cell Line description chorion cells (outermost of two fetal membranes), fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes. lineage extraembryonic mesoderm, trophectoderm orderUrl http://www.dukehealth.org/physicians/amy_p_murtha organism human protocol Crawford:Chorion_and_decidua_Crawford_protocol.pdf sex U termId BTO:0000252 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000252 tier 3 tissue fetal membrane vendorName Dr. Amy Murtha at Duke University term CMK tag CMK type Cell Line description acute megakaryocytic leukemia cells, "established from the peripheral blood of a 10-month-old boy with Down's syndrome and acute megakaryocytic leukemia (AML M7) at relapse in 1985" - DSMZ. (PMID: 3016165) karyotype cancer lineage mesoderm orderUrl http://www.dsmz.de/human_and_animal_cell_lines/info.php?dsmz_nr=392&from=cell_line_index&select=search_for_term&term=CMK&preselect=human;hamster;mouse;rat;insect;other&firstload=0 organism human protocol Stam:CMK_Stam_protocol.pdf sex M termId BTO:0004962 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004962&termName=acute%20megakaryocytic%20leukemia%20cell tier 3 tissue blood vendorId ACC-392 vendorName DSMZ term Colo829 tag COLO829 type Cell Line description malignant melanoma karyotype cancer lab Crawford orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1974&Template=cellBiology organism human protocol Crawford:Colo829_Crawford_protocol.pdf sex M termId BTO:0000849 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000849&termName=melanoma%20cell%20line tier 3 tissue skin vendorId CRL-1974 vendorName ATCC term Colon_OC tag COLONOC type Cell Line label Colon OC description Primary frozen colon tissue from NCTC donor IDs 10-0005A (Rep B1) and 10-0170A (Rep B2), African American and caucasian karyotype normal lab Crawford orderUrl http://www.ecu.edu/cs-dhs/med/NcTissueConsortium.cfm organism human protocol Crawford:ColonOC_Crawford_protocol.pdf sex B termId BTO:0000269 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000269 tier 3 tissue colon vendorId 10-0005A; 10-0170A vendorName NCTC term Cord_CD4_naive tag CORDCD4NAIVE type Cell Line label T cells CD4+ naive cord blood childOf T_cells_CD4+ description CD4+ cells isolated from cord blood and enriched for naive populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford_Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Cord_CD4_naive vendorName Dr. David Randolph at University of Alabama, Birmingham term Cord_CD4_Th0 tag CORDCD4TH0 type Cell Line label T cells CD4+ Th0 cord blood childOf T_cells_CD4+ description CD4+ cells isolated from cord blood and enriched for Th0 populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford:CordCD4Th0_Crawford_protocol.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Cord_CD4_Th0 vendorName Dr. David Randolph at University of Alabama, Birmingham term Cord_CD4_Th1 tag CORDCD4TH1 type Cell Line label T cells CD4+ Th1 cord blood childOf T_cells_CD4+ description CD4+ cells isolated from cord blood and enriched for Th1 populations karyotype normal lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford_Stam:HumanTh1_Th2_Th17_NaiveCD4_SOP_v1b_1.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId Cord_CD4_Th1 vendorName Dr. David Randolph at University of Alabama, Birmingham term Decidua tag DECIDUA type Cell Line description decidua cells (part of the mucous membrane lining uterus), Fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes lineage decidua orderUrl http://www.dukehealth.org/physicians/amy_p_murtha organism human protocol Crawford:Chorion_and_decidua_Crawford_protocol.pdf sex F termId BTO:0001360 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001360 tier 3 tissue cervix vendorName Dr. Amy Murtha at Duke University (Durham, NC). term Dnd41 tag DND41 type Cell Line description T cell leukemia with Notch mutation karyotype cancer lineage mesoderm orderUrl http://www.dsmz.de/index.htm organism human protocol Bernstein:Dnd41_Bernstein_protocol.pdf sex M termId BTO:0001106 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001106&termName=T-cell%20leukemia%20cell tier 3 tissue blood vendorId Dnd41 vendorName DSMZ term ECC-1 tag ECC1 type Cell Line description epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2923&Template=cellBiology organism human protocol Myers:ECC1_Myers_protocol.pdf sex F termId BTO:0000194 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000194 tier 3 tissue luminal epithelium vendorId CRL-2923 vendorName ATCC term Endometrium_OC tag ENDOMETRIUMOC type Cell Line label Endometrium OC description Endometrium isolated from uterine lining karyotype normal lab Crawford orderUrl http://findadoc.unchealthcare.org/details/1864 organism human protocol Crawford:EndometriumOC_Crawford_protocol.pdf sex F termId BTO:0001422 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001422 tier 3 tissue endometrium vendorId Endometrium_OC vendorName Dr. Steven Young term Fibrobl tag FIBROBL type Cell Line description child fibroblast karyotype normal orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG08470&PgId=166 organism human protocol Crawford:fibroblast_Crawford_protocol.pdf sex F termId BTO:0000452 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000452 tier 3 tissue skin vendorId AG08470 vendorName Coriell term FibroP tag FIBROP type Cell Line description fibroblasts taken from individuals with Parkinson's disease, AG20443, AG08395 and AG08396 were pooled for this sample karyotype normal orderUrl http://genetics.case.edu/page.php?page_id=5&LN=Tesar&FN=Paul organism human protocol Crawford:FibroP_Crawford_protocol.pdf sex U termId BTO:0000452 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000452 tier 3 tissue skin vendorId FibroP vendorName Paul Tesar at Case Western University term FibroP_AG20443 tag FIBROPAG20443 type Cell Line description fibroblasts taken from individuals with Parkinson's disease lab Crawford orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG20443&PgId=166 organism human protocol Crawford:FibroP_Crawford_protocol.pdf sex M termId BTO:0000452 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000452 tier 3 tissue skin fibroblast vendorId AG20443 vendorName Coriell term FibroP_AG08395 tag FIBROPAG08395 type Cell Line description fibroblasts taken from individuals with Parkinson's disease lab Crawford orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG08395&PgId=166 organism human protocol Crawford:FibroP_Crawford_protocol.pdf sex F termId BTO:0000452 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000452 tier 3 tissue skin fibroblast vendorId AG08395 vendorName Coriell term FibroP_AG08396 tag FIBROPAG08396 type Cell Line description fibroblasts taken from individuals with Parkinson's disease lab Crawford orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG08396&PgId=166 organism human protocol Crawford:FibroP_Crawford_protocol.pdf sex F termId BTO:0000452 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000452 tier 3 tissue lung fibroblast vendorId AG08396 vendorName Coriell term Frontal_cortex_OC tag FRONTALCORTEXOC type Cell Line label Frontal cortex OC description Primary ventromedial prefrontal cortex, from KPBBB donor IDs 673 (Rep B1) and 913 (Rep B2) karyotype normal lab Crawford orderUrl https://adrc.mc.duke.edu/index.php/research/brain-bank organism human protocol Crawford:FrontalcortexOC_Crawford_protocol.pdf sex F termId BTO:0000484 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000484 tier 3 tissue frontal cortex vendorId 673; 913 vendorName Kathleen Price Bryan Brain term Gliobla tag GLIOBLA type Cell Line description glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524) karyotype cancer lineage ectoderm orderUrl http://www.cancer.duke.edu/btc/modules/facultystaff1/index.php?id=85 organism human protocol Crawford:D54_Crawford_protocol.pdf sex U termId BTO:0000527 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000527 tier 3 tissue brain vendorId D54 vendorName Dr. Darrell Bigner at Duke University Medical Center term Fibrobl_GM03348 tag FIBROBLGM03348 type Cell Line description skin fibroblast karyotype normal lab Crawford orderUrl http://ccr.coriell.org/ organism human protocol Crawford:FibroblGM03348_Crawford_protocol.pdf sex M termId BTO:0001255 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001255 tier 3 tissue skin vendorId GM03348 vendorName Coriell term GM04503 tag GM04503 type Cell Line description adult twin pair fibroblasts, monozygotic twin of GM04504 karyotype normal lab Stam orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM04503&PgId=166 organism human protocol Stam:GM04503D_Stam_protocol.pdf sex F termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId GM04503D vendorName Coriell term GM04504 tag GM04504 type Cell Line description adult twin pair fibroblasts, monozygotic twin of GM04503, 13% of the cells examined show random chromosome loss karyotype normal lab Stam orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM04504&PgId=166 organism human protocol Stam:GM04504A_Stam_protocol.pdf sex F termId BTO:0001253 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001253 tier 3 tissue skin vendorId GM04504A vendorName Coriell term GM06990 tag GM06990 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06990&PgId=166 organism human protocol Stam:Stam_15_protocols.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM06990 vendorName Coriell term GM08714 tag GM08714 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid cell line, Instability of heterochromatin of chromosomes 1, 9, and 16 with variable combined immunodeficiency; dysmorphic facial features, developmental delay, malabsorption, and recurrent infections; see GM08747 Fibroblast; donor subject is a compound heterozygote: one allele has a G>A transition at nucleotide 1807 (1807G>A) of the DNMT3B gene resulting in an Ala to Thr substitution at codon 603 [Ala603Thr (A603T)], the mutation occurring in a region between motifs I and IV within the catalytic domain of DNMT3B; the second allele has a G>A transition within intron 22 located 11 nucleotides 5-prime of the normal splice acceptor site [IVS22AS,G>A,-11] resulting in the generation of a novel splice acceptor site and a 9-bp insertion in the processed RNA. This results in the insertion of 3 amino acids (serine, threonine, and proline) at codon 744 (744ins3). The insertion was within the conserved region of the catalytic domain, which is likely to be disrupted by the insertion of a proline residue. This mutation was de novo. lab Farnham lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM08714&PgId=166 organism human protocol Farnham:GM08714_Farnham_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002062 tier 3 tissue blood vendorId GM08714 vendorName Coriell term GM10248 tag GM10248 type Cell Line description lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12) karyotype normal lab Crawford lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM10248&PgId=166 organism human protocol Crawford:GM10248_Crawford_protocol.pdf sex M termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002062 tier 3 tissue blood vendorId GM10248 vendorName Coriell term GM10266 tag GM10266 type Cell Line description lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12) karyotype affected lab Crawford lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM10266&PgId=166 organism human protocol Crawford:GM10266_Crawford_protocol.pdf sex M termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002062 tier 3 tissue blood vendorId GM10266 vendorName Coriell term GM10847 tag GM10847 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM10847 organism human protocol Snyder:GM-generalized_Snyder_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM10847 vendorName Coriell term GM12801 tag GM12801 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12801&PgId=166 organism human protocol Stam:GM12801_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12801 vendorName Coriell term GM12812 tag GM12812 type Cell Line childOf Lymphoblastoid_cell_line description B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12812&PgId=166 organism human protocol Stam:GM12812_Stam_protocol.pdf sex M termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12812 vendorName Coriell term GM12813 tag GM12813 type Cell Line childOf Lymphoblastoid_cell_line description B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12813&PgId=166 organism human protocol Stam:GM12813_Stam_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12813 vendorName Coriell term GM12864 tag GM12864 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12864&PgId=166 organism human protocol Stam:GM12864_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12864 vendorName Coriell term GM12865 tag GM12865 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/sections/Search/Sample_Detail.aspx?Ref=GM12865&PgId=166 organism human protocol Stam:GM12865_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12865 vendorName Coriell term GM12866 tag GM12866 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12866&PgId=166 organism human protocol Stam:GM12866_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12866 vendorName Coriell term GM12867 tag GM12867 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12867&PgId=166 organism human protocol Stam:GM12867_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12867 vendorName Coriell term GM12868 tag GM12868 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12868&PgId=166 organism human protocol Stam:GM12868_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12868 vendorName Coriell term GM12869 tag GM12869 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12869&PgId=166 organism human protocol Stam:GM12869_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12869 vendorName Coriell term GM12870 tag GM12870 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12870&PgId=166 organism human protocol Stam:GM12870_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12870 vendorName Coriell term GM12871 tag GM12871 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. lab Stam lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12871&PgId=166 organism human protocol Stam:GM12871_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM12871 vendorName Coriell term GM12872 tag GM12872 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872&PgId=166 organism human protocol Stam:GM12872_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12872 vendorName Coriell term GM12873 tag GM12873 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873&PgId=166 organism human protocol Stam:GM12873_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12873 vendorName Coriell term GM12874 tag GM12874 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12874&PgId=166 organism human protocol Stam:GM12874_Stam_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12874 vendorName Coriell term GM12875 tag GM12875 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875&PgId=166 organism human protocol Stam:GM12875_Stam_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12875 vendorName Coriell term GM12878-XiMat tag GM12878Xb type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, cloned for maternal X inactivation, International HapMap Project, CEPH/Utah, Epstein-Barr Virus karyotype normal lineage mesoderm orderUrl http://www.genome.duke.edu/people/faculty/willard/ organism human protocol Myers:GM12878-XiMat_Myers_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12878-XiMat vendorName Hunt Willard at Duke University term GM12891 tag GM12891 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12891 organism human protocol Crawford:GM12891_Crawford_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12891 vendorName Coriell term GM12892 tag GM12892 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12892 organism human protocol Crawford:GM12892_Crawford_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM12892 vendorName Coriell term GM15510 tag GM15510 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM15510 organism human protocol Snyder:GM-generalized_Snyder_protocol.pdf sex U termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM15510 vendorName Coriell term GM13976 tag GM13976 type Cell Line description lymphoblastoid cell line, clinically normal; monozygotic twin sister with Cornelia De Lange syndrome is GM13977 karyotype normal lab Crawford lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13976&PgId=166 organism human protocol Crawford:GM13976_Crawford_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002062 tier 3 tissue blood vendorId GM13976 vendorName Coriell term GM13977 tag GM13977 type Cell Line description lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976 karyotype affected lab Crawford lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13977&PgId=166 organism human protocol Crawford:GM13977_Crawford_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002062 tier 3 tissue blood vendorId GM13977 vendorName Coriell term GM18505 tag GM18505 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18505 organism human protocol Snyder:GM-generalized_Snyder_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM18505 vendorName Coriell term GM18507 tag GM18507 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18507 organism human protocol ENCODE:GM18507_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM18507 vendorName Coriell term GM18526 tag GM18526 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18526 organism human protocol Snyder:GM-generalized_Snyder_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM18526 vendorName Coriell term GM18951 tag GM18951 type Cell Line childOf 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blood vendorId GM19099 vendorName Coriell term GM19193 tag GM19193 type Cell Line childOf Lymphoblastoid_cell_line description lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19193 organism human protocol Snyder:GM-generalized_Snyder_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId GM19193 vendorName Coriell term GM19238 tag GM19238 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19238 organism human protocol Crawford:GM19238_Crawford_protocol.pdf sex F termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM19238 vendorName Coriell term GM19239 tag GM19239 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage mesoderm orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19239 organism human protocol Crawford:GM19239_Crawford_protocol.pdf sex M termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062&termName=B-lymphoblastoid%20cell%20line tier 3 tissue blood vendorId GM19239 vendorName Coriell term GM19240 tag GM19240 type Cell Line childOf Lymphoblastoid_cell_line description B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed lineage 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termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001539 tier 3 tissue heart vendorId 6200 vendorName ScienCell term HCPEpiC tag HCPE type Cell Line description choroid plexus epithelial cells karyotype normal lineage ectoderm orderUrl http://www.sciencellonline.com/human-choroid-plexus-epithelial-cells.html organism human protocol Stam:HCPEpiC_Stam_protocol.pdf sex U termId BTO:0000258 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000258 tier 3 tissue epithelium vendorId 1310 vendorName ScienCell term HCT-116 tag HCT116 type Cell Line description colorectal carcinoma (PMID: 7214343) karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-247&Template=cellBiology organism human protocol ENCODE:HCT-116_protocol.pdf Stam:HCT116_Stam_protocol.pdf sex M termId BTO:0002254 termUrl 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HFDPC description Follicle Dermal Papilla Cells from lateral scalp (blond) karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/follicle-dermal-papilla-cells/?sword_list%5B%5D=HFDPC organism human protocol Gingeras:HFDPC0102703.3_Gingeras_protocol.pdf sex F termId BTO:0001849 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001849 tier 3 tissue skin vendorId C-14005 vendorName PromoCell term HFF tag HFF type Cell Line description foreskin fibroblast karyotype normal orderUrl http://myprofile.cos.com/torokstorb organism human protocol Stam:HFF_Stam_protocol.pdf sex M termId BTO:0002245 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002245 tier 3 tissue foreskin vendorId HFF vendorName Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center term HFF-Myc tag HFFMYC type Cell Line childOf HFF description foreskin fibroblast cells expressing canine cMyc karyotype normal lineage fibroblast orderUrl http://myprofile.cos.com/torokstorb organism human protocol Stam:HFFMyc_Stam_protocol.pdf sex M termId BTO:0002245 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002245 tier 3 tissue foreskin vendorId HFF-Myc vendorName Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center term HFL11W tag HFL11W type Cell Line color 189,0,157 description fetal liver 11 weeks, consented fetal liver samples were isolated from legally aborted fetuses at 11 weeks gestation lineage endoderm orderUrl http://www.hudsonalpha.org/myers-lab organism human protocol ENCODE:HFL11W_and_HFL24W_Myers_protocols.pdf sex U termId BTO:0000759 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000759 tier 3 tissue liver vendorId HFL11W vendorName Unknown term HFL24W tag HFL24W type Cell Line color 189,0,157 description fetal liver 24 weeks, consented fetal liver samples were isolated from legally aborted 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http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001251 tier 3 tissue liver vendorId 5000 vendorName ScienCell term HIPEpiC tag HIPE type Cell Line description iris pigment epithelial cells karyotype normal lineage ectoderm orderUrl http://www.sciencellonline.com/hipepic.html organism human protocol Stam:HIPEpiC_Stam_protocol.pdf sex U termId BTO:0000653 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000653 tier 3 tissue epithelium vendorId 6560 vendorName ScienCell term HL-60 tag HL60 type Cell Line description promyelocytic leukemia cells, (PMID: 276884) karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-240&Template=cellBiology organism human protocol Stam:HL-60_Stam_protocol.pdf sex F termId BTO:0000738 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000738 tier 3 tissue blood vendorId CCL-240 vendorName 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http://www.promocell.com/nc/products/human-stem-and-blood-cells/mononuclear-cells/human-mononuclear-cells-from-cord-blood-hmnc-cb/?sword_list%5B%5D=hMNC-CB organism human protocol Gingeras:hMNCCB9111701.6_Gingeras_protocol.pdf Gingeras:hMNCCB9111701.6_Gingeras_protocol.pdf sex B termId BTO:0004054 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004054 tier 3 tissue blood vendorId hMNC-CB vendorName PromoCell term hMNC-CB_9111701.6 tag HMNCCB91117016 type Cell Line childOf hMNC-CB description Mononuclear Cells, umbilical cord blood-single donor karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-stem-and-blood-cells/mononuclear-cells/human-mononuclear-cells-from-cord-blood-hmnc-cb/?sword_list%5B%5D=hMNC-CB organism human protocol Gingeras:hMNCCB9111701.6_Gingeras_protocol.pdf sex F termId BTO:0004054 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004054 tier 3 tissue blood vendorId C-14096 vendorName PromoCell term hMNC-CB_8072802.6 tag HMNCCB80728026 type Cell Line childOf hMNC-CB description Mononuclear Cells, umbilical cord blood-single donor karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-stem-and-blood-cells/mononuclear-cells/human-mononuclear-cells-from-cord-blood-hmnc-cb/?sword_list%5B%5D=hMNC-CB organism human protocol Gingeras:hMNCCB8072802.6_Gingeras_protocol.pdf sex M termId BTO:0004054 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004054 tier 3 tissue blood vendorId C-14096 vendorName PromoCell term hMSC-BM tag HMSCBM type Cell Line description Undifferentiated Mesenchymal Stem Cells from two individuals, hMSC-BM_0050602.11 and hMSC-BM_0051105.11 from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-bone-marrow-hmsc-bm organism human protocol Gingeras:hMSCBM0050602.11_Gingeras_protocol.pdf Gingeras:hMSCBM0051105.11_Gingeras_protocol.pdf sex B termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue bone marrow vendorId hMSC-BM vendorName PromoCell term hMSC-BM_0050602.11 tag HMSCBM005060211 type Cell Line childOf hMSC-BM description Undifferentiated Mesenchymal Stem Cells from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-bone-marrow-hmsc-bm organism human protocol Gingeras:hMSCBM0050602.11_Gingeras_protocol.pdf sex M termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue bone marrow vendorId C-14090 vendorName PromoCell term hMSC-BM_0051105.11 tag HMSCBM005110511 type Cell Line childOf hMSC-BM description Undifferentiated Mesenchymal Stem Cells from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-bone-marrow-hmsc-bm organism human protocol Gingeras:hMSCBM0051105.11_Gingeras_protocol.pdf sex F termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue bone marrow vendorId C-14090 vendorName PromoCell term hMSC-AT tag HMSCAT type Cell Line description Undifferentiated Mesenchymal Stem Cells from two individuals, hMSC-AT_9061601.12 and hMSC-AT_0102604.12 from subcutaneous abdomen adipose tissue karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-adipose-tissue-hmsc-at/?sword_list%5B%5D=hMSC-AT organism human protocol Gingeras:hMSCAT0102604.12_Gingeras_protocol.pdf Gingeras:hMSCAT9061601.12_Gingeras_protocol.pdf sex F termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue adipose vendorId hMSC-AT vendorName PromoCell term hMSC-AT_9061601.12 tag HMSCAT906160112 type Cell Line childOf hMSC-AT description Undifferentiated Mesenchymal Stem Cells from abdomen karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-adipose-tissue-hmsc-at/?sword_list%5B%5D=hMSC-AT organism human protocol Gingeras:hMSCAT9061601.12_Gingeras_protocol.pdf sex F termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue subcutaneous adipose tissue vendorId C-14092 vendorName PromoCell term hMSC-AT_0102604.12 tag HMSCAT010260412 type Cell Line childOf hMSC-AT description Undifferentiated Mesenchymal Stem Cells from subcutaneous 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matrix (Wharton's Jelly) karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-stem-and-blood-cells/mesenchymal-stem-cells/human-mesenchymal-stem-cells-from-umbilical-cord-matrix-hmsc-uc/?sword_list%5B%5D=hMSC-UC organism human protocol Gingeras:hMSCUC0052501.7_Gingeras_protocol.pdf sex M termId BTO:0003298 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003298 tier 3 tissue umbilical cord vendorId C-14091 vendorName PromoCell term HMVEC-dAd tag HMVECDAD type Cell Line description adult dermal microvascular endothelial cells. karyotype normal orderUrl http://www.lonza.com organism human protocol Stam:HMVECdAd_Stam_protocol.pdf sex F termId BTO:0001854 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO:0001854 tier 3 tissue blood vessel vendorId CC-2543,CC-3202 vendorName Lonza term HMVEC-LLy tag HMVECb type Cell Line description lymphatic microvascular endothelial cells, lung-derived 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vendorId CC-2812, CC-2812T25 vendorName Lonza term HMVEC-dNeo tag HMVECg type Cell Line description neonatal microvascular endothelial cells (single donor), dermal-derived karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:HMVEC-dNeo_Stam_protocol.pdf sex M termId BTO:0004574 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004574 tier 3 tissue blood vessel vendorId CC-2505, CC-2505T225 vendorName Lonza term HMVEC-LBl tag HMVECh type Cell Line description blood microvascular endothelial cells, lung-derived karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:HMVEC-Lbl_Stam_protocol.pdf sex F termId BTO:0003599 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003599 tier 3 tissue blood vessel vendorId CC-2815, CC-2815T75 vendorName Lonza term HNPCEpiC tag HNPCE type Cell Line description non-pigment ciliary epithelial cells karyotype normal orderUrl http://www.sciencellonline.com/hnpcepic.html organism human protocol Stam:HNPCEpiC_Stam_protocol.pdf sex U termId BTO:0001770 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001770 tier 3 tissue epithelium vendorId 6580 vendorName ScienCell term HOB tag HOB type Cell Line description Undifferentiated Osteoblasts from two individuals, HOB_0090202.1 and HOB_0091301 from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/osteoblasts/?sword_list%5B%5D=HOB organism human protocol Gingeras:HOB0090202.1_Gingeras_protocol.pdf Gingeras:HOB0091301_Gingeras_protocol.pdf sex M termId BTO:0004324 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004324 tier 3 tissue cancellous bone vendorId HOB vendorName PromoCell term HOB_0090202.1 tag HOB00902021 type Cell Line childOf HOB description Undifferentiated Osteoblasts from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/osteoblasts/?sword_list%5B%5D=HOB organism human protocol Gingeras:HOB0090202.1_Gingeras_protocol.pdf sex M termId BTO:0004324 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004324 tier 3 tissue cancellous bone vendorId C-14071 vendorName PromoCell term HOB_0091301 tag HOB0091301 type Cell Line childOf HOB description Undifferentiated Osteoblasts from femoral head karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/osteoblasts/?sword_list%5B%5D=HOB organism human protocol Gingeras:HOB0091301_Gingeras_protocol.pdf sex F termId BTO:0004324 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004324 tier 3 tissue cancellous bone vendorId C-14071 vendorName PromoCell term HPAEC tag HPAEC type Cell Line description pulmonary artery endothelial cells. karyotype normal lineage mesoderm orderUrl http://www.lonza.com organism human protocol Stam:HPAEC_Stam_protocol.pdf sex F termId BTO:0001141 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001141 tier 3 tissue blood vessel vendorId CC-2530,CC-3162 vendorName Lonza term HPAEpiC tag HPAE type Cell Line description pulmonary alveolar epithelial cells karyotype normal orderUrl http://www.sciencellonline.com/hpaepic.html organism human protocol Stam:HPAEpiC_Stam_protocol.pdf sex U termId BTO:0003511 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003511 tier 3 tissue epithelium vendorId 3200 vendorName ScienCell term HPAF tag HPAF type Cell Line description pulmonary artery fibroblasts karyotype normal lineage mesoderm orderUrl http://www.sciencellonline.com/hpaaf.html organism human protocol Stam:HPAF_Stam_protocol.pdf sex U termId BTO:0000778 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000778 tier 3 tissue blood vessel vendorId 3120 vendorName ScienCell term HPC-PL tag HPCPL type Cell Line description Undifferentiated Pericytes from HPC-PL_0032601.13 and HPC-PL_0101504.13 karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-stem-and-blood-cells/pericytes/ organism human protocol Gingeras:HPCPL0032601.13_Gingeras_protocol.pdf Gingeras:HPCPL0101504.13_Gingeras_protocol.pdf sex B termId BTO:0001975 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001975 tier 3 tissue placenta vendorId pericytes vendorName PromoCell term HPC-PL_0032601.13 tag HPCPL003260113 type Cell Line childOf HPC-PL description Undifferentiated Pericytes karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-stem-and-blood-cells/pericytes/ organism human protocol Gingeras:HPCPL0032601.13_Gingeras_protocol.pdf sex M termId BTO:0001975 termUrl 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tissue placenta vendorId C-14069 vendorName PromoCell term HPIEpC_9041503.2 tag HPIEPC90415032 type Cell Line childOf HPIEpC description Placental Epithelial Cells amniotic membrane karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-primary-cells/epithelial-cells/human-placental-epithelial-cells-hplepc/ organism human protocol Gingeras:HPIEpC9041503.2_Gingeras_protocol.pdf sex M termId BTO:0001975 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001975 tier 3 tissue placenta vendorId C-14069 vendorName PromoCell term HRCEpiC tag HRCE type Cell Line description renal cortical epithelial cells karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:HRCEpiC_Stam_protocol.pdf sex U termId BTO:0000059 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000059 tier 3 tissue epithelium vendorId CC-2554 vendorName Lonza term HRE tag HRE 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Stam:HRPEpiC_Stam_protocol.pdf sex U termId BTO:0001177 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001177 tier 3 tissue epithelium vendorId 6540 vendorName ScienCell term bone_marrow_HS27a tag HS27A type Cell Line label Bone Marrow HS27a description HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31. karyotype normal lab Stam orderUrl http://cceh.fhcrc.org/ organism human protocol Stam:HS27a_SOP-1.V.pdf sex M termId BTO:0000141 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000141 tier 3 tissue bone marrow vendorId HS27a vendorName Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center term bone_marrow_HS5 tag HS5 type Cell Line label Bone Marrow HS27a description HS5 Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes 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PromoCell term HSMM tag HSMM type Cell Line description skeletal muscle myoblasts karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Bernstein:HSMM_Bernstein_protocol.pdf Crawford:HSMM_HSMMtube_Crawford_protocol.pdf Stam:HSMM_Stam_protocol.pdf sex U termId BTO:0000256 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000256 tier 3 tissue muscle vendorId CC-2580 vendorName Refer to the protocol documents for differing sources term HSMM_emb tag HSMMEMB type Cell Line description embryonic myoblast lab Crawford orderUrl http://depts.washington.edu/biowww/faculty/hauschka-steve/ organism human protocol Crawford:HSMMemb_Crawford_protocol.pdf sex U termId BTO:0000222 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000222 tier 3 tissue muscle vendorId fetal myoblast cell strain (H246 and H275) from Dr Stephen Hauschka- U. of Washington 1980 vendorName Duke/UNC/UT/EBI ENCODE group term HSMM_FSHD tag HSMMFSHD type Cell Line description primary myoblast from Facioscapulohumeral Muscular Dystrophy (FSHD) patients, muscle needle biopsies lab Crawford orderUrl http://www.genome.duke.edu/crawford-lab/crawford-lab organism human protocol Crawford:HSMM_HSMMtube_Crawford_protocol.pdf sex U termId BTO:0000222 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000222 tier 3 tissue muscle vendorId HSMM_FSHD vendorName Duke/UNC/UT/EBI ENCODE group term HSMMtube tag HSMMt type Cell Line childOf HSMM description skeletal muscle myotubes differentiated from the HSMM cell line karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Bernstein:HSMMtube_Bernstein_protocol.pdf Crawford:HSMM_HSMMtube_Crawford_protocol.pdf sex U termId BTO:0001760 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001760 tier 3 tissue muscle vendorId See HSMM vendorName Lonza term HSMMtube_emb tag HSMMTUBEEMB type Cell Line childOf HSMM_emb description embryonic myotube lab Crawford orderUrl http://depts.washington.edu/biowww/faculty/hauschka-steve/ organism human protocol Crawford:HSMMtubeemb_Crawford_protocol.pdf sex U termId BTO:0001760 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001760 tier 3 tissue muscle vendorId fetal myoblast cell strain (H246 and H275) from Dr Stephen Hauschka- U. of Washington 1980 vendorName Duke/UNC/UT/EBI ENCODE group term HSMMtube_FSHD tag HSMMTUBEFSHD type Cell Line childOf HSMM_FSHD description myotube from Facioscapulohumeral Muscular Dystrophy (FSHD) patient, muscle needle biopsies lab Crawford orderUrl http://www.genome.duke.edu/crawford-lab/crawford-lab organism human protocol Crawford:HSMM_HSMMtube_Crawford_protocol.pdf sex U termId BTO:0001760 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001760 tier 3 tissue muscle vendorId HSMMtube_FSHD vendorName Duke/UNC/UT/EBI ENCODE group term HT-1080 tag HT1080 type Cell Line description epithelial cell line derived from a fibrosarcoma, (PMID: 4132053), pseudo-diploid male with a modal chromosome number of 46, numerous chromosome abnormalities karyotype cancer lab Tenenbaum lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-121&Template=cellBiology organism human protocol missing sex M termId BTO:0001282 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001282 tier 3 tissue epithelium vendorId CCL-121 vendorName ATCC term HTR8svn tag HTR8 type Cell Line description trophoblast (HTR-8/SVneo) cell line, a thin layer of ectoderm that forms the wall of many mammalian blastulas and functions in the nutrition and implantation of the embryo karyotype normal lineage ectoderm orderUrl http://anatomy.queensu.ca/faculty/graham.cfm organism human protocol Crawford:HTR8svn_Crawford_protocol.pdf sex F termId BTO:0001079 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001079 tier 3 tissue blastula vendorId HTR8svn vendorName Charles H. 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Jhaveri at Duke University term HVMF tag HVMF type Cell Line description villous mesenchymal fibroblast cells karyotype normal orderUrl http://www.sciencellonline.com/hvmf.html organism human protocol Stam:HVMF_Stam_protocol.pdf Gingeras:HVMF6100401.3_Gingeras_protocol.pdf Gingeras:HVMF6091203.3_Gingeras_protocol.pdf sex U termId BTO:0002625 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002625 tier 3 tissue connective vendorId 7130 vendorName ScienCell term HVMF_6100401.3 tag HVMF61004013 type Cell Line childOf HVMF description Villous Mesenchymal Fibroblasts from villous tissue karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-primary-cells/ organism human protocol Gingeras:HVMF6100401.3_Gingeras_protocol.pdf sex F termId BTO:0001975 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001975 tier 3 tissue placenta vendorId C-14034 vendorName PromoCell term HVMF_6091203.3 tag HVMF60912033 type Cell Line childOf HVMF description Villous Mesenchymal Fibroblasts from villous tissue karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/products/human-primary-cells/ organism human protocol Gingeras:HVMF6091203.3_Gingeras_protocol.pdf sex M termId BTO:0001975 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001975 tier 3 tissue placenta vendorId C-14034 vendorName PromoCell term HWP tag HWP type Cell Line description Undifferentiated White Preadipocytes from two individuals, HWP_0092205 and HWP_8120201.5, subcutaneous adipose tissue from abdomen / upper arm karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/preadipocytes/?sword_list%5B%5D=HWP organism human protocol Gingeras:HWP0092205_Gingeras_protocol.pdf sex B termId BTO:0004042 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004042 tier 3 tissue adipose vendorId HWP vendorName PromoCell term HWP_0092205 tag HWP0092205 type Cell Line childOf HWP description Undifferentiated White Preadipocytes from abdomen karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/preadipocytes/?sword_list%5B%5D=HWP organism human protocol Gingeras:HWP0092205_Gingeras_protocol.pdf Gingeras:HWP8120201.5_Gingeras_protocol.pdf sex M termId BTO:0004042 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004042 tier 3 tissue subcutaneous adipose tissue vendorId C-14072 vendorName PromoCell term HWP_8120201.5 tag HWP81202015 type Cell Line childOf HWP description Undifferentiated White Preadipocytes from upper arm karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/preadipocytes/?sword_list%5B%5D=HWP organism human protocol Gingeras:HWP8120201.5_Gingeras_protocol.pdf sex F termId BTO:0004042 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004042 tier 3 tissue subcutaneous adipose tissue vendorId C-14072 vendorName PromoCell term IMR90 tag IMR90 type Cell Line description fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage endoderm lots 58607680 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-186&Template=cellBiology organism human protocol Stam:IMR90_Stam_protocol.pdf sex F termId BTO:0001229 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001229&termName=IMR-90%20cell tier 2 tissue lung vendorId CCL-186 vendorName ATCC term iPS tag IPS type Cell Line description induced pluripotent stem cell derived from skin fibroblast lineage induced pluripotent stem cell derived from skin fibroblast orderUrl http://intra.ninds.nih.gov/ organism human protocol Crawford:iPS_Crawford_protocol.pdf sex B termId BTO:0000001 (nonspecific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent stem cell vendorId iPS vendorName Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS term iPS_hFib2_iPS4 tag IPSHFIB2IPS4 type Cell Line description induced pluripotent stem cell line 4 derived from skin fibroblast of a 30 year old donor, same donor as iPS_hFib2_iPS5 karyotype normal lab Gilbert lineage missing orderUrl http://www.hsci.harvard.edu/ipscore/node/3 organism human protocol Gilbert:IPSHFIB2IPS4_Gilbert_protocol.pdf sex M termId BTO:0000001 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent cell (iPS) vendorId hFib2_iPS4 vendorName HSCI iPS Cell Core Facility term iPS_hFib2_iPS5 tag IPSHFIB2IPS5 type Cell Line description induced pluripotent stem cell line 5 derived from skin fibroblast of a 30 year old donor, same donor as iPS_hFib2_iPS4 karyotype normal lab Gilbert lineage missing orderUrl http://www.hsci.harvard.edu/ipscore/node/3 organism human protocol Gilbert:IPSHFIB2IPS5_Gilbert_protocol.pdf sex M termId BTO:0000001 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent cell (iPS) vendorId hFib2_iPS5 vendorName HSCI iPS Cell Core Facility term iPS_CWRU1 tag IPSCWRU1 type Cell Line description iPS cells derived from MSC658 fibroblast lab Crawford orderUrl http://genetics.case.edu/page.php?page_id=5&LN=Tesar&FN=Paul organism human protocol Crawford:iPS_Crawford_protocol.pdf sex M termId BTO:0000001 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent cell (iPS) vendorId iPS_CWRU1 vendorName Paul Tesar at Case Western University term iPS_NIHi7 tag IPSNIHI7 type Cell Line description iPS cells derived from AG08395 fibroblast lab Crawford orderUrl http://www.ninds.nih.gov/research/labs/25.htm organism human protocol Crawford:iPS_Crawford_protocol.pdf sex F termId BTO:0000001 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent cell (iPS) vendorId iPS_NIHi7 vendorName Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS term iPS_NIHi11 tag IPSNIHI11 type Cell Line description iPS cells derived from AG20443 fibroblast lab Crawford orderUrl http://www.ninds.nih.gov/research/labs/25.htm organism human protocol Crawford:iPS_Crawford_protocol.pdf sex M termId BTO:0000001 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000001 tier 3 tissue induced pluripotent cell (iPS) vendorId iPS_NIHi11 vendorName Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS term Ishikawa tag ISHIKAWA type Cell Line description endometrial adenocarcinoma lab Crawford orderUrl http://www.sigmaaldrich.com/catalog/ProductDetail.do?D7=0&N5=SEARCH_CONCAT_PNO%7CBRAND_KEY&N4=99040201%7CSIGMA&N25=0&QS=ON&F=SPEC organism human protocol Crawford:Ishikawa_Crawford_protocol.pdf sex F termId BTO:0000658 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000658 tier 3 tissue uterus vendorId 99040201 vendorName Sigma-Aldrich term Jurkat tag JURKAT type Cell Line description T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013) karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=TIB-152&Template=cellBiology organism human protocol Myers:Jurkat_protocol.pdf Stam:Jurkat_Stam_protocol.pdf sex M termId BTO:0001948 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001948 tier 3 tissue blood vendorId TIB-152 vendorName ATCC term Kidney_OC tag KIDNEYOC type Cell Line label Kidney OC description Primary frozen kidney tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B3 FAIRE) and NCTC donor ID 10-0022A (Rep B1 FAIRE) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:KidneyOC_Crawford_protocol.pdf sex B termId BTO:0000671 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000671 tier 3 tissue kidney vendorId 1104; 602; 1442; 10-0022A; 1863 vendorName NICHD ; NICHD ; NICHD ; NCTC ; NICHD term LHSR tag LHSR type Cell Line description prostate epithelial cells (PrEC), multiple human donors, all of whom are HIV-1, Hepatitis B and Hepatitis C negative, treatment: to create LHSR, cells were infected with amphotropic retroviruses encoding the SV40 large T antigen (L), the telomerase catalytic subunit hTERT (H), the SV40 small T antigen (S) and an oncogenic allele of H-ras (R). karyotype normal lineage endoderm orderUrl http://physicians.dana-farber.org/directory/profile.asp?dbase=main&setsize=10&display=Y&nxtfmt=pc&pgt=William+C.+Hahn,+MD,+PhD&gs=r&picture_id=0000378&lookup=Y&pict_id=0000378 organism human protocol Crawford:LHSR_Crawford_protocol.pdf sex U termId BTO:0002398 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002398 tier 3 tissue epithelium vendorId LHSR vendorName William Hahn at the Dana Farber Cancer Institute, Boston, MA term Liver_OC tag LIVEROC type Cell Line description Primary frozen liver tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:LiverOC_Crawford_protocol.pdf sex M termId BTO:0000759 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000759 tier 3 tissue liver vendorId 1104; 602; 1442 vendorName NICHD term Liver_STL011 tag LIVSTL011 type Cell Line description Primary liver tissue of a standard liver procurement from a 36 year old caucasian male. karyotype normal lab Snyder orderUrl http://snyderlab.stanford.edu/ organism human sex M termId BTO:0000759 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000759 tier 3 tissue liver vendorId STL011 vendorName Snyder lab term Liver_STL004 tag LIVSTL004 type Cell Line description Primary liver tissue from the right portion of a standard liver procurement from a 6 year old female. karyotype normal lab Snyder orderUrl http://snyderlab.stanford.edu/ organism human sex F termId BTO:0000759 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000759 tier 3 tissue liver vendorId STL004 vendorName Snyder lab term LNCaP tag LNCAP type Cell Line color 0,119,158 description prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.) karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1740&Template=cellBiology organism human protocol Crawford:LNCaP_Crawford_protocol.pdf Farnham:LNCaP_protocol.pdf Stam:LNCaP_Stam_protocol.pdf sex M termId BTO:0002021 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002021 tier 3 tissue prostate vendorId CRL-1740 vendorName ATCC term Loucy tag LOUCY type Cell Line description T cell leukemia karyotype cancer lineage mesoderm orderUrl http://www.dsmz.de/index.htm organism human protocol Bernstein:Loucy_Bernstein_protocol.pdf sex F termId BTO:0002104 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002104 tier 3 tissue blood vendorId Loucy vendorName DSMZ term Lung_OC tag LUNGOC type Cell Line description Primary frozen lung tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase) and CF Center donor IDs DD006I (Rep B1 FAIRE) and DD007I (Rep B2 FAIRE) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:LungOC_Crawford_protocol.pdf sex B termId BTO:0000763 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763 tier 3 tissue Lung vendorId 1104; 602; 1442; DD006I; DD007I vendorName NICHD ; NICHD ; NICHD ; CF Center ; CF Center term Lymphoblastoid_cell_line tag LYMPHOBLAST type Cell Line description parental cell type to lymphoblastoid cell lines karyotype normal lineage mesoderm orderUrl http://ccr.coriell.org organism human protocol Stam:Stam_15_protocols.pdf sex B termId BTO:0002062 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002062 tier 3 tissue blood vendorId various GMXXXXX cell lines vendorName Coriell term M059J tag M059J type Cell Line description malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old karyotype cancer lab Stam lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2366&Template=cellBiology organism human protocol Stam:M059J_Stam_protocol.pdf sex M termId BTO:0000527 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000527 tier 3 tissue brain vendorId CRL-2366 vendorName ATCC term MCF-7 tag MCF7 type Cell Line description mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis karyotype cancer lineage ectoderm lots 59401285 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-22&Template=cellBiology organism human protocol Crawford:MCF-7_Crawford_protocol.pdf Farnham:MCF-7_Farnham_protocol.pdf Stam:Stam_15_protocols.pdf sex F termId BTO:0000093 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000093 tier 2 tissue breast vendorId HTB-22 vendorName ATCC term MCF10A-Er-Src tag MCF10AES type Cell Line description mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER) lineage ectoderm orderUrl https://struhl.med.harvard.edu/ organism human protocol Struhl:MCF-10A_Struhl_protocol.pdf sex F termId BTO:0001939 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001939 tier 3 tissue breast vendorId MCF10A-Er-Src vendorName Struhl laboratory term MDA-MB-231 tag MDA type Cell Line description breast adenocarcinoma, epithelial cell line, derived from metastatic site: pleural effusion. (PMID: 730202) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-26&Template=cellBiology organism human protocol Struhl:MDA-MB-231_Struhl_protocol.pdf sex F termId BTO:0000815 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000815 tier 3 tissue breast vendorId HTB-26 vendorName ATCC term Medullo tag MEDULLO type Cell Line description medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997) karyotype cancer lineage ectoderm orderUrl http://www.cancer.duke.edu/btc/modules/facultystaff1/index.php?id=85 organism human protocol Crawford:D721_Crawford_protocol.pdf sex U termId BTO:0001359 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001359 tier 3 tissue brain vendorName Dr. Darrell Bigner at Duke University Medical Center term Medullo_D341 tag MEDULLOD341 type Cell Line description Medulloblastoma cell line of neuron or neuron precurosr origin karyotype cancer lab Crawford orderUrl http://www.cancer.duke.edu/btc/modules/facultystaff1/index.php?id=85 organism human protocol Crawford:MedulloD341_Crawford_protocol.pdf sex U termId BTO:0001757 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001757&termName=medulloblastoma%20cell tier 3 tissue brain vendorId Medullo_D341 vendorName Dr. Darrell Bigner at Duke University Medical Center term Melano tag MELANO type Cell Line description epidermal melanocytes karyotype normal lineage ectoderm orderUrl http://www.sciencellonline.com/human-epidermal-melanocytes-light.html organism human protocol Crawford:Melano_Crawford_protocol.pdf sex U termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId 2200 vendorName ScienCell term Mel_2183 tag MEL2183 type Cell Line description Melanoma Cell line karyotype cancer lab Crawford orderUrl http://www.genome.gov/19519015 organism human protocol Crawford:Mel2183_Crawford_protocol.pdf sex U termId BTO:0000849 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000849&termName=melanoma%20cell%20line tier 3 tissue Melanoma cell line derived from melanoma metastasis vendorId Mel_2183 vendorName Dr. Yardena Samuels term Monocytes-CD14+ tag MONOCD14 type Cell Line label Monocytes CD14+ description Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://labs.fhcrc.org/heimfeld/contact.html organism human protocol Stam:MonoCD14_Stam_protocol.pdf sex F termId BTO:0000876 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000876 tier 2 tissue monocytes vendorId Monocytes-CD14+ vendorName S. Heimfeld Laboratory, FHCRC term Monocytes-CD14+_RO01746 tag MONOCD14RO1746 type Cell Line label Monocytes CD14+ RO01746 childOf Monocytes-CD14+ description Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://labs.fhcrc.org/heimfeld/contact.html organism human protocol Stam:MonoCD14_Stam_protocol.pdf sex F termId BTO:0000876 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000876 tier 2 tissue monocytes vendorId Monocytes-CD14+_RO01746 vendorName S. Heimfeld Laboratory, FHCRC term Monocytes-CD14+_RO01826 tag MONOCD14RO1826 type Cell Line label Monocytes CD14+ RO01826 childOf Monocytes-CD14+ description Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, Monocytes-CD14+_RO01826 is a second draw being used as a replicate for Monocytes-CD14+_RO01746, newly promoted to tier 2: not in 2011 analysis karyotype normal lineage mesoderm orderUrl http://labs.fhcrc.org/heimfeld/contact.html organism human protocol Stam:MonoCD14_Stam_protocol.pdf sex F termId BTO:0000876 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000876 tier 2 tissue monocytes vendorId Monocytes-CD14+_RO01826 vendorName S. Heimfeld Laboratory, FHCRC term MRT_G401 tag MRTG401 type Cell Line label MRT G401 description Malignant renal rhabdoid tumor line karyotype cancer lab Crawford lineage missing lots 6 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1441&Template=cellBiology organism human protocol Crawford:MRTG401.6_Crawford_protocol.pdf sex M termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001802 tier 3 tissue kidney vendorId CRL-1441 vendorName ATCC term MRT_A204 tag MRTA204 type Cell Line label MRT A204 description Malignant rhabdoid tumor (MRT) line, rhabdomyosarcoma karyotype cancer lab Crawford lineage missing lots 1 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-82&Template=cellBiology organism human protocol Crawford:MRTA204.1_Crawford_protocol.pdf sex F termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001802 tier 3 tissue muscle vendorId HTB-82 vendorName ATCC term MRT_TTC549 tag MRTTTC549 type Cell Line label MRT TTC549 description Malignant Hepatic Rhabdoid tumor line karyotype cancer lab Crawford lineage missing orderUrl https://genome.ucsc.edu/ENCODE/protocols/cell/human/MRTTTC549_Crawford_protocol.pdf organism human protocol Crawford:MRTTTC549_Crawford_protocol.pdf sex M termId BTO:0002062 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001802 tier 3 tissue liver vendorId TTC549 vendorName ATCC term Myometr tag MYOMETR type Cell Line description myometrial cells karyotype normal orderUrl http://www.mwrif.org/188/condon-jeyasuria-lab organism human protocol Crawford:Myometr_Crawford_protocol.pdf sex F termId BTO:0000907 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000907 tier 3 tissue myometrium vendorName Dr. Jennifer Condon of Magee Women's Research Institute term Naive_B_cell tag NAIVEBCELL type Cell Line description Naive B cells (IgD+) isolated from de-identified tonsillectomy karyotype normal lab Crawford orderUrl http://melnicklaboratory.med.cornell.edu/people/yanwenjiang.php organism human protocol Crawford:NaiveBcell_Crawford_protocol.pdf sex U termId BTO:0000776 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000776 tier 3 tissue tonsil vendorId Naive_B_cell vendorName Dr. Yanwen Jiang term NB4 tag NB4 type Cell Line description acute promyelocytic leukemia cell line. (PMID: 1995093) karyotype cancer lineage mesoderm orderUrl http://www.dsmz.de/ organism human protocol ENCODE:NB4_protocol.pdf Stam:NB4_Stam_protocol.pdf sex U termId BTO:0002489 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002489 tier 3 tissue blood vendorId NB4 vendorName Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/ term NH-A tag NHA type Cell Line description astrocytes (also called Astrocy) karyotype normal lineage ectoderm orderUrl http://www.lonza.com/ organism human protocol Bernstein:NH-A_Bernstein_protocol.pdf Stam: ENCODE:NH-A_Stam_protocol.pdf sex U termId BTO:0000099 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000099 tier 3 tissue brain vendorId CC-2565 vendorName Lonza term NHBE tag NHBE type Cell Line description bronchial epithelial cells karyotype normal lineage endoderm orderUrl http://www.lonza.com/ organism human protocol Crawford:NHBE_Crawford_protocol.pdf sex F termId BTO:0002022 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002022 tier 3 tissue epithelium vendorId CC-2541 vendorName Lonza term NHBE_RA tag NHBERA type Cell Line description bronchial epithelial cells with retinoic acid karyotype normal lab Stam orderUrl http://www.lonza.com organism human protocol UW_Stam:NHBERA_Stam_protocol.pdf sex F termId BTO:0001845 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001845 tier 3 tissue bronchial epithelium vendorId CC-2540, CC3170 vendorName Lonza term NHDF-Ad tag NHDFAD type Cell Line description adult dermal fibroblasts karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:NHDF-Ad_Stam_protocol.pdf Bernstein:NHDF-Ad_Bernstein_protocol.pdf sex F termId BTO:0004419 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004419 tier 3 tissue skin vendorId CC-2511, CC-2511T225 vendorName Lonza term NHDF-neo tag NHDFNEO type Cell Line description neonatal dermal fibroblasts karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:NHDF-neo_Stam_protocol.pdf sex U termId BTO:0004419 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0004419 tier 3 tissue skin vendorId CC-2509 vendorName Lonza term NHDF tag NHDF type Cell Line description Dermal Fibroblasts from temple / breast karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/fibroblasts/normal-human-dermal-fibroblasts-nhdf/?sword_list%5B%5D=NHDF organism human protocol Gingeras:NHDF0060801.3_Gingeras_protocol.pdf Gingeras:NHDF7071701.2_Gingeras_protocol.pdf sex F termId BTO:0003185 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003185 tier 3 tissue skin vendorId NHDF vendorName PromoCell term NHDF_0060801.3 tag NHDF00608013 type Cell Line childOf NHDF description Dermal Fibroblasts from temple karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/fibroblasts/normal-human-dermal-fibroblasts-nhdf/?sword_list%5B%5D=NHDF organism human protocol Gingeras:NHDF0060801.3_Gingeras_protocol.pdf sex F termId BTO:0003185 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003185 tier 3 tissue skin vendorId C-14031 vendorName PromoCell term NHDF_7071701.2 tag NHDF70717012 type Cell Line childOf NHDF description Dermal Fibroblasts from breast karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/fibroblasts/normal-human-dermal-fibroblasts-nhdf/?sword_list%5B%5D=NHDF organism human protocol Gingeras:NHDF7071701.2_Gingeras_protocol.pdf sex F termId BTO:0003185 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003185 tier 3 tissue skin vendorId C-14031 vendorName PromoCell term NHEK tag NHEK type Cell Line category Tissue color 179,0,134 description epidermal keratinocytes karyotype normal lineage ectoderm orderUrl http://www.lonza.com organism human protocol ENCODE:Keratinocyte_protocol.pdf sex U termId BTO:0000375 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000375 tier 3 tissue skin vendorId CC-2501 vendorName Lonza term NHEM_M2 tag NHEMM2 type Cell Line label NHEM M2 description Epidermal Melanocytes (adult) from two individuals, NHEM_M2_7011001.2 and NHEM_M2_7012303 from cheek / temple karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEMM27011001.2_Gingeras_protocol.pdf Gingeras:NHEMM27012303_Gingeras_protocol.pdf sex B termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId NHEM vendorName PromoCell term NHEM_M2_7011001.2 tag NHEMM270110012 type Cell Line label NHEM M2 (7011001.2) childOf NHEM_M2 description Epidermal Melanocytes (adult) from cheek karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEMM27011001.2_Gingeras_protocol.pdf sex M termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId C-14043 vendorName PromoCell term NHEM_M2_7012303 tag NHEMM27012303 type Cell Line label NHEM M2 (7012303) childOf NHEM_M2 description Epidermal Melanocytes (adult) from temple karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEMM27012303_Gingeras_protocol.pdf sex F termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId C-14043 vendorName PromoCell term NHEM.f_M2 tag NHEMFM2 type Cell Line label NHEM.f M2 description Epidermal Melanocytes from two individuals, NHEM.f_M2_5071302.2 and NHEM.f_M2_6022001 from foreskin karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEM.fM25071302.2_Gingeras_protocol.pdf Gingeras:NHEM.fM26022001_Gingeras_protocol.pdf sex M termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId NHEM vendorName PromoCell term NHEM.f_M2_5071302.2 tag NHEMFM250713022 type Cell Line label NHEM.f M2 (5071302.2) childOf NHEM.f_M2 description Epidermal Melanocytes (foreskin) karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEM.fM25071302.2_Gingeras_protocol.pdf sex M termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId C-14042 vendorName PromoCell term NHEM.f_M2_6022001 tag NHEMFM26022001 type Cell Line label NHEM.f M2 (6022001) childOf NHEM.f_M2 description Epidermal Melanocytes (foreskin) karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/melanocytes/?sword_list%5B%5D=NHEM organism human protocol Gingeras:NHEM.fM26022001_Gingeras_protocol.pdf sex M termId BTO:0000847 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000847 tier 3 tissue skin vendorId C-14042 vendorName PromoCell term NHLF tag NHLF type Cell Line description lung fibroblasts karyotype normal lineage endoderm orderUrl http://www.lonza.com/ organism human protocol Bernstein:NHLF_Bernstein_protocol.pdf Stam:NHLF_Stam_protocol.pdf sex U termId BTO:0000161 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000161 tier 3 tissue lung vendorId CC-2512 vendorName Lonza term NT2-D1 tag NT2D1 type Cell Line description malignant pluripotent embryonal carcinoma (NTera-2), "The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line." - ATCC. (PMID: 6694356) karyotype cancer lineage inner cell mass orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1973&Template=cellBiology organism human protocol ENCODE:NT2-D1_protocol.pdf sex M termId BTO:0000946 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000946 tier 3 tissue testis vendorId CRL-1973 vendorName ATCC term Olf_neurosphere tag OLFNEUROSPHERE type Cell Line label Olfactory neurosphere description Human olfactory neurosphere-derived cells from mucosal biopsies karyotype normal lab Crawford orderUrl http://www.griffith.edu.au/professional-page/professor-alan-mackay-sim organism human protocol Crawford:Olfneurosphere_Crawford_protocol.pdf sex U termId termId BTO:0000961 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000961 tier 3 tissue Nasal biopsy vendorId Olf_neurosphere vendorName Alan Mackay-Sim term Osteobl tag OSTEO type Cell Line label Osteoblasts description osteoblasts (NHOst) karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Crawford:Osteoblast_Crawford_protocol.pdf Bernstein:Osteoblast_Bernstein_protocol.pdf sex U termId BTO:0001593 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001593 tier 3 tissue bone vendorId CC-2538 vendorName Lonza term ovcar-3 tag OVCAR3 type Cell Line description ovarian adenocarcinoma, "the NIH: OVCAR-3 line was established in 1982 by T.C. Hamilton, et al. from the malignant ascites of a patient with progressive adenocarcinoma of the ovary." - ATCC. (PMID: 6604576) karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-161&Template=cellBiology organism human protocol Stam:Stam_15_protocols.pdf sex F termId BTO:0000812 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000812 tier 3 tissue ovary vendorId HTB-161 vendorName ATCC term PANC-1 tag PANC1 type Cell Line description pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays. karyotype cancer lineage endoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1469&Template=cellBiology organism human protocol Myers:PANC-1_Myers_protocol.pdf Stam:PANC-1_Stam_protocol.pdf sex M termId BTO:0000304 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000304 tier 3 tissue pancreas vendorId CRL-1469 vendorName ATCC term Pancreas_OC tag PANCREASOC type Cell Line label Pancreas OC description Primary frozen pancreas tissue from NCTC donor IDs 09-0144A (Rep B1) and 10-0021A (Rep B2) karyotype normal lab Crawford orderUrl http://www.ecu.edu/cs-dhs/med/NcTissueConsortium.cfm organism human protocol Crawford:PancreasOC_Crawford_protocol.pdf sex M termId BTO:0000988 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000988 tier 3 tissue pancreas vendorId 09-0144A; 10-0021A vendorName NCTC term PanIsletD tag PANISD type Cell Line description dedifferentiated human pancreatic islets from the National Disease Research Interchange (NDRI), same source as PanIslets lineage endoderm orderUrl http://www.ndriresource.org/NDRI_Initiatives/Pancreatic_Islets/31/ organism human protocol Crawford:PanIsletD_Crawford_protocol.pdf sex B termId BTO:0000991 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000991 tier 3 tissue pancreas vendorId PanIsletD vendorName National Disease Research Interchange term PanIslets tag PANISLETS type Cell Line description pancreatic islets from 2 donors, the sources of these primary cells are cadavers from National Disease Research Interchange (NDRI) and another sample isolated as in Bucher, P. et al., Assessment of a novel two-component enzyme preparation for human islet isolation and transplantation. Transplantation 79, 917 (2005) karyotype normal lineage endoderm orderUrl http://www.ndriresource.org/NDRI_Initiatives/Pancreatic_Islets/31/ organism human protocol Crawford:PanIslets_Crawford_protocol.pdf Lieb:PanIslets_Lieb_protocol.pdf sex M termId BTO:0000991 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000991 tier 3 tissue pancreas vendorId PanIslets vendorName Refer to publication or NDRI term PBDE tag PBDE type Cell Line description peripheral blood-derived erythroblasts lineage mesoderm orderUrl http://pibbs.usc.edu/faculty/profile/?fid=205 organism human protocol Farnham:PBDE_Farnham_protocol.pdf sex M termId BTO:0000574 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000574 tier 3 tissue blood vendorId PBDE vendorName Dr. Peggy Farnham at USC term PBDEFetal tag PBDEFETAL type Cell Line description peripheral blood-derived erythroblasts from 16-19 week human fetal liver karyotype normal lineage mesoderm orderUrl http://www.einstein.yu.edu/cellbiology/Lab/Bouhassira/default.htm organism human protocol Farnham:FetalPBDE_Farnham_protocol.pdf sex U termId BTO:0000553 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO:0000553 tier 3 tissue liver vendorId FetalPBDE vendorName Bouhassira Lab term PBMC tag PBMC type Cell Line description peripheral blood mononuclear cells lineage mesoderm orderUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR3G organism human protocol Farnham:PBMC_Farnham_protocol.pdf sex M termId BTO:0001025 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001025 tier 3 tissue blood vendorId PBMC vendorName Dr. E.H. Bresnick at UW Madison term PFSK-1 tag PFSK1 type Cell Line description neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2060&Template=cellBiology organism human protocol Myers:PFSK-1_protocol.pdf sex M termId BTO:0000690 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000690 tier 3 tissue brain vendorId CRL-2060 vendorName ATCC term pHTE tag PHTE type Cell Line description primary tracheal epithelial cells lineage endoderm orderUrl https://www.case.edu/cgi-bin/directory/pb_lookup.cgi?search_text=calvin+cotton&submit.x=0&submit.y=0&submit=Search&search_method=regular&page_num=1 organism human protocol Crawford:pHTE_Crawford_protocol.pdf sex U termId BTO:0001120 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001120 tier 3 tissue epithelium vendorName Dr. Cal Cotton at Case Western Reserve University term Pons_OC tag PONSOC type Cell Line description Primary frozen pons mid-brain tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:PonsOC_Crawford_protocol.pdf sex M termId BTO:0001101 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001101 tier 3 tissue pons mid-brain vendorId 1104; 602; 1442 vendorName NICHD term PrEC tag PREC type Cell Line description prostate epithelial cell line karyotype normal lineage epithelial orderUrl http://www.lonza.com/ organism human protocol Stam:PrEC_Stam_protocol.pdf sex U termId BTO:0002398 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002398 tier 3 tissue prostate vendorId CC-2555 vendorName Lonza term ProgFib tag PROGFIB type Cell Line description fibroblasts, Hutchinson-Gilford progeria syndrome (cell line HGPS, HGADFN167, progeria research foundation) orderUrl http://www.progeriaresearch.org/ organism human protocol Crawford:progeria_Crawford_protocol.pdf sex M termId BTO:0001255 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001255 tier 3 tissue skin vendorId HGADFN167 vendorName Progeria Research Foundation term prostate tag PROSTATE type Cell Line label Prostate description prostate tissue purchased for CSHL project lineage endoderm orderUrl http://www.atcc.org/ organism human protocol Gingeras:Prostate_Gingeras_protocol.pdf sex M termId BTO:0001129 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001129 tier 3 tissue prostate vendorId Missing vendorName ATCC term Prostate_OC tag PROSTATEOC type Cell Line description Primary frozen prostate tissue from NICHD donor IDs 1669 (Rep B1) and 1540 (Rep B2) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:ProstateOC_Crawford_protocol.pdf sex M termId BTO:0001129 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001129 tier 3 tissue prostate vendorId 1669; 1540 vendorName NICHD term Psoas_muscle_OC tag PSOASMUSCLEOC type Cell Line description Primary frozen psoas muscle tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1540 (Rep B1), 1863 (Rep B2 FAIRE) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:PsoasmuscleOC_Crawford_protocol.pdf sex B termId BTO:0001140 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001140 tier 3 tissue psoas muscle vendorId 1104; 602; 1442; 1540; 1863 vendorName NICHD term Raji tag RAJI type Cell Line description B lymphocyte, "The Raji line of lymphoblast-like cells was established by R.J.V. Pulvertaft in 1963 from a Burkitt's lymphoma of the left maxilla of an 11-year-old Black male." - ATCC. (PMID: 14086209) karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-86&Template=cellBiology organism human protocol Farnham:Raji_Farnham_protocol.pdf sex M termId BTO:0001154 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001154&termName=RAJI%20cell tier 3 tissue blood vendorId CCl-86 vendorName ATCC term RCC_7860 tag RCC7860 type Cell Line label RCC 7860 description renal cell adenocarcinmoma karyotype cancer lab Crawford orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1932&Template=cellBiology organism human protocol Crawford:RCC7860_Crawford_protocol.pdf sex M termId BTO:0000037 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000037&termName=renal%20adenocarcinoma%20cell tier 3 tissue kidney vendorId CRL-1932 vendorName ATCC term RPMI-7951 tag RPMI7951 type Cell Line description Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high. karyotype cancer lab Stam lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-66&Template=cellBiology organism human protocol Stam:RPMI7951_Stam_protocol.pdf sex F termId BTO:0003508 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0003508 tier 3 tissue skin vendorId HTB-66 vendorName ATCC term RPTEC tag RPTEC type Cell Line description renal proximal tubule epithelial cells karyotype normal orderUrl http://www.lonza.com/ organism human protocol Stam:RPTEC_Stam_protocol.pdf sex U termId BTO:0001498 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001498 tier 3 tissue epithelium vendorId CC-2553, CC-2553T225 vendorName Lonza term RWPE1 tag RWPE1 type Cell Line description prostate epithelial karyotype normal orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-11609&Template=cellBiology organism human protocol Crawford:RWPE_Crawford_protocol.pdf sex M termId BTO:0002397 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002397 tier 3 tissue prostate vendorId CRL-11609 vendorName ATCC term SAEC tag SAEC type Cell Line description small airway epithelial cells karyotype normal lineage endoderm orderUrl http://www.lonza.com/ organism human protocol Stam:SAEC_Stam_protocol.pdf sex U termId BTO:0002022 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002022 tier 3 tissue epithelium vendorId CC-2547 vendorName Lonza term SH-SY5Y tag SHSY5Y type Cell Line childOf SK-N-SH description neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-2266&Template=cellBiology organism human protocol Farnham:SH-SY5Y_Farnham_protocol.pdf sex F termId BTO:0000793 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0000793 tier 3 tissue brain vendorId CC-2266 vendorName ATCC term SK-N-MC tag SKNMC type Cell Line description neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-10&Template=cellBiology organism human protocol Myers:SK-N-MC_protocol.pdf Stam:SK-N-MC_Stam_protocol.pdf sex F termId BTO:0002372 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002372 tier 3 tissue brain vendorId HTB-10 vendorName ATCC term SK-N-SH tag SKNSH type Cell Line description neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual. karyotype cancer lineage ectoderm lots 59257297 orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-11&Template=cellBiology organism human protocol Myers:SK-N-SH_Myers_protocol.pdf sex F termId BTO:0001620 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001620&termName=SK-N-SH%20cell tier 2 tissue brain vendorId HTB-11 vendorName ATCC term SK-N-SH_RA tag SKNSHRA type Cell Line label SK-N-SH (Retinoic Acid) childOf SK-N-SH description neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-11&Template=cellBiology organism human protocol Stam:Stam_15_protocols.pdf sex F termId BTO:0002372 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002372 tier 3 tissue brain vendorId HTB-11 vendorName ATCC term SKMC tag SKMC type Cell Line label SkMC description skeletal muscle cells karyotype normal lineage mesoderm orderUrl http://www.lonza.com/ organism human protocol Stam:SkMC_Stam_protocol.pdf sex U termId BTO:0001801 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001801 tier 3 tissue muscle vendorId CC-2561 vendorName Lonza term SkMC tag SKMC type Cell Line label SkMC description Skeletal muscle myosatellite cells from two individuals, SkMC_9011302 SkMC_8121902.17 from M. pectoralis / Mm. intercostales karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/skeletal-muscle-cells/?sword_list%5B%5D=SkMC organism human protocol Gingeras:SkMC9011302_Gingeras_protocol.pdf Gingeras:SkMC8121902.17_Gingeras_protocol.pdf sex B termId BTO:0002916 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002916 tier 3 tissue muscle vendorId SkMC vendorName PromoCell term SkMC_9011302 tag SKMC9011302 type Cell Line childOf SkMC description Skeletal muscle myosatellite cells from M. pectoralis karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/skeletal-muscle-cells/?sword_list%5B%5D=SkMC organism human protocol Gingeras:SkMC9011302_Gingeras_protocol.pdf sex F termId BTO:0002916 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002916 tier 3 tissue striated muscle vendorId C-14060 vendorName PromoCell term SkMC_8121902.17 tag SKMC812190217 type Cell Line childOf SkMC description Skeletal muscle myosatellite cells from Mm. intercostales karyotype normal lab Gingeras lineage missing orderUrl http://www.promocell.com/nc/products/human-primary-cells/skeletal-muscle-cells/?sword_list%5B%5D=SkMC organism human protocol Gingeras:SkMC8121902.17_Gingeras_protocol.pdf sex M termId BTO:0002916 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002916 tier 3 tissue striated muscle vendorId C-14060 vendorName PromoCell term Small_intestine_OC tag SMALLINTESTINEOC type Cell Line label Small intestine OC description Primary frozen small intestine tissue from NCTC donor IDs 10-0063A (Rep B1) and 09-0143A (Rep B2) karyotype normal lab Crawford orderUrl http://www.ecu.edu/cs-dhs/med/NcTissueConsortium.cfm organism human protocol Crawford:SmallintestineOC_Crawford_protocol.pdf sex M termId BTO:0000651 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000651 tier 3 tissue small intestine vendorId 10-0063A; 09-0143A vendorName NCTC term Spleen_OC tag SPLEENOC type Cell Line description Primary frozen spleen tissue from NICHD donor IDs 1863 (Rep B1) and 4548 (Rep B2) karyotype normal lab Crawford orderUrl http://medschool.umaryland.edu/btbank/tissue_requests.asp organism human protocol Crawford:SpleenOC_Crawford_protocol.pdf sex F termId BTO:0001281 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001281 tier 3 tissue spleen vendorId 1863; 4548 vendorName NICHD term Stellate tag STELLATE type Cell Line description hepatic stellate cells, liver that was perfused with collagenase and sellected for hepatic stellate cells by density gradient karyotype normal lineage endoderm orderUrl http://www.dukehealth.org/physicians/steve_s_choi organism human protocol Crawford:Stellate_Crawford_protocol.pdf sex F termId BTO:0002316 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002316 tier 3 tissue liver vendorId Stellate vendorName Dr. Steve Choi at Duke University term T_cells_CD4+ tag TCELLSCD4 type Cell Line label T cells CD4+ description Parent cell line for T cells CD4+. karyotype unknown lab Crawford lineage mesoderm orderUrl http://138.26.61.118/depts/MEB/SOMResearchFaculty/currentfacultydata.asp?ID=DRDRDR organism human protocol Crawford_Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex B termId BTO:0000782 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000782&termName=T-lymphocyte tier 3 tissue blood vendorId vary vendorName Dr. David Randolph at University of Alabama, Birmingham term T98G tag T98G type Cell Line description fibroblast cell line derived from a glioblastoma multiforme. (PMID: 222778) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1690&Template=cellBiology organism human sex M termId BTO:0001583 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001583 tier 3 tissue brain vendorId CRL-1690 vendorName ATCC protocol missing term TBEC tag TBEC type Cell Line description trachea and bronchial epithelial cells from frush lung tissue provided by National Disease Research Interchange, passage 2 primary, non-immortalized cells, donor was 21 years old lineage endoderm orderUrl http://www.ndriresource.org/ organism human protocol Crawford:TBEC_Crawford_protocol.pdf sex M termId BTO:0001389 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001389 tier 3 tissue epithelium vendorId DD009C vendorName National Disease Research Interchange term Th1 tag TH1 type Cell Line description primary Th1 T cells lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex U termId BTO:0001678 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001678 tier 3 tissue blood vendorId None (primary pheresis of single normal subject) vendorName Dr. John Stamatoyannopoulos at UW term Th1_Wb33676984 tag TH1WB33676984 type Cell Line description Th1 cells in vivo isolation karyotype normal donor is Asian, female 26 year old, primary pheresis of single normal subject lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex F termId BTO:0001678 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0001678 tier 3 tissue blood vendorId Wb33676984 vendorName Dr. John Stamatoyannopoulos at UW term Th1_Wb54553204 tag TH1WB54553204 type Cell Line description Th1 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex M termId BTO:0001678 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0001678 tier 3 tissue blood vendorId Wb54553204 vendorName Dr. John Stamatoyannopoulos at UW term Th17 tag TH17 type Cell Line description T helper cells expressing IL-17, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex B termId BTO:0002417 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0002417 tier 3 tissue blood vendorId Th17 vendorName Dr. John Stamatoyannopoulos at UW term Th2 tag TH2 type Cell Line description primary Th2 T cells lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex U termId BTO:0001679 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001679 tier 3 tissue blood vendorId None (primary pheresis of single normal subject) vendorName Dr. John Stamatoyannopoulos at UW term Th2_Wb33676984 tag TH2WB33676984 type Cell Line description Th2 cells in vivo isolation, donor is Asian, female 26 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex F termId BTO:0001679 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0001679 tier 3 tissue blood vendorId Wb33676984 vendorName Dr. John Stamatoyannopoulos at UW term Th2_Wb54553204 tag TH2WB54553204 type Cell Line description Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex M termId BTO:0001679 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0001679 tier 3 tissue blood vendorId Wb54553204 vendorName Dr. John Stamatoyannopoulos at UW term T-47D tag T47D type Cell Line description epithelial cell line derived from a mammary ductal carcinoma. karyotype cancer orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-133&Template=cellBiology organism human protocol Stam_and_Myers:T47D_StamandMyers_protocol.pdf sex F termId BTO:0001248 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001248 tier 3 tissue breast vendorId HTB-133 vendorName ATCC term Treg_Wb78495824 tag TREGWB78495824 type Cell Line description T regulatory cells in vivo isolation karyotype normal donor is Causasian, female 35 year old, primary pheresis of single normal subject lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex F termId BTO:0004520 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0004520 tier 3 tissue blood vendorId Wb78495824 vendorName Dr. John Stamatoyannopoulos at UW term Treg_Wb83319432 tag TREGWB83319432 type Cell Line description T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject karyotype normal lab Stam lineage mesoderm orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism human protocol Stam:AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf sex M termId BTO:0004520 termUrl http://www.ebi.ac.uk/ontology-lookup/?termId=BTO%3A0004520 tier 3 tissue blood vendorId Wb83319432 vendorName Dr. John Stamatoyannopoulos at UW term Urothelia tag UROTHEL type Cell Line description primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene karyotype normal orderUrl http://pathology.med.und.nodak.edu/dept_home/MaryAnn.cfm organism human protocol Crawford:Urothelia_Crawford_protocol.pdf sex F termId BTO:0001245 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A001245 tier 3 tissue urothelium vendorId Urothelia vendorName Dr. D Sens at University of N. Dakota term U87 tag U87 type Cell Line description glioblastoma, astrocytoma, (PMID: 4332744) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-14&Template=cellBiology organism human protocol Myers:U-87_Myers_protocol.pdf sex M termId BTO:0002036 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0002036 tier 3 tissue brain vendorId HTB-14 vendorName ATCC term U2OS tag U2OS type Cell Line description osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590) karyotype cancer lineage mesoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-96&Template=cellBiology organism human protocol Farnham:U2OS_Farnham_protocol.pdf sex F termId BTO:0000970 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000970 tier 3 tissue bone vendorId HTB-96 vendorName ATCC term UCH-1 tag UCH1 type Cell Line description chordoma cell line karyotype cancer lab Crawford lineage ectoderm orderUrl http://www.chordomafoundation.org/research/ organism human protocol Crawford:UCH1_Crawford_protocol.pdf sex M termId BTO:0001768 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001768&termName=notochord tier 3 tissue chordoma vendorId Foundation vendorName Chordoma Research term WERI-Rb-1 tag WERIRB1 type Cell Line description retinoblastoma (PMID: 844036) karyotype cancer lineage ectoderm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=HTB-169&Template=cellBiology organism human protocol Stam:WERI-Rb-1_Stam_protocol.pdf sex F termId BTO:0001178 (non-specific) termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001178 tier 3 tissue eye vendorId HTB-169 vendorName ATCC term WI-38 tag WI38 type Cell Line description embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct karyotype normal lineage endoderm orderUrl http://www-dsv.cea.fr/dsv/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-stress-oxydants-et-cancer-lsoc/equipe-mecanismes-de-stabilite-genomique-c.-mann organism human protocol Stam:WI38_Stam_protocol.pdf sex F termId BTO:0001958 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0001958 tier 3 tissue embryonic lung vendorId WI-38 vendorName Dr. Carl Mann, SBIGeM ### Mouse Cell Lines # Human cell types, template below # -------------------------- # term human-readable cell type name. required # tag machine-readable cell type name, no special characters. required. # Uppercase except for a possible lowercase suffix to distinguish # closely-related cell types # type informs pipeline code of stanza type. Should always be Cell Line. Required # organism used in many ways. Should correspond to a "type organism" stanza. required # description human-readable description of cell type, for cell type cellTypes.html. required # tissue general tissue type, for categorizing cell types. optional # age should correspond to a "type age". optional # strain should correspond to a "type strain". optional # vendorName name of vendor or lab that provides these cells. required # vendorId the ID of the cell type in the vendor's catalog. optional # orderUrl URL for ordering the cell type. Links with vendorId on cellTypes.html. required # karyotype human-readable karyotype, for .html page. optional # lineage human-readable source of cell lines, e.g. 18 year old male. optional # termId ID for best ontology term. Shown in cellTypes.html. optional # termUrl URL for term in the ontology. Links with termId on cellTypes.html. optiona # color specifies color code for track data of this cell type, rgb values. optional # sex used in documentation and validation. CV controlled. required # protocol comma-separated list of format: tag_submittingLab_protocol.pdf. optional # category T for tissue, L for cell line, or P for primary cells. optional # tier is NOT used in mouse term 10T1/2 tag 10T12 type Cell Line age immortalized category cellLine color 65,105,225 description Multipotential cell line that can be converted by 5-azacytidine into three mesodermal stem cell lineages. orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CCL-226&Template=cellBiology organism mouse protocol Wold:10ToneHalf_Wold_protocol.pdf sex U strain C3H termId 96 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=96 tissue embryonic vendorId CCL-226 vendorName ATCC term 3134 tag 3134 type Cell Line age immortalized category cellLine color 0,158,115 description Mammary orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:3134_Stam_protocol.pdf sex M strain RIII termId 7035 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7035 tissue mammary vendorId 3134 vendorName Dr. John Stamatoyannopoulos at UW term 416B tag 416B type Cell Line age immortalized category cellLine color 86,180,233 description myeloid progenitor cells, CD34+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:416B_Stam_protocol.pdf sex M strain B6D2F1/J termId 7043 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7043 tissue blood vendorId 416B vendorName Dr. John Stamatoyannopoulos at UW term A20 tag A20 type Cell Line age immortalized category cellLine color 86,180,233 description B cell lymphoma line derived from a spontaneous reticulum cell neoplasm orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=TIB-208&Template=cellBiology organism mouse protocol Stam:A20_Stam_protocol.pdf sex M strain BALB/cAnN termId 7069 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7069 tissue blood vendorId TIB-208 vendorName ATCC term Adrenal tag ADRENAL type Cell Line age ageUnknown category Tissue color 189,0,157 description Adrenal gland orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:Adrenal_Gingeras_protocol.pdf sex U strain Unknown termId 7097 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7097 tissue adrenal gland vendorId Adrenal vendorName CSHL lab term BAT tag BAT type Cell Line label Brown Adipose Tissue age ageUnknown category Tissue color 189,0,157 description Brown adipocytes tissue orderUrl http://endocrinology.ucsd.edu/Faculty/olefsky.html organism mouse protocol Ren:BAT_Ren_protocol.pdf sex U strain Unknown termId 7188 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7118 tissue adipose vendorName Dr. Jerrold M. Olefsky Lab at UCSD term B-cell_(CD19+) tag BCELLCD19P type Cell Line label B-cell (CD19+) age adult-8wks category primaryCells color 86,180,233 description B Cell , CD19+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:bCellCd19_Stam_protocol.pdf sex M strain C57BL/6 termId 7069 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7069 tissue blood vendorId B-cell_(CD19+) vendorName Dr. John Stamatoyannopoulos at UW term B-cell_(CD43-) tag BCELLCD43N type Cell Line label B-cell (CD43-) age adult-8wks category primaryCells color 86,180,233 description mouse spleen B cells, CD43-,CD11b- orderUrl http://www.seattlechildrens.org/medical-staff/michael-a-bender/ organism mouse protocol Stam:bCellCd43_Stam_protocol.pdf sex M strain C57BL/6 termId 7069 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7069 tissue blood vendorId B-cell_(CD43-) vendorName M. Bender (FHCRC) term Bladder tag BLADDER type Cell Line age ageUnknown category Tissue color 204,121,167 description Urinary Bladder orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:Bladder_Gingeras_protocol.pdf sex U strain Unknown termId 6961 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6961 tissue urinary bladder vendorId Bladder vendorName CSHL lab term BMDM tag BMDM type Cell Line label Bone Marrow Derived Macrophage age ageUnknown category primaryCells color 86,180,233 description Bone marrow derived macrophage orderUrl http://www.mimg.ucla.edu/faculty/cheng/genhong.html organism mouse protocol Ren:BMDM_Ren_protocol.pdf sex U strain Unknown termId 7058 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7058 tissue blood vendorId BMDM vendorName Dr. Genhong Cheng Lab at UCLA term BoneMarrow tag BMARROW type Cell Line label Bone Marrow age ageUnknown category Tissue color 86,180,233 description Bone Marrow orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:BoneMarrow_Ren_protocol.pdf sex U strain Unknown termId 6943 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6943 tissue bone vendorId BoneMarrow vendorName LICR lab term C2C12 tag C2C12 type Cell Line age immortalized category cellLine color 139,69,19 description Myoblast cell line derived from thigh muscle of C3H mice after crush injury orderUrl http://woldlab.caltech.edu/ organism mouse protocol Wold:C2C12_Wold_protocol.pdf sex F strain C3H termId 7125 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7125 tissue skeletal muscle vendorId C2C12 vendorName Dr. Barbara Wold at Caltech term Cerebellum tag CBELLUM type Cell Line age ageUnknown category Tissue color 105,105,105 description Cerebellum orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Cerebellum_Ren_protocol.pdf Stam:Tissue_Stam_protocol.pdf Gingeras:Cerebellum_Gingeras_protocol.pdf sex U strain Unknown termId 7012 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7012 tissue cerebellum vendorId Cerebellum; Cerebellum vendorName 1)LICR lab; 2)CSHL lab term Cerebrum tag CEREBRUM type Cell Line age ageUnknown category Tissue color 105,105,105 description Cerebrum orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:Tissue_Stam_protocol.pdf sex U strain Unknown termId 7014 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7014 tissue cerebrum vendorId Cerebrum vendorName Dr. John Stamatoyannopoulos at UW term CH12 tag CH12 type Cell Line age immortalized category cellLine color 86,180,233 description B-cell lymphoma (GM12878 analog) orderUrl http://bbs.yale.edu/people/sherman_weissman.profile organism mouse protocol Weissman:CH12_Weissman_protocol.pdf sex F strain B10.H-2aH-4bp/Wts termId 7069 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7069 tissue blood vendorId CH12 vendorName Weissman lab term Colon tag COLON type Cell Line age ageUnknown category Tissue color 230,159,0 description Colon orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Colon_Ren_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 6984 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6984 tissue colon vendorId Colon; Colon vendorName 1)LICR lab; 2)CSHL lab term CNS tag CNS type Cell Line age ageUnknown category Tissue color 105,105,105 description Central Nervous System orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:CNS_Gingeras_protocol.pdf sex U strain Unknown termId 7003 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7003 tissue central nervous system vendorId CNS vendorName CSHL lab term Cortex tag CORTEX type Cell Line age ageUnknown category Tissue color 105,105,105 description Cortex orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Cortex_Ren_protocol.pdf Gingeras:Cortex_Gingeras_protocol.pdf sex U strain Unknown termId 4465 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=4465 tissue cortex vendorId Cortex;Cortex vendorName 1)LICR lab; 2)CSHL lab term Duodenum tag DUOD type Cell Line age ageUnknown category Tissue color 230,159,0 description Duodenum orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:Duodenum_Gingeras_protocol.pdf sex U strain Unknown termId 6977 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6977 tissue duodenum vendorId Duodenum vendorName CSHL lab term EPC_(CD117+_CD71-_TER119-) tag EPCPMM type Cell Line label EPC (CD117+ CD71- TER119-) age ageUnknown category primaryCell color 153,38,0 description liver fraction CD117+,CD71-,TER119- orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol UW:EPC_Stam_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId CD117+,CD71-,TER119- vendorName M. Bender, R. Byron (Fred Hutchinson Cancer Research Center) term EPC_(CD117+_CD71+_TER119-) tag EPCPPM type Cell Line label EPC (CD117+ CD71+ TER119-) age ageUnknown category primaryCell color 153,38,0 description liver fraction CD117+,CD71+,TER119- orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol UW:EPC_Stam_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId CD117+,CD71+,TER119- vendorName M. Bender, R. Byron (Fred Hutchinson Cancer Research Center) term EPC_(CD117-_CD71+_TER119+) tag EPCMPP type Cell Line label EPC (CD117- CD71+ TER119+) age ageUnknown category primaryCell color 153,38,0 description liver fraction CD117-,CD71+,TER119+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol UW:EPC_Stam_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId CD117-,CD71+,TER119+ vendorName M. Bender, R. Byron (Fred Hutchinson Cancer Research Center) term EPC_(CD117-_CD71-_TER119+) tag EPCMMP type Cell Line label EPC (CD117- CD71- TER119+) age ageUnknown category primaryCell color 153,38,0 description liver fraction CD117-,CD71-,TER119+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol UW:EPC_Stam_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId CD117-,CD71-,TER119+ vendorName M. Bender, R. Byron (Fred Hutchinson Cancer Research Center) term EPC_(CD117+_CD71+_TER119+) tag EPCPPP type Cell Line label EPC (CD117+ CD71+ TER119+) age ageUnknown category primaryCell color 153,38,0 description liver fraction CD117+,CD71+,TER119+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol UW:EPC_Stam_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId CD117+,CD71+,TER119+ vendorName M. Bender, R. Byron (Fred Hutchinson Cancer Research Center) term EpiSC-5 tag EPISC5 type Cell Line age E0 category primaryCells color 65,105,225 description epidermal stem cell orderUrl http://gilbertlab.bio.fsu.edu/ organism mouse protocol Gilbert:EpiSC-5_Gilbert_protocol.pdf sex M strain 129 termId 233 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=233 vendorId EpiSC5 vendorName Gilbert lab term EpiSC-7 tag EPISC7 type Cell Line age E0 category primaryCells color 65,105,225 description epidermal stem cell orderUrl http://gilbertlab.bio.fsu.edu/ organism mouse protocol Gilbert:EpiSC-7_Gilbert_protocol.pdf sex M strain 129 termId 50 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=50 vendorId EpiSC7 vendorName Gilbert lab term ES-46C tag ES46C type Cell Line age E0 category primaryCells color 65,105,225 description ES-cells isolated from 129. orderUrl http://www.bioc.cam.ac.uk/uto/smitha.html organism mouse protocol missing sex M strain 129 termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId ES-46C vendorName Smith lab term ES-Bruce4 tag ESB4 type Cell Line age E0 category primaryCells color 65,105,225 description mouse embryonic stem cells orderUrl http://cancer.ucsd.edu/research-training/shared-resources/transgenic-core/Pages/default.aspx organism mouse protocol Ren:ES-Bruce4_Ren_protocol.pdf sex M strain C57BL/6 termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId ES-Bruce4 vendorName University of California, San Diego Transgenic Core and Embryonic Stem Cell term ES-CJ7 tag ESCJ7 type Cell Line age E0 category primaryCells color 65,105,225 description ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993 ("Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20". Swiatek PJ, Gridley T. Genes Dev. 1993 Nov,7(11):2071-84.) orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:ES-CJ7_Stam_protocol.pdf sex U strain 129S1/SV1mj termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId ES-CJ7 vendorName Dr. John Stamatoyannopoulos at UW term ES-D3 tag ESD3 type Cell Line age E0 category primaryCells color 65,105,225 description ES-cells isolated from 129S2/SvPas orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=crl-1934&Template=cellBiology organism mouse protocol missing sex M strain 129S2/SvPas termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId CRL-1934 vendorName ATCC term ES-E14 tag ESE14 type Cell Line age E0 category primaryCells color 65,105,225 description mouse embryonic stem cell line E14 orderUrl http://santoslab.ucsf.edu/lab_site/Home.html organism mouse protocol Stam:ES-E14_Stam_protocol.pdf sex M strain 129/Ola termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId E14 vendorName Santos lab term ES-EM5Sox17huCD25 tag ESEM5S type Cell Line age E0 category primaryCells color 65,105,225 description ES cell line that bears the gfp and human IL2R alpha (also known as CD25) marker genes in the goosecoid (Gsc) and Sox17 loci, derived from EB5 orderUrl http://gilbertlab.bio.fsu.edu/ organism mouse protocol Gilbert:ES-EM5Sox17huCD25_Gilbert_protocol.pdf sex U strain 129/Ola vendorId ES-GscgfpSox17huCD25 vendorName Gilbert lab term ES-neurons tag ESNEURON type Cell Line label ES-neurons age E3.5 category primaryCells color 105,105,105 description neurons derived from mouse embryonic stem cells by treatment of retinoic acid orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:ES-neurons_Ren_protocol.pdf sex M strain 129S4/SvJae termId 15148 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=15148 tissue nerve vendorId mESC-neurons vendorName LICR lab term ES-TT2 tag ESTT2 type Cell Line age E0 category primaryCells color 65,105,225 description ES-cells isolated from C57BL/6xCBA orderUrl http://www.riken.go.jp/engn/r-world/research/lab/asi/cml/index.html organism mouse protocol missing sex M strain B6CBAF1/J termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId ES-TT2 vendorName Shinkai lab term ES-WW6 tag ESWW6 type Cell Line age E0 category primaryCells color 65,105,225 description ES-cells isolated from mix of ~20% C57/B6J, ~75% 129/Sv and ~5% SJL strains orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:ES-WW6_Stam_protocol.pdf sex M strain Unknown termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId WW6_F4WT vendorName A. Skoultchi Lab term ES-WW6_F1KO tag ESWW6KO type Cell Line age E0 category primaryCells color 65,105,225 description Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells. orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:ES-WW6_F1K0_Stam_protocol.pdf sex M strain Unknown termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId WW6_F1KO vendorName A. Skoultchi Lab term Erythrobl tag ERYTHROBL type Cell Line label Erythroblast age ageUnknown category primaryCells color 153,38,0 description Erythroblast, ter119+ cells from liver orderUrl http://www.med.upenn.edu/apps/faculty/index.php/g20000320/p14904 organism mouse protocol Hardison:Erythroblast__Hardison_protocol.pdf sex U strain Unknown termId 7079 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7079 tissue blood vendorId Erythroblast vendorName Mitch Weiss lab term FatPad tag FAT type Cell Line label Fat Pad age ageUnknown category Tissue color 189,0,157 description Adipose tissue orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:Tissue_Stam_protocol.pdf sex U strain Unknown termId 7108 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7108 tissue adipose vendorId FatPad vendorName Dr. John Stamatoyannopoulos at UW term Fibroblast tag FIBROBLAST type Cell Line age ageUnknown category Tissue description Fibroblast orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:Fibroblast_Stam_protocol.pdf sex U strain Unknown termId 6948 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6948 tissue lung vendorId Fibroblast vendorName Dr. John Stamatoyannopoulos at UW term ForelimbBud tag FLBUD type Cell Line label Fore Limb Bud age ageUnknown category Tissue color 102,50,200 description embryo forelimb buds orderUrl http://weill.cornell.edu/research/researcher/lselleri/ organism mouse protocol Stam:ForelimbBuds_Stam_protocol.pdf sex U strain Unknown termId 3883 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=3883 tissue limb vendorId ForelimbBud vendorName Selleri lab, Cornell term FrontalLobe tag FLOBE type Cell Line label Frontal Lobe age ageUnknown category Tissue color 105,105,105 description Frontal Lobe orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:FrontalLobe_Gingeras_protocol.pdf sex U strain Unknown termId 7003 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7003 tissue frontal lobe vendorId Frontal Lobe vendorName CSHL lab term FVLstem tag FVLS type Cell Line label FVL-stem age ageUnknown category primaryCells color 153,38,0 description Friend virus infected murine CD34+,CD133+,Kit+,Sca1+ Leukemia stem cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). orderUrl http://vbs.psu.edu/research/labs/paulson organism mouse protocol Hardison:FVLstem_Hardison_protocol.pdf sex U strain Unknown termId 15212 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=15212 tissue spleen vendorId FVLstem vendorName Paulson Lab term FVprogenitor tag FVP type Cell Line label FV-progenitor age ageUnknown category primaryCells color 153,38,0 description Friend virus infected murine CD34-,CD133-,Kit+,Sca1+ progenitor cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). orderUrl http://vbs.psu.edu/research/labs/paulson organism mouse protocol Hardison:FVprogenitor_Hardison_protocol.pdf sex U strain Unknown termId 15212 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=15212 tissue spleen vendorId FVprogenitor vendorName Paulson Lab term G1E tag G1E type Cell Line age E0 category cellLine color 153,38,0 description Gata1- erythroid progenitor orderUrl http://www.med.upenn.edu/apps/faculty/index.php/g20000320/p14904 organism mouse protocol Hardison:G1E_Hardison_protocol.pdf sex M strain 129 termId 7079 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7079 tissue blood vendorName Mitch Weiss lab term G1E-ER4 tag G1EER4 type Cell Line age E0 category cellLine color 153,38,0 description Gata1 restored erythroid cells, differentiation induced by estradiol (E2) orderUrl http://www.med.upenn.edu/apps/faculty/index.php/g20000320/p14904 organism mouse protocol Hardison:G1E_ER4_E2_Hardison_protocol.pdf sex M strain 129 termId 7079 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7079 tissue blood vendorName Mitch Weiss lab term GenitalFatPad tag GFAT type Cell Line label Genital Fat Pad age ageUnknown category Tissue color 189,0,157 description Genital Adipose tissue orderUrl http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Stam:GenitalFatPad_Stam_protocol.pdf Gingeras:GenitalFatPad_Gingeras_protocol.pdf sex U strain Unknown termId 16230 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=16230 tissue adipose vendorId Genital Fat Pad; Gonadal Adipose Tissue vendorName 1)Dr. John Stamatoyannopoulos at UW; 2)CSHL lab term Heart tag HEART type Cell Line age ageUnknown category Tissue color 153,38,0 description Heart orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Heart_Ren_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 7103 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7103 tissue heart vendorId Heart; Heart vendorName 1)LICR lab; 2)CSHL lab term Heart_STL003 tag HeartSTL003 type Cell Line description Standard procurement of heart tissue from a 34 year old caucasian male. karyotype normal lab Snyder orderUrl http://snyderlab.stanford.edu/ organism human sex M termId BTO:0000562 termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000562 tier 3 tissue heart vendorId STL003 vendorName Snyder lab term HeadlessEmbryo tag HLEMBRYO type Cell Line label Headless Embryo age ageUnknown category Tissue color 65,105,225 description Whole embryos with heads removed orderUrl http://weill.cornell.edu/research/researcher/lselleri/ organism mouse protocol Stam:HeadlessEmbryo_Stam_protocol.pdf sex U strain Unknown termId 3341 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=3341 tissue embryo vendorId HeadlessEmbryo vendorName Selleri lab, Cornell term HindlimbBud tag HLBUD type Cell Line label Hind Limb Bud age ageUnknown category Tissue color 102,50,200 description embryo hindlimb buds orderUrl http://weill.cornell.edu/research/researcher/lselleri/ organism mouse protocol Stam:HindlimbBuds_Stam_protocol.pdf sex U strain Unknown termId 3891 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=3891 tissue limb vendorId HindlimbBud vendorName Selleri lab, Cornell term J185a tag J185A type Cell Line age immortalized category cellLine color 139,69,19 description Fetal myoblast Desmin+ orderUrl http://gilbertlab.bio.fsu.edu/ organism mouse sex U strain Unknown termId 174 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=174 vendorId J185a vendorName Gilbert lab protocol missing term Kidney tag KIDNEY type Cell Line age ageUnknown category Tissue color 204,121,167 description Kidney orderUrl http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Stam:Tissue_Stam_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 6960 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6960 tissue kidney vendorId Kidney; Kidney vendorName 1)Dr. John Stamatoyannopoulos at UW; 2)CSHL lab term L1210 tag L1210 type Cell Line age immortalized category cellLine color 86,180,233 description lymphoblast from 8 month female orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=ccl-219&Template=cellBiology organism mouse protocol Gilbert:L1210_Gilbert_protocol.pdf sex F strain DBA/2 termId 7077 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7077 tissue blood vendorId CCL-219 vendorName ATCC term LgIntestine tag LGINT type Cell Line label Large Intestine age ageUnknown category Tissue color 230,159,0 description Large Intestine orderUrl http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Stam:LargeIntestine_Stam_protocol.pdf Gingeras:LargeIntestine_Gingeras_protocol.pdf sex U strain Unknown termId 6982 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6982 tissue large intestine vendorId Large Intestine; Large Intestine vendorName 1)Dr. John Stamatoyannopoulos at UW; 2)CSHL lab term Limb tag LIMB type Cell Line age ageUnknown category Tissue color 102,50,200 description Limb orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Limb_Ren_protocol.pdf Gingeras:Limb_Gingeras_protocol.pdf sex U strain Unknown termId 7127 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7127 tissue limb vendorId Limb; Limb vendorName 1)LICR lab; 2)CSHL lab term Liver tag LIVER type Cell Line age ageUnknown category Tissue color 230,159,0 description Liver orderUrl http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Liver_Ren_protocol.pdf Stam:Tissue_Stam_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 6963 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6963 tissue liver vendorId Liver; Liver vendorName 1)Dr. John Stamatoyannopoulos at UW; 2)CSHL lab term Lung tag LUNG type Cell Line age ageUnknown category Tissue description Lung orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Lung_Ren_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 6948 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6948 tissue lung vendorId Lung; Lung vendorName 1)LICR lab; 2)CSHL lab term MammaryGland tag MAMG type Cell Line label Mammary Gland age ageUnknown category Tissue color 0,158,115 description Mammary Gland orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:MammaryGland_Gingeras_protocol.pdf sex U strain Unknown termId 7035 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7035 tissue mammary vendorId Mammary Gland vendorName CSHL lab term MEP tag MEP type Cell Line age ageUnknown category primaryCells color 86,180,233 description mouse megakaryocyte erythroid progenitor cells with lineages CD16/32 and CD34- orderUrl http://www.genome.gov/10000336 organism mouse protocol Hardison:MEP_Hardison_protocol.pdf sex U strain Unknown termId 7040 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7040 tissue blood vendorId MEP vendorName Bodine lab term MEF tag MEF type Cell Line age ageUnknown category primaryCells color 65,105,225 description Mouse Embryonic Fibroblast orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:MEF_Ren_protocol.pdf sex U strain Unknown termId 6948 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6948 tissue embryonic fibroblast vendorId MEF vendorName LICR lab term Megakaryo tag MEGAKARYO type Cell Line label Megakaryocyte age ageUnknown category primaryCells color 86,180,233 description Megakaryocyte orderUrl http://www.med.upenn.edu/apps/faculty/index.php/g20000320/p14904 organism mouse protocol Hardison:Megakaryocyte_Hardison_protocol.pdf sex U strain Unknown termId 7054 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7054 tissue blood vendorName Mitch Weiss lab term MEL tag MEL type Cell Line age immortalized category cellLine color 86,180,233 description Leukemia (K562 analog) orderUrl http://bbs.yale.edu/people/sherman_weissman.profile organism mouse protocol Weissman:MEL_Weissman_protocol.pdf Stam:MEL_Stam_protocol.pdf sex M strain Unknown termId MP:0002026 termUrl https://www.informatics.jax.org//searches/Phat.cgi?id=MP:0002026 tissue blood vendorId MEL vendorName Weissman lab term Mesoderm tag MESODERM type Cell Line age ageUnknown category Tissue color 65,105,225 description axial somatic and lateral plate mesoderm from eviscerated headless, limbless embryos orderUrl http://weill.cornell.edu/research/researcher/lselleri/ organism mouse protocol Stam:Mesoderm_Stam_protocol.pdf sex U strain Unknown termId 3342 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=3342 tissue mesoderm vendorId Mesoderm vendorName Selleri lab, Cornell term mG/ER tag MGER type Cell Line age immortalized category cellLine color 86,180,233 description MEL-GATA-1-ER, This is a mouse suspension cell line derived from MEL cells by stable transfection with a GATA-1-ER fusion protein construct as described by Choe et al., 2003 (Cancer Res 63, 6363-6369, 2003). These cells can be terminally differentiated into mature erythroid cells with Β-estradiol treatment orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:mG-ER_Stam_protocol.pdf sex M strain Unknown termId GO:0030218 termUrl https://www.informatics.jax.org//searches/GO.cgi?id=GO:0030218 tissue blood vendorId mG/ER vendorName Dr. John Stamatoyannopoulos at UW term NIH-3T3 tag NIH3T3 type Cell Line age immortalized category cellLine color 86,180,233 description fibroblast orderUrl http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=CRL-1658&Template=cellBiology organism mouse protocol Stam:NIH-3T3_Stam_protocol.pdf sex M strain NIH/Swiss termId 7146 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7146 tissue blood vendorId CRL-1658 vendorName ATCC term OlfactBulb tag OLFACT type Cell Line label Olfactory Bulb age ageUnknown category Tissue color 105,105,105 description Olfactory Bulb orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:OlfactoryBulb_Ren_protocol.pdf sex U strain Unknown termId 7015 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7015 tissue olfactory bulb vendorId Olfactory Bulb vendorName LICR lab term Ovary tag OVARY type Cell Line age ageUnknown category Tissue color 0,158,115 description Ovary orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:Ovary_Gingeras_protocol.pdf sex U strain Unknown termId 6958 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6958 tissue ovary vendorId Ovary vendorName CSHL lab term Pancreas tag PANCREAS type Cell Line age ageUnknown category Tissue color 189,0,157 description Pancreas orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:Pancreas_Ren_protocol.pdf sex U strain Unknown termId 7015 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7015 tissue pancreas vendorId Pancreas vendorName LICR lab term Patski tag PATSKI type Cell Line age immortalized category cellLine color 204,121,167 description Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line. orderUrl http://depts.washington.edu/chdd/iddrc/res_aff/disteche.html organism mouse protocol Stam:Patski_Stam_protocol.pdf sex F strain C57BL/6J termId 6948 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6948 tissue kidney vendorId Patski vendorName Dr. Christine Disteche at University of Washington term Placenta tag PLAC type Cell Line age ageUnknown category Tissue color 153,38,0 description Placenta orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:Placenta_Ren_protocol.pdf sex U strain Unknown termId 6957 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6957 tissue placenta vendorId Placenta vendorName LICR lab term Retina tag RETINA type Cell Line age ageUnknown category Tissue color 105,105,105 description Retina orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:Retina_Stam_protocol.pdf sex U strain Unknown termId 6944 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6944 tissue brain vendorId Retina vendorName Dr. John Stamatoyannopoulos at UW term Skin tag SKIN type Cell Line age ageUnkown category Tissue color 204,121,167 description Skin orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:Tissue_Ren_protocol.pdf sex U strain Unknown termId 4556 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=4556 tissue skin vendorId Skin vendorName LICR lab term SkMuscle tag SKMUSCLE type Cell Line label Skeletal Muscle age ageUnknown category Tissue color 139,69,19 description Skeletal Muscle orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:SkeletalMuscle_Stam_protocol.pdf sex U strain Unknown termId 7125 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7125 tissue skeletal muscle vendorId Skeletal Muscle vendorName Dr. John Stamatoyannopoulos at UW term SmIntestine tag SMINT type Cell Line label Small Intestine age ageUnknown category Tissue color 230,159,0 description Small Intestine orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:SmallIntestine_Ren_protocol.pdf Gingeras:SmallIntestine_Gingeras_protocol.pdf sex U strain Unknown termId 6978 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6978 tissue small intestine vendorId Small Intestine; Small Intestine vendorName 1)LICR lab; 2)CSHL lab term SpinalCord tag SPC type Cell Line age ageUnknown category Tissue color 105,105,105 description Spinal Cord, part of the CNS orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:Tissue_Ren_protocol.pdf sex U strain Unknown termId 4521 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=4521 tissue spinal cord vendorId Spinal Cord vendorName LICR lab term Spleen tag SPL type Cell Line age ageUnknown category Tissue color 86,180,233 description Spleen orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Spleen_Ren_protocol.pdf Stam:Spleen_Stam_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 7038 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7038 tissue spleen vendorId Spleen; Spleen; Spleen vendorName 1) LICR lab; 2)Dr. John Stamatoyannopoulos at UW; 3)CSHL lab term Stomach tag STOM type Cell Line age ageUnknown category Tissue color 230,159,0 description Stomach orderUrl http://gingeraslab.cshl.edu/; http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Gingeras:Stomach_Gingeras_protocol.pdf Ren:Tissue_Ren_protocol.pdf sex U strain Unknown termId 6966 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=6966 tissue stomach vendorId Stomach; Stomach vendorName 1) CSHL lab; 2) LICR lab term SubcFatPad tag SFAT type Cell Line label Subcutaneous Fat Pad age ageUnknown category Tissue color 189,0,157 description Subcutaneous Adipose tissue orderUrl http://gingeraslab.cshl.edu/ organism mouse protocol Gingeras:SubcutaneousFatPad_Gingeras_protocol.pdf sex U strain Unknown termId 17477 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=17477 tissue adipose vendorId Subcutaneous Adipose tissue vendorName CSHL lab term Testis tag TESTIS type Cell Line age ageUnknown category Tissue color 0,158,115 description Testis orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Testis_Ren_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 9201 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=9201 tissue testis vendorId Testis; Testis vendorName 1)LICR lab; 2)CSHL lab term Thymus tag THYMUS type Cell Line age ageUnknown category Tissue color 86,180,233 description Thymus orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/; http://gingeraslab.cshl.edu/ organism mouse protocol Ren:Thymus_Ren_protocol.pdf Stam:Thymus_Stam_protocol.pdf Gingeras:Tissue_Gingeras_protocol.pdf sex U strain Unknown termId 7037 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7037 tissue thymus vendorId Thymus; Thymus vendorName 1)LICR lab; 2)CSHL lab term THelper-Activated tag THELPA type Cell Line age ageUnknown category primaryCells color 86,180,233 description Activated primary CD4 effector cells, isolated ex vivo orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:THelper-Activated_Stam_protocol.pdf sex U strain Unknown termId 7060 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7060 tissue blood vendorId THelper-Activated vendorName Dr. John Stamatoyannopoulos at UW term T-Naive tag TNAIVE type Cell Line age ageUnknown category primaryCells color 86,180,233 description Naive T cells: CD4+, CD25- orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:Tissue_Stam_protocol.pdf sex U strain Unknown termId 7060 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7060 tissue blood vendorId T-Naive vendorName Dr. John Stamatoyannopoulos at UW term TReg-Activated tag TREGA type Cell Line age ageUnknown category primaryCells color 86,180,233 description Activated primary T regulatory cells, isolated ex vivo orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:TReg-Activated_Stam_protocol.pdf sex U strain Unknown termId 7060 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7060 tissue blood vendorId TReg-Activated vendorName Dr. John Stamatoyannopoulos at UW term TReg tag TREG type Cell Line age ageUnknown category primaryCells color 86,180,233 description Regulatory T cells CD4+,CD25+ orderUrl http://www.gs.washington.edu/faculty/stamj.htm organism mouse protocol Stam:TReg_Stam_protocol.pdf sex U strain Unknown termId 7060 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7060 tissue blood vendorId TReg vendorName Dr. John Stamatoyannopoulos at UW term UpperLegMuscle tag ULMUS type Cell Line age ageUnknown category Tissue color 139,69,19 description Upper leg muscle orderUrl http://bioinformatics-renlab.ucsd.edu/rentrac/ organism mouse protocol Ren:Tissue_Ren_protocol.pdf sex U strain Unkown termId 11033 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=11033 tissue muscle vendorId Thigh Muscle vendorName LICR lab term WholeBrain tag WBRAIN type Cell Line label Whole Brain age ageUnknown category Tissue color 105,105,105 description Whole Brain orderUrl http://www.gs.washington.edu/faculty/stamj.htm; http://gingeraslab.cshl.edu/ organism mouse protocol Stam:Tissue_Stam_protocol.pdf Gingeras:WholeBrain_Gingeras_protocol.pdf sex U strain Unknown termId 7005 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=7005 tissue brain vendorId Whole Brain; Whole Brain vendorName 1)Dr. John Stamatoyannopoulos at UW; 2)CSHL lab term ZhBTc4 tag ZHBTC4 type Cell Line age E0 category primaryCells color 65,105,225 description Undifferentiated mouse embryonic stem cells orderUrl http://molcellbio.grad.uiowa.edu/faculty/dana-levasseur organism mouse protocol Stam:ZhBTc4_Stam_protocol.pdf sex M strain 129/Ola termId 29 termUrl https://www.informatics.jax.org//searches/anatdict.cgi?id=29 vendorId ZhBTc4 vendorName Dr. Levasseur at University of Iowa #### Antibodies # template below # -------------------------- # term human-readable name # tag machine-readable name, no special characters # type informs pipeline code of stanza type. Should always be Antibody # antibodyDescription human-readable description. Used in antibodies.html # targetDescription human-readable description of what the antibody targets. # Used in antibodies.html # targetId some external ID of the target. Used in antibodies.html # targetUrl GeneCard link # vendorName name of vendor or lab that provides these antibodies # vendorId the ID of the antibody in the vendor's catalog # orderUrl URL for ordering the antibody. Links with vendorId on antibodies.html # lab lab that first asked for this antibody. CV controlled. # validation either missing or the name of a validation document # lots optional lot numbers term AP-2alpha tag AP2ALPHA type Antibody label AP-2alpha (sc-8975) antibodyDescription Rabbit polyclonal - AP-2alpha (H-79) is a rabbit polyclonal antibody raised against amino acids 130-209 mapping within an internal region of AP-2alpha of human origin. Antibody Target: TFAP2A lab Farnham lots E0804 orderUrl http://www.scbt.com/datasheet-8975-ap-2alpha-h-79-antibody.html target TFAP2A targetClass TFSS targetDescription Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. AP-2 factors bind to the consensus sequence 5' -GCCNNNGGC-3' and activate genes involved in a large spectrum of important biological functions including proper eye, face, body wall, limb and neural tube development. They also suppress a number of genes including MCAM/MUC18, C/EBP alpha and MYC. AP-2alpha is the only AP-2 protein required for early morphogenesis of the lens vesicle (by similarity). targetId GeneCard:TFAP2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TFAP2A validation Human_-_AP-2alpha_(siRNA,ChIP-seq):human_AP-2alpha_validation_Farnham.pdf vendorId sc-8975 vendorName Santa Cruz Biotechnology term AP-2gamma tag AP2GAMMA type Antibody label AP-2gamma (sc-8977) antibodyDescription Rabbit polyclonal - AP-2Y (H-77) is a rabbit polyclonal antibody raised against amino acids 145-221 mapping with in an internal region of AP-2Y of human origin. Antibody Target: TFAP2C lab Farnham lots G1404 orderUrl http://www.scbt.com/datasheet-8977-ap-2gamma-h-77-antibody.html target TFAP2C targetClass TFSS targetDescription Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. AP-2 factors bind to the consensus sequence 5'-GCCNNNGGC-3' and activate genes involved in a large spectrum of important biological functions including proper eye, face, body wall, limb and neural tube development. They also suppress a number of genes including MCAM/MUC18, C/EBP alpha and MYC. targetId GeneCard:TFAP2C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TFAP2C validation Human_-_AP-2gamma_(siRNA,ChIP-seq):human_AP-2gamma_validation_Farnham.pdf vendorId sc-8977 vendorName Santa Cruz Biotechnology term ARID3A_(NB100-279) tag ARID3ANB100279 type Antibody label ARID3A (NB100-279) antibodyDescription Rabbit polyclonal affinity purified antibody. Immunogen: A synthetic peptide, which represented a portion of human Dead Ringer-Like 1 encoded within exon 8. Antibody Target: ARID3A lab Snyder lots A1 orderUrl http://www.novusbio.com/DRIL1-Antibody_NB100-279.html target ARID3A targetDescription This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq) targetId GeneCard:ARID3A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3A validation Human_-_ARID3A_(NB100-279)(Immunoprecipitation,ChIP-seq):human_ARID3A_NB100-279_validation_Snyder.pdf vendorId NB100-279 vendorName Novus Biologicals term ARID3A_(sc-8821) tag ARID3ASC8821 type Antibody label ARID3A (sc-8821) antibodyDescription Goat polyclonal affinity purified antibody raised against a peptide mapping at the N-terminus of ARID3A of human origin. Antibody Target: ARID3A lab Snyder lots B100 orderUrl http://www.scbt.com/datasheet-8821-arid3a-n-20-antibody.html target ARID3A targetDescription This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq) targetId GeneCard:ARID3A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3A validation Human_-_ARID3A_(sc-8821)(Immunoprecipitation,ChIP-seq):human_ARID3A_sc-8821_validation_Snyder.pdf vendorId sc-8821 vendorName Santa Cruz Biotechnology term ATF1_(06-325) tag ATF106325 type Antibody label ATF1 (06-325) antibodyDescription Sheep polyclonal protein A/G affinity purified, immunogen: CPVTLTSQTTKTDDPQL. Antibody Target: ATF1 lab Struhl orderUrl http://www.millipore.com/coa/tech1/74jm6a target ATF1 targetDescription ATF1 is a bZip transcription factor from the CREB family. ATF1 binds to both cAMP response elements (TGACGTCA). targetId GeneCard:ATF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ATF1 validation Human_-_ATF1_(06-325)(Western_blot,ChIP-seq):human_ATF1_06-325_validation_Struhl.pdf vendorId 06-325 vendorName Millipore term ATF2_(9221) tag ATF29221 type Antibody label ATF2 (9221) antibodyDescription Rabbit polyclonal, antibodies are produced by immunizing animals with a synthetic phosphopeptide corresponding to residues surrounding Thr71 of human ATF2. Antibodies are purified by protein A and peptide affinity chromatography. Antibody Target: ATF2 lab Struhl orderUrl http://www.cellsignal.com/products/9221.html target ATF2 targetDescription ATF2 is a stress inducible basic leucine zipper transcription factor from the CREB family. ATF2 is phosphorylated at threonine residues 69 and 71 by JNK or p38 mitogen activated protein kinases. Mutation of these residues leads to the loss of ATF2 transactivation in vitro. targetId GeneCard:ATF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ATF2 validation Human_-_ATF2_(9221)(Western_blot,Immunoprecipitation):human_ATF2_9221_validation_Struhl.pdf vendorId 9221 vendorName Cell Signaling Technology term ATF2_(sc-6233) tag ATF2SC6233 type Antibody label ATF2 (sc-6233) antibodyDescription Rabbit polyclonal protein A/G affinity purified, epitope corresponding to amino acids 1-96 mapping at the N-terminus of ATF-2 of human origin. Antibody Target: ATF2 lab Struhl orderUrl http://www.scbt.com/datasheet-6233-atf-2-n-96-antibody.html target ATF2 targetDescription ATF2 is a bZip transcription factor from the CREB family. ATF2 binds to both cAMP response elements (TGACGTCA) and TPA responsive element (TGAGTCA) and is known to heterodimerize with JUN members of the AP1 family of transcription factors. ATF2 is activated by phosphorylation of Thr71 by the stress activated p38 mitogen activated protein kinases. targetId GeneCard:ATF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ATF2 validation Human_-_ATF2_(sc-6233)(Western_blot,ChIP-seq):human_ATF2_sc-6233_validation_Struhl.pdf vendorId sc-6233 vendorName Santa Cruz Biotechnology term ATF2_(SC-81188) tag ATF2SC81188 type Antibody label ATF2 (sc-81188) antibodyDescription Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of ATF2 of human origin. Antibody Target: ATF2 lab Myers lots H0609 orderUrl http://datasheets.scbt.com/sc-81188.pdf target ATF2 targetDescription This gene encodes a transcription factor that is a member of the leucine zipper family of DNA binding proteins. This protein binds to the cAMP-responsive element (CRE), an octameric palindrome. The protein forms a homodimer or heterodimer with c-Jun and stimulates CRE-dependent transcription. The protein is also a histone acetyltransferase (HAT) that specifically acetylates histones H2B and H4 in vitro; thus it may represent a class of sequence-specific factors that activate transcription by direct effects on chromatin components. Additional transcript variants have been identified but their biological validity has not been determined. (provided by RefSeq) targetId GeneCard:ATF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ATF2 validation Human_-_ATF2_(sc-81188)(Western_blot,IP-MassSpec):human_ATF2_SC-81188_validation_Myers.pdf vendorId sc-81188 vendorName Santa Cruz Biotechnology term ATF3 tag ATF3 type Antibody label ATF3 (sc-188) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3 lab Myers lots J2209 E1406 orderUrl http://www.scbt.com/datasheet-188-atf-3-c-19-antibody.html target ATF3 targetClass TFSS targetDescription Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription. targetId GeneCard:ATF3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ATF3 validation Human_-_ATF3(sc-188)(Immunoblot):human_ATF3_SC-188_validation_Myers.pdf vendorId sc-188 vendorName Santa Cruz Biotechnology term Bach1_(sc-14700) tag BACH1SC14700 type Antibody label BACH1 (sc-14700) antibodyDescription Goat polyclonal. BACH1 (C-20) is an affinity purified antibody raised against a peptide mapping near the C-terminus of BACH1 of human origin. Antibody Target: BACH1 lab Snyder lots E1503 orderUrl http://www.scbt.com/datasheet-14700-bach1-c-20-antibody.html target BACH1 targetDescription This gene encodes a transcription factor that belongs to the cap'n'collar type of basic region leucine zipper factor family (CNC-bZip). The encoded protein contains broad complex, tramtrack, bric-a-brac/poxvirus and zinc finger (BTB/POZ) domains, which is atypical of CNC-bZip family members. These BTB/POZ domains facilitate protein-protein interactions and formation of homo- and/or hetero-oligomers. When this encoded protein forms a heterodimer with MafK, it functions as a repressor of Maf recognition element (MARE) and transcription is repressed. Multiple alternatively spliced transcript variants have been identified for this gene. (provided by RefSeq) targetId GeneCard:BACH1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BACH1 validation Human_-_Bach1_(sc-14700)(Immunoblot,IP-MassSpec):human_Bach1_sc-14700_validation_Snyder.pdf vendorId sc-14700 vendorName Santa Cruz Biotechnology term BAF155 tag BAF155 type Antibody label BAF155 (sc-10756) antibodyDescription Rabbit polyclonal. BAF155 (H-76) is raised against amino acids 998-1073 of BAF155 of human origin. Antibody Target: SMARCC1 lab Snyder orderUrl http://www.scbt.com/datasheet-10756-baf155-h-76-antibody.html target SMARCC1 targetClass ChromRem targetDescription BAF155 (SMARCC1, Brg1-Associated Factor, 155 kD) is a ubiquitous component of the SWI/SNF chromatin-remodeling complex. targetId GeneCard:SMARCC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCC1 validation Human_-_BAF155(sc-10756)(Immunoprecipitation,IP-MassSpec):human_BAF155_SC-10756_validation_Snyder.pdf vendorId sc-10756 vendorName Santa Cruz Biotechnology term BAF170 tag BAF170 type Antibody label BAF170 (sc-10757) antibodyDescription Rabbit polyclonal. BAF170 (H-116) is raised against amino acids 1093-1208 of BAF170 of human origin. Antibody Target: SMARCC2 lab Snyder lots E0204 orderUrl http://www.scbt.com/datasheet-10757-baf170-h-116-antibody.html target SMARCC2 targetClass ChromRem targetDescription BAF170 (SMARCC2, Brg1-Associated Factor, 170 kD) is a ubiquitous component of the SWI/SNF chromatin-remodeling complex. targetId GeneCard:SMARCC2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCC2 validation Human_-_BAF170(sc-10757)(Immunoprecipitation,IP-MassSpec):human_BAF170_sc-10757_validation_Snyder.pdf vendorId sc-10757 vendorName Santa Cruz Biotechnology term BATF tag BATF type Antibody label BATF (sc-100974) antibodyDescription Mouse monoclonal. Raised against recombinant B-ATF of human origin. Antibody Target: BATF lab Myers lots D0808 orderUrl http://www.scbt.com/datasheet-100974-b-atf-ww8-antibody.html target BATF targetClass TFSS targetDescription The protein encoded by this gene is a nuclear basic leucine zipper protein that belongs to the AP-1/ATF superfamily of transcription factors. The leucine zipper of this protein mediates dimerization with members of the Jun family of proteins. This protein is thought to be a negative regulator of AP-1/ATF transcriptional events. targetId GeneCard:BATF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BATF validation Human_-_BATF(sc-100974)(Western_blot):human_BATF_SC-100974_validation_Myers.pdf vendorId sc-100974 vendorName Santa Cruz Biotechnology term BCL11A tag BCL11A type Antibody label BCL11A (ab19489) antibodyDescription Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Antibody Target: BCL11A lab Myers orderUrl http://www.abcam.com/Ctip1-antibody-18B12DE6-ab19489.html target BCL11A targetClass TFSS targetDescription This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity) targetId GeneCard:BCL11A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BCL11A validation Human_-_:missing vendorId ab19489 vendorName abcam term BCL11A_(SC-56011) tag BCL11ASC56011 type Antibody label BCL11A (sc-56011) antibodyDescription Mouse monoclonal IgG, raised against BCL11A of human origin. Antibody Target: BCL11A lab Myers lots B2811 orderUrl http://www.scbt.com/datasheet-56011-bcl-11a-14b5-antibody.html target BCL11A targetClass TFSS targetDescription This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. The corresponding mouse gene is a common site of retroviral integration in myeloid leukemia, and may function as a leukemia disease gene, in part, through its interaction with BCL6. During hematopoietic cell differentiation, this gene is down-regulated. It is possibly involved in lymphoma pathogenesis since translocations associated with B-cell malignancies also deregulates its expression. Multiple transcript variants encoding several different isoforms have been found for this gene. (provided by RefSeq) targetId GeneCard:BCL11A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BCL11A validation Human_-_BCL11A_(sc-56011)(Western_blot,IP-MassSpec):human_BCL11A_SC-56011_validation_Myers.pdf vendorId sc-56011 vendorName Santa Cruz Biotechnology term BCL3 tag BCL3 type Antibody label BCL3 (sc-185) antibodyDescription Rabbit polyclonal. Bcl-3(C-14) is an affinity purified antibody raised against a peptide mapping at the C-terminus of Bcl-3 of human origin. Antibody Target: BCL3 lab Myers orderUrl http://www.scbt.com/datasheet-185-bcl-3-c-14-antibody.html target BCL3 targetClass TFSS targetDescription This gene is a proto-oncogene candidate. It is identified by its translocation into the immunoglobulin alpha-locus in some cases of B-cell leukemia. The protein encoded by this gene contains seven ankyrin repeats, which are most closely related to those found in I kappa B proteins. This protein functions as a transcriptional co-activator that activates through its association with NF-kappa B homodimers. The expression of this gene can be induced by NF-kappa B, which forms a part of the autoregulatory loop that controls the nuclear residence of p50 NF-kappa B. (Provided by RefSeq). targetId GeneCard:BCL3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BCL3 validation Human_-_BCL3(Immunoblot):human_BCl3_C-14_validation_Myers.pdf vendorId sc-185 vendorName Santa Cruz Biotechnology term BCLAF1_(SC-101388) tag BCLAF1 type Antibody label BCLAF1 (sc-101388) antibodyDescription Mouse monoclonal IgG, raised against a synthetic peptide corresponding to a.a. 900-909 of BCLAF1 of human origin. Antibody Target: BCLAF1 lab Myers orderUrl http://www.scbt.com/datasheet-101388-bclaf1-m33-p5b11-antibody.html target BCLAF1 targetClass TFSS targetDescription This gene encodes a transcriptional repressor that interacts with several members of the BCL2 family of proteins. Overexpression of this protein induces apoptosis, which can be suppressed by co-expression of BCL2 proteins (RefSeq). targetId GeneCard:BCLAF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BCLAF1 validation Human_-_BCLAF1(sc-101388)(Immunoblot,Western_blot):human_BCLAF1_sc-101388_validation_Myers.pdf vendorId sc-101388 vendorName Santa Cruz Biotechnology term BDP1 tag BDP1 type Antibody label BDP1 (2663) antibodyDescription Rabbit polyclonal - Antiserum 2663 was raised by immunizing rabbits with synthetic peptide CSDRYRIYKAQKLRE (human Bdp1 residues 139?153) coupled to KLH. Antibody Target: BDP1 lab Struhl orderUrl http://www.beatson.gla.ac.uk/ target BDP1 targetClass Pol3F targetDescription 'B double-prime 1', subunit of RNA polymerase III transcription initiation factor IIIB targetId GeneCard:BDP1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BDP1 validation Human_-_BDP1(2663)(IP-MassSpec,Correlation):human_BDP1_2663_validation_Struhl.pdf vendorId 2663 vendorName Dr. Robert J. White at Beatson Institute for Cancer Research term BHLHE40 tag BHLHE40 type Antibody label BHLHE40 (sc-101023) antibodyDescription Mouse monoclonal. Dec-1(S-8) is an IgG2b antibody raised against recombinant DEC1 of human origin. Antibody Target: BHLHE40 lab Myers, Snyder orderUrl http://www.scbt.com/datasheet-101023-dec1-s-8-antibody.html target BHLHE40 targetClass TFSS targetDescription This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation. targetId GeneCard:BHLHE40 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BHLHE40 validation Human_-_BHLHE40(Immunoblot):human_BHLHE40_S-8_validation_Myers.pdf vendorId sc-101023 vendorName Santa Cruz Biotechnology term BHLHE40_(NB100-1800) tag BHLHE40c type Antibody label BHLHE40 (NB100-1800) antibodyDescription Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40 lab Snyder lots A1 orderUrl http://www.novusbio.com/DEC1-Antibody-_NB100-1800.html?rr=true target BHLHE40 targetClass TFSS targetDescription This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation. targetId GeneCard:BHLHE40 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BHLHE40 validation Human_-_BHLHE40_(NB100-1800)(Immunoprecipitation,IP-MassSpec):human_BHLHE40_NB100-1800_validation_Snyder.pdf Mouse-_BHLHE40_(NB100-1800)(Immunoprecipitation,IP-MassSpec):mouse_BHLHE40_NB100-1800_validation_Snyder.pdf vendorId NB100-1800 vendorName Novus Biologicals term BRCA1_(A300-000A) tag BRCA1 type Antibody label BRCA1 (A300-000A) antibodyDescription Rabbit polyclonal recognizing a region between residue 1800 and the C-terminus (residue 1863) of human Breast Cancer Gene 1. Antibody Target: BRCA1 lab Snyder orderUrl http://www.bethyl.com/product/A300-000A/BRCA1_Antibody/ target BRCA1 targetClass TFSS targetDescription Nuclear phosphoprotein that plays a role in maintaining genomic stability, and acts as a tumor suppressor. Associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. Plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers. targetId GeneCard:BRCA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BRCA1 validation Human_-_BRCA1_(A300-000A)(Western_blot,IP-MassSpec):human_BRCA1_validation_Snyder.pdf vendorId A300-000A vendorName Bethyl Laboratories term BRF1 tag BRF1 type Antibody label BRF1 (128) antibodyDescription Rabbit polyclonal - Anti-BRF antibody 128 was raised by immunising rabbits with synthetic peptide KISSKINYSVLRGLS (human BRF residues 533-547) coupled to keyhole limpet haemocyanin. Antibody Target: BRF1 lab Struhl orderUrl http://www.beatson.gla.ac.uk/ target BRF1 targetClass Pol3F targetDescription 'B-related factor 1', subunit of RNA polymerase III transcription initiation factor IIIB targetId GeneCard:BRF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BRF1 validation Human_-_BRF1(128)(IP-MassSpec,Correlation):human_BRF1_128_validation_Struhl.pdf vendorId 128 vendorName Dr. Robert J. White at Beatson Institute for Cancer Research term BRF2 tag BRF2 type Antibody label BRF2 (4295) antibodyDescription Rabbit polyclonal raised by immunizing rabbits with keyhole limpet hemocyanin coupled to synthetic peptides VSRSQQRGLRRVRDLC and SDSEIEQYLRTPQEVR, corresponding to human Brf2 residues 66-80 and 385-400, respectively. Antibody Target: BRF2 lab Struhl orderUrl http://www.beatson.gla.ac.uk/ target BRF2 targetClass Pol3F targetDescription Brf2 is a component of an alternate form of the RNA Polymerase III transcription factor TFIIIB. targetId GeneCard:BRF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BRF2 validation Human_-_BRF2(4295)(Western_blot,Correlation):human_BRF2_4295_validation_Struhl.pdf vendorId 4295 vendorName Dr. Robert J. White at Beatson Institute for Cancer Research term Brg1 tag BRG1 type Antibody label BRG1 (sc-17796) antibodyDescription Mouse monoclonal. Brg-1 (G-7) is raised against amino acids 209-296 mapping near the N-terminus of Brg-1 of human origin. Antibody Target: SMARCA4 lab Snyder lots H1104 orderUrl http://www.scbt.com/datasheet-17796-brg-1-g-7-antibody.html target SMARCA4 targetClass ChromRem targetDescription Brg1 (SMARCA4) is an ATPase subunit of the SWI/SNF chromatin-remodeling complex. targetId GeneCard:SMARCA4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCA4 validation Human_-_BRG1(Immunoprecipitation,IP-MassSpec):human_BRG1_validation_Snyder.pdf vendorId sc-17796 vendorName Santa Cruz Biotechnology term BTF3_(SC-166093) tag BTF3SC166093 type Antibody label BTF3 (sc-166093) antibodyDescription Mouse monoclonal IgG, raised against amino acids 1-206 representing full length BTF3a of human origin. Antibody Target: BTF3 lab Myers lots G2209 orderUrl http://www.scbt.com/datasheet-166093-btf3a-b-a-5-antibody.html target BTF3 targetDescription This gene encodes the basic transcription factor 3. This protein forms a stable complex with RNA polymerase IIB and is required for transcriptional initiation. Alternative splicing results in multiple transcript variants encoding different isoforms. This gene has multiple pseudogenes. (provided by RefSeq) targetId GeneCard:BTF3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BTF3 validation Human_-_BTF3_(sc-166093)(Western_blot,IP-MassSpec):human_BTF3_SC-166093_validation_Myers.pdf vendorId sc-166093 vendorName Santa Cruz Biotechnology term c-Fos tag CFOS type Antibody label c-Fos (sc-7202) antibodyDescription Rabbit polyclonal affinity purified to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: FOS lab Snyder lots K0810 orderUrl http://www.scbt.com/product.php?datasheet=7202 target FOS targetClass TFSS targetDescription Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper. targetId GeneCard:FOS targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOS validation Human_-_c-Fos_(sc-7202)(Immunoprecipitation,Motif_Enrichment):human_c-Fos_validation_Snyder.pdf vendorId sc-7202 vendorName Santa Cruz Biotechnology term c-Jun tag CJUN type Antibody label c-Jun (sc-1694) antibodyDescription Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: JUN lab Snyder lots C2206 orderUrl http://www.scbt.com/product.php?datasheet=1694 target JUN targetClass TFSS targetDescription Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper. targetId GeneCard:JUN targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=JUN validation Human_-_c-Jun(Immunoprecipitation,Motif_Enrichment):human_c-Jun_validation_Snyder.pdf Mouse_-_c-Jun(Immunoprecipitation,ChIP-seq):mouse_c-Jun_validation_Snyder.pdf vendorId sc-1694 vendorName Santa Cruz Biotechnology term c-Myb_(SC-7874) tag CMYB type Antibody label c-Myb (sc-7874) antibodyDescription Rabbit polyclonal IgG, Epitope corresponding to amino acids 500-640 mapping at the C-terminus of c-Myb of human origin. Antibody Target: MYB lab Snyder orderUrl http://www.scbt.com/datasheet-7874-c-myb-h-141-antibody.html target MYB targetDescription Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells. targetId GeneCard:MYB targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MYB validation Mouse_-_:missing vendorId sc-7874 vendorName Santa Cruz Biotechnology term c-Myc tag CMYC type Antibody label c-Myc (sc-764) antibodyDescription Rabbit polyclonal affinity purified to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC lab Crawford, Snyder lots H0107 orderUrl http://www.scbt.com/product.php?datasheet=764 target MYC targetClass TFSS targetDescription transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease targetId GeneCard:MYC targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MYC validation Human_-_c-Myc_(sc-764)(Western_blot):human_c-MYC_SC-764X_image_validation_Crawford.pdf Mouse_-_c-Myc_(sc-764)(Immunoprecipitation,ChIP-seq):mouse_c-Myc_validation_Snyder.pdf vendorId sc-764 vendorName Santa Cruz Biotechnology term CBP_(sc-369) tag CBPSC369 type Antibody label CBP (sc-369) antibodyDescription Rabbit polyclonal A/G affinity purified, epitope mapping at the N-terminus of CBP of human origin. Antibody Target: CREBB369P lab Struhl orderUrl http://www.scbt.com/datasheet-369-cbp-a-22-antibody.html target CREBBP targetDescription CBP is a histone acetyl transferase that promotes transcription. CBP is recruited by a variety of transcription factors to promoters and enhancers. targetId GeneCard:CREBBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CREBBP validation Human_-_CBP_(sc-369)(Western_blot,ChIP-seq):human_CBP_sc-369_validation_Struhl.pdf vendorId sc-369 vendorName Santa Cruz Biotechnology term CBX2 tag CBX2 type Antibody label CBX2 (A302-524A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated. Antibody Target: CBX2 lab Bernstein lots A302-524A-1 orderUrl http://www.bethyl.com/product/A302-524A target CBX2 targetDescription Chromobox protein homolog 2 is a component of the polycomb group (PcG) multiprotein PRC1 complex, a complex required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. [taken from the Universal Protein Resource (UniProt) www.uniprot.org/uniprot/P19474] targetId GeneCard:CBX2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CBX2 validation Human_-_CBX2_(A302-524A)(ChIP-seq,Western_blot):human_CBX2_validation_Bernstein.pdf vendorId A302-524A vendorName Bethyl Laboratories term CBX3_(SC-101004) tag CBX3SC101004 type Antibody label CBX3 (sc-101004) antibodyDescription Mouse monoclonal IgG, raised against recombinant CBX3 of human origin. Antibody Target: CBX3 lab Myers lots G1410 orderUrl http://www.scbt.com/datasheet-101004-hp1gamma-s-19-antibody.html target CBX3 targetDescription At the nuclear envelope, the nuclear lamina and heterochromatin are adjacent to the inner nuclear membrane. The protein encoded by this gene binds DNA and is a component of heterochromatin. This protein also can bind lamin B receptor, an integral membrane protein found in the inner nuclear membrane. The dual binding functions of the encoded protein may explain the association of heterochromatin with the inner nuclear membrane. This protein binds histone H3 tails methylated at Lys-9 sites. This protein is also recruited to sites of ultraviolet-induced DNA damage and double-strand breaks. Two transcript variants encoding the same protein but differing in the 5' UTR, have been found for this gene. targetId GeneCard:CBX3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CBX3 validation Human_-_CBX3_(sc-101004)(Western_blot,IP-MassSpec):human_CBX3_SC-101004_validation_Myers.pdf vendorId sc-101004 vendorName Santa Cruz Biotechnology term CBX8 tag CBX8 type Antibody label CBX8 (A300-882A) antibodyDescription Rabbit polyclonal antigen affinity purified, Unconjugated Antibody Target: CBX8 lab Bernstein lots A300-882A-1 orderUrl http://www.bethyl.com/product/A300-882A/CBX8_Antibody?referrer=search_default target CBX8 targetDescription CBX8 is part of the polycomb group of proteins that are important in embryogenesis and human tumorigenesis and regulates a number of genes involved in cell growth and survival. There are at least 5 CBX proteins in mammals. CBX proteins associate with the core polycomb repressive complex 1 (PRC1) that functions to maintain the transcriptionally repressive state of genes during development. targetId GeneCard:CBX8 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CBX8 validation Human_-_CBX8_(A300-882A)(ChIP-seq,Western_blot):human_CBX8_validation_Bernstein.pdf vendorId A300-882A vendorName Bethyl Laboratories term CCNT2 tag CCNT2 type Antibody label CCNT2 (sc-12419) antibodyDescription Goat polyclonal. Raised against an internal region of human CycT2a/b. Antibody Target: CCNT2 lab Struhl lots H2306 orderUrl http://www.scbt.com/datasheet-12419-cyclin-t2a-b-a-20-antibody.html target CCNT2 targetClass Other targetDescription CycT2 is one of three cyclins that can form a heterodimer with cyclin-dependent kinase 9 (CDK9). The heterodimer is known as positive elongation factor b (P-TEFb) and is responsible for the phosphophorylation of Ser2 of the heptad repeat in the C-terminal domain of RNA polymerase II as well as the negative elongation factors DSIF (hSpt4/hSpt5) and NELF. Phosphorylation of RNA polymerase II and the negative elongation factors by P-TEFb promotes elongation. CycT2 contains a leucine rich domain capable of binding to the C-terminal domain of RNA polymerase II. targetId GeneCard:CCNT2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCNT2 validation Human_-_:missing vendorId sc-12419 vendorName Santa Cruz Biotechnology term CDK9_(ab75898) tag CDK9AB75898 type Antibody label CDK9 (ab75898) antibodyDescription Rabbit polyclonal A/G affinity purified, immunogen= multiple synthetic peptides corresponding to C-terminal and N-terminal domains of the protein coded by the human gene cdk9 (PITALRE). Antibody Target: CDK9 lab Struhl orderUrl http://www.abcam.com/Cdk9-antibody-ab6544.html target CDK9 targetDescription Cyclin dependent kinase 9 (CDK9) heterodimerizes with Cyclin T1 or Cyclin T2. The heterodimer is also known as positive elongation factor B (P-TEFb) and is responsible for the phosphorylation of Ser2 of the RNA polymerase II C-terminal targetId GeneCard:CDK9 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CDK9 validation Human_-_CDK9_(ab75898)(Western_blot,ChIP-seq):human_CDK9_ab75898_validation_Struhl.pdf vendorId ab75898 vendorName abcam term CDP_(sc-6327) tag CDPSC6327 type Antibody label CDP (sc-6327) antibodyDescription Goat polyclonal. CDP (C-20) is an affinity purified antibody raised against a peptide mapping at the C-terminus of CDP of mouse origin. Antibody Target: CUX1 lab Snyder lots E0709 orderUrl http://www.scbt.com/datasheet-6327-cdp-c-20-antibody.html target CUX1 targetDescription CDP (for CCAAT displacement protein) was identified as a repressor for tran- scription of developmentally regulated genes. It is a homeodomain protein that appears to compete with transcriptional activating proteins for binding to the promoter regions of various genes. CDP contains three cut repeats which function as DNA binding domains. It has been demonstrated that cut repeat domains have the capacity to bind to DNA in conjunction with or independently of homeodomain DNA binding. CDP has been shown to be the DNA-binding subunit of the HiNF-D complex, which contains cyclin A, Cdc2 and an Rb-related protein in addition to CDP. Histone expression is required for the transition to S phase in the cell cycle. The HiNF-D complex regulates the transcription of Histone H4, H3 and H1 genes, allowing cells to progress from G1 to S phase. targetId GeneCard:CUX1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CUX1 validation Human_-_CDP_(sc-6327)(Immunoprecipitation,IP-MassSpec):human_CDP_BioTech_validation_Snyder.pdf vendorId sc-6327 vendorName Santa Cruz Biotechnology term CEBPB tag CEBPB type Antibody label CEBPB (sc-150) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPB of rat origin. Antibody Target: CEBPB lab Snyder, Myers lots I1010 orderUrl http://www.scbt.com/datasheet-150-c-ebp-beta-c-19-antibody.html target CEBPB targetClass TFSS targetDescription Epitope mapping at the C-terminus of C/EBP-beta of rat origin targetId GeneCard:CEBPB targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CEBPB validation Human_-_CEBPB_(sc-150)(Western_blot,IP-MassSpec):human_CEBPB_SC-150_validation_Myers.pdf Human_-_CEBPB(sc-150)(Immunoprecipitation,Motif_Enrichment):human_CEBPbeta_validation_Snyder.pdf Mouse_-_:missing vendorId sc-150 vendorName Santa Cruz Biotechnology term CEBPB_(SC-150) tag CEBPBSC150 type Antibody label CEBPB (sc-150) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPB of rat origin. Antibody Target: CEBPB lab Snyder,Myers lots I1010 orderUrl http://www.scbt.com/datasheet-150-c-ebp-beta-c-19-antibody.html target CEBPB targetClass TFSS targetDescription Epitope mapping at the C-terminus of C/EBP-beta of rat origin targetId GeneCard:CEBPB targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CEBPB validation Human_-_CEBPB_(sc-150)(Western_blot,IP-MassSpec):human_CEBPB_SC-150_validation_Myers.pdf Human_-_CEBPB(sc-150)(Immunoprecipitation,Motif_Enrichment):human_CEBPbeta_validation_Snyder.pdf Mouse_-_:missing vendorId sc-150 vendorName Santa Cruz Biotechnology term CEBPD_(SC-636) tag CEBPDSC636 type Antibody label CEBPD (sc-636) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPD of human origin. Antibody Target: CEBPD lab Myers lots C1010 orderUrl http://www.scbt.com/datasheet-636-c-ebp-delta-m-17-antibody.html target CEBPD targetDescription The protein encoded by this intronless gene is a bZIP transcription factor which can bind as a homodimer to certain DNA regulatory regions. It can also form heterodimers with the related protein CEBP-alpha. The encoded protein is important in the regulation of genes involved in immune and inflammatory responses, and may be involved in the regulation of genes associated with activation and/or differentiation of macrophages. The cytogenetic location of this locus has been reported as both 8p11 and 8q11 (provided by RefSeq). targetId GeneCard:CEBPD targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CEBPD validation Human_-_CEBPD_(sc-636)(Western_blot,IP-MassSpec):human_CEBPD_SC-636_validation_Myers.pdf vendorId sc-636 vendorName Santa Cruz Biotechnology term CEBPZ tag CEBPZ type Antibody label CEBPZ (SAB2100398) antibodyDescription Rabbit polyclonal affinity purified, immunogen sequence= KDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK. Antibody Target: CEBPZ lab Snyder lots QC8343 orderUrl http://www.sigmaaldrich.com/catalog/ProductDetail.do?lang=en&N4=SAB2100398 target CEBPZ targetDescription Stimulates transcription from the HSP70 promoter. targetId GeneCard:CEBPZ targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CEBPZ validation Human_-_CEBPZ(Immunoprecipitation,IP-MassSpec):human_CEBPZ_validation_Snyder.pdf vendorId SAB2100398 vendorName Sigma-Aldrich term CELF1 tag CELF1 type Antibody label CELF1 (05-621) antibodyDescription Mouse monoclonal. Raised against full-length GST fusion protein corresponding to human CUG-BP1, also known as heterogeneous nuclear ribonucleoprotein (hnRNP) hNab50. Antibody Target: CELF1 lab Tenenbaum orderUrl http://www.millipore.com/catalogue/item/05-621 target CELF1 targetDescription Embryo deadenylation element-binding protein homolog (Homo sapiens) targetId GeneCard:CELF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CELF1 validation Human_-_CELF1_(05-621)(Western_blot,Immunoprecipitation):human_CELF1_05-621_validation_Tenenbaum.pdf vendorId 05-621 vendorName Millipore term CHD1_(A301-218A) tag CHD1A301218A type Antibody label CHD1 (A301-218A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: CHD1 lab Bernstein lots A301-218A-1 orderUrl http://www.bethyl.com/product/A301-218A target CHD1 targetDescription CHD1 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription. The members of the CHD family of proteins possess 3 common structural and functional domains: a chromodomain (chromatin organization modifier), an SNF2-like helicase/ATPase domain, and a C-terminal DNA-binding domain. CHD1 has been shown to interact with the transcriptional corepressor NCoR and histone deacetylase 1 indicating a role in transcriptional regulation. CHD1 has also been shown to interact with the Paf1 complex and Rtf1 implicating an additional role in transcriptional elongation. Alternate names for CHD1 include chromodomain-helicase-DNA-binding protein 1, ATP-dependent helicase CHD1, and DKFZp686E2337. targetId GeneCard:CHD1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CHD1 validation Human_-_CHD1_(A301-218A)(ChIP-String,ChIP-seq):human_CHD1_validation_Bernstein.pdf vendorId A301-218A vendorName Bethyl Laboratories term CHD1_(NB100-60411) tag CHD1NB10060411 type Antibody label CHD1 (NB100-60411) antibodyDescription Rabbit polyclonal affinity purified, The epitope recognized by this antibody maps to a region between residue 1660 and 1710 of human chromodomain helicase DNA binding protein 1 using the numbering given in entry NP_001261.2 (GeneID 1105). Antibody Target: CHD1 lab Snyder lots A1 orderUrl http://www.novusbio.com/CHD1-Antibody_NB100-60411.html target CHD1 targetDescription ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells targetId GeneCard:CHD1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CHD1 validation Human_-_CHD1_(NB100-60411)(Immunoprecipitation,IP-MassSpec):human_CHD1_NB100-60411_validation_Snyder.pdf Mouse_-_CHD1_(NB100-60411)(Immunoprecipitation,ChIP-seq):mouse_CHD1_validation_Snyder.pdf vendorId NB100-60411 vendorName Novus Biologicals term CHD2_(AB68301) tag CHD2 type Antibody label CHD2 (ab68301) antibodyDescription Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2 lab Snyder orderUrl http://www.abcam.com/CHD2-antibody-ab68301.html target CHD2 targetClass ChromRem targetDescription CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. targetId GeneCard:CHD2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CHD2 validation Human_-_:missing Mouse_-_:missing vendorId ab68301 vendorName abcam term CHD4_Mi2 tag CHD4MI2 type Antibody label CHD4/Mi2 (A301-081A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: CHD4 lab Bernstein lots A301-081A-1 orderUrl http://www.bethyl.com/product/A301-081A/CHD4Mi2_beta_Antibody?referrer=search_default target CHD4 targetDescription CHD4/Mi2beta is a helicase component of the nucleosome remodeling and deacetylase (NuRD) complex that functions to remodel chromatin and repress transcription. Outside of the NuRD complex, CHD4/Mi2beta can function as an activator of transcription in association with p300 histone acetyltransferase. targetId GeneCard:CHD4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CHD4 validation Human_-_CHD4_(A301-081A)(ChIP-seq,Western_blot):human_CHD4_validation_Bernstein.pdf vendorId A301-081A vendorName Bethyl Laboratories term CHD7_(A301-223A-1) tag CHD7A301223A1 type Antibody label CHD7 (A301-223A) antibodyDescription Rabbit polyclonal antigen affinity purified, unconjugated, liquid. Antibody Target: CHD7 lab Bernstein lots A301-223A-1 orderUrl http://www.bethyl.com/product/A301-223A target CHD7 targetDescription CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription. targetId GeneCard:CHD7 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CHD7 validation Human_-_CHD7_(A301-223A)(ChIP-seq,Western_blot):human_CHD7_A301-223A-1_validation_Bernstein.pdf vendorId A301-223A vendorName Bethyl Laboratories term COREST_(ab24166) tag CORESTAB24166 type Antibody label RCOR1/COREST (ab24166) antibodyDescription Rabbit polyclonal affinity purified, synthetic peptide conjugated to KLH derived from within residues 400 to the C-terminus of Human CoREST. Note: This antibody has since been discontinued. Full product information is attached as part of validation document. Antibody Target: RCOR1 lab Snyder lots 834865 orderUrl http://www.abcam.com/CoREST-antibody-ChIP-Grade-ab24166.html target RCOR1 targetDescription Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates. targetId GeneCard:RCOR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RCOR1 validation Human_-_COREST_(ab24166)(Western_blot,ChIP-seq):human_COREST_ab24166_validation_Snyder.pdf vendorId ab24166 vendorName abcam term COREST_(sc-30189) tag CORESTSC30189 type Antibody label RCOR1/COREST (sc30189) antibodyDescription Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin Antibody Target: RCOR1 lab Snyder lots C0806 orderUrl http://www.scbt.com/datasheet-30189-corest-h-65-antibody.html target RCOR1 targetDescription Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates. targetId GeneCard:RCOR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RCOR1 validation Human_-_COREST_(sc-30189)(Immunoprecipitation,ChIP-seq):human_COREST_sc-30189_validation_Snyder.pdf Mouse_-_COREST_(sc-30189)(Immunoprecipitation,ChIP-seq):mouse_COREST_sc-30189_validation_Snyder.pdf vendorId sc-30189 vendorName Santa Cruz Biotechnology term CREB1_(06-863) tag CREB106863 type Antibody label CREB1 (06-863) antibodyDescription Rabbit polyclonal A/G affinity purified, immunogen= KLH-conjugated, synthetic peptide (CSGAENQ QSGDAAVTEAENQQ) corresponding to a.a. 5-24 of human CREB. The immunizing sequence is identical in pig, shares 19 of 20 residues with mouse and bovine and 18 of 20 residues with rat. Antibody Target: CREB1 lab Struhl orderUrl http://www.millipore.com/catalogue/item/06-863 target CREB1 targetDescription CREB is a basic leucine zipper transcription factor. CREB is activated by phosphorylation of Ser133 in response to a range of stimuli by including a number of transcription factors PKA, CAMK and MAPKs. CREB is ubiquitously expressed, but has been specifically implicated in the development in neurite outgrowth and neuronal differentiation. targetId GeneCard:CREB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CREB1 validation Human_-_CREB1_(06-863)(Western_blot,ChIP-seq):human_CREB1_06-863_validation_Struhl.pdf vendorId 06-863 vendorName Millipore term CREB1_(9198) tag CREB19198 type Antibody label CREB1 (9198) antibodyDescription Rabbit monoclonal A/G affinity purified antibody produced by immunizing animals with a synthetic phosphopeptide corresponding to residues surrounding Ser133 of human CREB. Antibody Target: CREB1 lab Struhl orderUrl http://www.cellsignal.com/products/9198.html target CREB1 targetDescription CREB is a basic leucine zipper transcription factor. CREB is activated by phosphorylation of Ser133 in response to a range of stimuli by including a number of transcription factors PKA, CAMK and MAPKs. CREB is ubiquitously expressed, but has been specifically implicated in the development in neurite outgrowth and neuronal differentiation. targetId GeneCard:CREB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CREB1 validation Human_-_CREB1_(9188)_(Cell_Signaling_9198)(Western_blot,ChIP-seq):human_CREB1_9198_validation_Struhl.pdf vendorId 9198 vendorName Cell Signaling Technology term CREB1_(SC-240) tag CREB1SC240 type Antibody label CREB1 (sc-240) antibodyDescription Mouse monoclonal IgG1; raised against amino acids 254-327 mapping within the DNA binding and dimerization domain of human CREB-1. Antibody Target: CREB1 lab Myers lots C2306 orderUrl http://www.scbt.com/datasheet-240-creb-1-x-12-antibody.html target CREB1 targetDescription This gene encodes a transcription factor that is a member of the leucine zipper family of DNA binding proteins. This protein binds as a homodimer to the cAMP-responsive element, an octameric palindrome. The protein is phosphorylated by several protein kinases, and induces transcription of genes in response to hormonal stimulation of the cAMP pathway. Alternate splicing of this gene results in two transcript variants encoding different isoforms. (provided by RefSeq) targetId GeneCard:CREB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CREB1 validation Human_-_CREB1_(sc-240)(Western_blot,IP-MassSpec):human_CREB1_SC-240_validation_Myers.pdf vendorId sc-240 vendorName Santa Cruz Biotechnology term CTCF tag CTCF type Antibody label CTCF (07-729) antibodyDescription Rabbit polyclonal. Antibody Target: CTCF lab Myers, Hardison, Snyder lots 1350637 DAM1472197 orderUrl http://www.millipore.com/catalogue/item/07-729 target CTCF targetClass TFSS targetDescription CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances. targetId GeneCard:CTCF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF validation Human_-_CTCF_(07-729)(Western_blot,Motif_Enrichment):human_CTCF_validation_Myers.pdf Human_-_CTCF_(07-729)(Western_blot):human_CTCF_07-729_validation_Snyder.pdf Mouse_-_CTCF(Western_blot):mouse_CTCF_validation_Hardison.pdf vendorId 07-729 vendorName Millipore term CTCF_(2899) tag CTCF2899 type Antibody label CTCF (2899) antibodyDescription Rabbit polyclonal A/G affinity purified, detects endogenous levels of total CTCF protein and doesn't cross-react with BORIS. Antibody Target: CTCF lab Stam lots 1 orderUrl http://www.cellsignal.com/products/2899.html target CTCF targetClass TFSS targetDescription CTCF is a ubiquitously expressed 11 zinc-finger protein that plays a central role in multiple complex processes, including transcription, imprinting, long-range chromatin interactions, subnuclear localization. CTCF has also been connected with multiple malignancies. targetId GeneCard:CTCF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF validation Human_-_CTCF_(2899)(Western_blot):human_CTCF_2899_validation_Stam.pdf vendorId 2899 vendorName Cell Signaling Technology term CTCF_(SC-15914) tag CTCFb type Antibody label CTCF (sc-15914) antibodyDescription Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF lab Snyder orderUrl http://www.scbt.com/datasheet-15914-ctcf-c-20-antibody.html target CTCF targetClass TFSS targetDescription Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. targetId GeneCard:CTCF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF validation Human_-_:missing Mouse_-_:missing vendorId sc-15914 vendorName Santa Cruz Biotechnology term CTCF_(SC-5916) tag CTCFc type Antibody label CTCF (sc-5916) antibodyDescription Goat polyclonal IgG, epitope mapping at the N-terminus of CTCF of human origin. Antibody Target: CTCF lab Myers lots K0902 orderUrl http://www.scbt.com/datasheet-5916-ctcf-n-17-antibody.html target CTCF targetClass TFSS targetDescription This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. (provided by RefSeq) targetId GeneCard:CTCF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF validation Human_-_:missing vendorId sc-5916 vendorName Santa Cruz Biotechnology term CTCFL_(SC-98982) tag CTCFL type Antibody label CTCFL (sc-98982) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to amino acids 91-210 mapping within an internal region of BORIS(CTCFL) of human origin. Antibody Target: CTCFL lab Myers lots E0109 orderUrl http://www.scbt.com/datasheet-98982-boris-h-120-antibody.html target CTCFL targetClass TFSS targetDescription CCCTC-binding factor (CTCF), an 11-zinc-finger factor involved in gene regulation, utilizes different zinc fingers to bind varying DNA target sites. CTCF forms methylation-sensitive insulators that regulate X-chromosome inactivation. This gene is a paralog of CTCF and appears to be expressed primarily in the cytoplasm of spermatocytes, unlike CTCF which is expressed primarily in the nucleus of somatic cells. CTCF and the protein encoded by this gene are normally expressed in a mutually exclusive pattern that correlates with resetting of methylation marks during male germ cell differentiation. (provided by RefSeq) targetId GeneCard:CTCFL targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCFL validation Human_-_:missing vendorId sc-98982 vendorName Santa Cruz Biotechnology term CtBP2 tag CTBP2 type Antibody label CtBP2 (612044) antibodyDescription Mouse monoclonal. Antibody Target: CTBP2 lab Farnham orderUrl http://www.bdbiosciences.com/ptProduct.jsp?prodId=229326 target CTBP2 targetDescription C-terminal binding protein 2 targetId GeneCard:CTBP2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTBP2 validation Human_-_CtBP2(Western_blot,siRNA):human_CtBP2_validation_Farnham.pdf vendorId 612044 vendorName BD Biosciences term CycT1_(sc-10750) tag CYCT1SC10750 type Antibody label CycT1 (sc-10750) antibodyDescription Rabbit polyclonal A/G affinity purified, epitope corresponding to amino acids 261-505 mapping to an internal region of cyclin T1 (CycT1) of human origin. Antibody Target: CCNT1 lab Struhl lots H0807 orderUrl http://www.scbt.com/datasheet-10750-cyclin-t1-h-245-antibody.html target CCNT1 targetDescription Cyclin T1 is a cyclin that forms heterodimers with the cyclin dependent kinase CDK9. CDK9 is responsible for phosphorylating Ser2 of the heptad repeat of the C-terminal domain of the large subunit of RNA polymerase II, and negative elongation factors NELF and DSIF. Cyclin T1 makes contacts with RNAPII and nascent mRNA and as such recruits CDK9 to facilitate release of stalled RNAPII and productive elongation. targetId GeneCard:CCNT1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCNT1 validation Human_-_CycT1_(sc-10750)(Western_blot,Immunoprecipitation):human_CycT1_sc-10750_validation_Struhl.pdf vendorId sc-10750 vendorName Santa Cruz Biotechnology term E2F1 tag E2F1 type Antibody label E2F1 (05-379) antibodyDescription Mouse monoclonal. E2F1(KH20 and KH95) Epitope for KH20 has been mapped to amino acids 1-89; KH95 to amino acids 342-386. Antibody Target: E2F1 lab Farnham orderUrl http://www.millipore.com/catalogue/item/05-379# target E2F1 targetClass TFSS targetDescription E2F1, the original member of the E2F family of transcription factors, was identified as a cellular protein with DNA binding activity associated with the adenovirus E2 gene promoter. E2F1 is cell cycle regulated with very low levels in early G1, then increasing levels as cells move from G1 to S, and highest levels of protein at the G1/S boundary, which is consistent with its role in S-phase entry. targetId GeneCard:E2F1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=E2F1 validation Human_-_E2F1(Immunoprecipitation-Western_blot,ChIP-seq):human_E2F1_HA-E2F1_validation_Farnham.pdf vendorId 05-379 vendorName Millipore term E2F4 tag E2F4 type Antibody label E2F4 (sc-866) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: E2F4 lab Farnham, Snyder orderUrl http://www.scbt.com/datasheet-866-e2f-4-c-20-antibody.html target E2F4 targetClass TFSS targetDescription mapping at the C-terminus of E2F4 of human origin targetId GeneCard:E2F4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=E2F4 validation Human_-_E2F4(sc-866)(Immunoprecipitation-Western_blot,ChIP-seq):human_E2F4_validation_Farnham.pdf Mouse_-_E2F4_(sc-866)(Immunoprecipitation,ChIP-seq):mouse_E2F4_validation_Snyder.pdf vendorId sc-866 vendorName Santa Cruz Biotechnology term E2F6 tag E2F6 type Antibody label E2F6 (sc-22823) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to a.a. 232-281 mapping at the C-terminus of E2F-6 of human origin. Antibody Target: E2F6 lab Farnham, Myers lots D1206 (Myers) orderUrl http://www.scbt.com/datasheet-22823-e2f-6-h-50-antibody.html target E2F6 targetClass TFSS targetDescription This gene encodes a member of the E2F transcription factor protein family. E2F family members play a crucial role in control of the cell cycle and of the action of tumor suppressor proteins. They are also a target of the transforming proteins of small DNA tumor viruses. Many E2F proteins contain several evolutionarily conserved domains: a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. The encoded protein of this gene is atypical because it lacks the transactivation and tumor suppressor protein association domains. It contains a modular suppression domain and is an inhibitor of E2F-dependent transcription. The protein is part of a multimeric protein complex that contains a histone methyltransferase and the transcription factors Mga and Max. Multiple transcript variants have been reported for this gene, but it has not been clearly demonstrated that they encode valid isoforms (RefSeq). targetId GeneCard:E2F6 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=E2F6 validation Human_-_E2F6(sc-22823)(Western_blot,siRNA-ChIP):human_E2F6_validation_Farnham.pdf Human_-_E2F6_(sc-22823)(Western_blot,IP-MassSpec):human_E2F6_validation_Myers.pdf vendorId sc-22823 vendorName Santa Cruz Biotechnology term EBF1_(SC-137065) tag EBF1 type Antibody label EBF1 (sc-137065) antibodyDescription Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1 lab Myers lots J0505 orderUrl http://www.scbt.com/datasheet-137065-ebf-c-8-antibody.html target EBF1 targetClass TFSS targetDescription Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity). targetId GeneCard:EBF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EBF1 validation Human_-_EBF1_(sc-137065)(Immunoprecipitation-Western_blot,IP-MassSpec):human_EBF1_SC-137065_validation_Myers.pdf vendorId sc-137065 vendorName Santa Cruz Biotechnology term eGFP-BACH1 tag BACH1 type Antibody label BACH1 (eGFP-BACH1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor BACH1. Antibody Target: eGFP-BACH1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-BACH1 targetDescription This gene encodes a transcription factor that belongs to the cap'n'collar type of basic region leucine zipper factor family (CNC-bZip). The encoded protein contains broad complex, tramtrack, bric-a-brac/poxvirus and zinc finger (BTB/POZ) domains, which is atypical of CNC-bZip family members (provided by RefSeq) targetId GeneCard:BACH1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=BACH1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-BACH1 vendorName Dr. Kevin White at University of Chicago term eGFP-CCNE1 tag CCNE1 type Antibody label CCNE1 (eGFP-CCNE1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor CCNE1. Antibody Target: eGFP-CCNE1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-CCNE1 targetDescription The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. (provided by RefSeq) targetId GeneCard:CCNE1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCNE1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-CCNE1 vendorName Dr. Kevin White at University of Chicago term eGFP-CDKN1B tag CDKN1B type Antibody label CDKN1B (eGFP-CDKN1B) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor CDKN1B. Antibody Target: eGFP-CDKN1B lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-CDKN1B targetDescription This gene encodes a cyclin-dependent kinase inhibitor, which shares a limited similarity with CDK inhibitor CDKN1A/p21. The encoded protein binds to and prevents the activation of cyclin E-CDK2 or cyclin D-CDK4 complexes, and thus controls the cell cycle progression at G1 (provided by RefSeq) targetId GeneCard:CDKN1B targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CDKN1B validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-CDKN1B vendorName Dr. Kevin White at University of Chicago term eGFP-E2F1 tag E2F1 type Antibody label E2F1 (eGFP-E2F1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor E2F1. Antibody Target: eGFP-E2F1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-E2F1 targetClass TFSS targetDescription The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses (provided by RefSeq) targetId GeneCard:E2F1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=E2F1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-E2F1 vendorName Dr. Kevin White at University of Chicago term eGFP-ELF1 tag ELF1 type Antibody label ELF1 (eGFP-ELF1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor ELF1. Antibody Target: eGFP-ELF1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-ELF1 targetDescription This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants (provided by RefSeq) targetId GeneCard:ELF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ELF1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-ELF1 vendorName Dr. Kevin White at University of Chicago term eGFP-ESR tag ESR type Antibody label ESR (eGFP-ESR) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor ESRA. Antibody Target: eGFP-ESR lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-ESR1 targetClass TFSS targetDescription This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. (provided by RefSeq) targetId GeneCard:ESR targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ESR1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-ESR vendorName Dr. Kevin White at University of Chicago term eGFP-FOS tag FOSe type Antibody label FOS (eGFP-FOS) antibodyDescription Goat polyclonal. Antibody Target: eGFP-FOS lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-FOS targetClass TFSS targetDescription FOS targetId GeneCard:FOS targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOS validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId Missing vendorName Dr. Kevin White at University of Chicago term eGFP-GATA2 tag GATA2e type Antibody label GATA2 (eGFP-GATA2) antibodyDescription Goat polyclonal. Antibody Target: GATA2 lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-GATA2 targetClass TFSS targetDescription GATA2 targetId GeneCard:GATA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA2 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-GATA2 vendorName Dr. Kevin White at University of Chicago term eGFP-HDAC8 tag HDAC8e type Antibody label HDAC8 (eGFP-HDAC8) antibodyDescription Goat polyclonal. Antibody Target: eGFP-HDAC8 lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-HDAC8 targetClass HISase targetDescription HDAC8 targetId GeneCard:HDAC8 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HDAC8 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-HDAC8 vendorName Dr. Kevin White at University of Chicago term eGFP-HMGB1 tag HMGB1 type Antibody label HMGB1 (eGFP-HMGB1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor HMGB1. Antibody Target: eGFP-HMGB1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-HMGB1 targetDescription DNA binding proteins that associates with chromatin and has the ability to bend DNA. Binds preferentially single-stranded DNA. Involved in V(D)J recombination by acting as a cofactor of the RAG complex. (provided by RefSeq) targetId GeneCard:HMGB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HMGB1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-HMGB1 vendorName Dr. Kevin White at University of Chicago term eGFP-ILF2 tag ILF2 type Antibody label ILF2 (eGFP-ILF2) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor ILF2. Antibody Target: eGFP-ILF2 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-ILF2 targetDescription Nuclear factor of activated T-cells (NFAT) is a transcription factor required for T-cell expression of the interleukin 2 gene. NFAT binds to a sequence in the interleukin 2 gene enhancer known as the antigen receptor response element 2. In addition, NFAT can bind RNA and is an essential component for encapsidation and protein priming of hepatitis B viral polymerase. (provided by RefSeq) targetId GeneCard:ILF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ILF2 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-ILF2 vendorName Dr. Kevin White at University of Chicago term eGFP-JunB tag JUNBe type Antibody label JUNB (eGFP-JunB) antibodyDescription Goat polyclonal. Antibody Target: JUNB lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-JUNB targetClass TFSS targetDescription JUNB targetId GeneCard:JUNB targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=JUNB validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-JUNB vendorName Dr. Kevin White at University of Chicago term eGFP-JunD tag JUNDe type Antibody label JUND (eGFP-JUND) antibodyDescription Goat polyclonal. Antibody Target: JUND lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-JUND targetClass TFSS targetDescription JUND targetId GeneCard:JUND targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=JUND validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-JUND vendorName Dr. Kevin White at University of Chicago term eGFP-MLL5 tag MLL5 type Antibody label MLL5 (eGFP-MLL5) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor MLL5. Antibody Target: eGFP-MLL5 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-MLL5 targetDescription This gene is a member of the myeloid/lymphoid or mixed-lineage leukemia (MLL) family and encodes a protein with an N-terminal PHD zinc finger and a central SET domain. Overexpression of the protein inhibits cell cycle progression. (provided by RefSeq) targetId GeneCard:MLL5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MLL5 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-MLL5 vendorName Dr. Kevin White at University of Chicago term eGFP-NCOR1 tag NCOR1 type Antibody label NCOR1 (eGFP-NCOR1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor NCOR1. Antibody Target: eGFP-NCOR1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-NCOR1 targetDescription This gene encodes a protein that mediates ligand-independent transcription repression of thyroid-hormone and retinoic-acid receptors by promoting chromatin condensation and preventing access of the transcription machinery. It is part of a complex which also includes histone deacetylases and transcriptional regulators similar to the yeast protein Sin3p. This gene is located between the Charcot-Marie-Tooth and Smith-Magenis syndrome critical regions on chromosome 17 (provided by RefSeq) targetId GeneCard:NCOR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NCOR1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-NCOR1 vendorName Dr. Kevin White at University of Chicago term eGFP-NF90 tag NF90 type Antibody label NF90 (eGFP-NF90) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor NF90. Antibody Target: eGFP-NF90 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-NF90 targetDescription NF90 (nuclear factor of activated T cells 90 kDa), also known as NFAR is a ubiquitously expressed nuclear protein that exists in a heterodimer with NF45. (provided by RefSeq) targetId GeneCard:ILF3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ILF3 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-NF90 vendorName Dr. Kevin White at University of Chicago term eGFP-NR4A1 tag NR4A1e type Antibody label NR4A1 (eGFP-NR4A1) antibodyDescription Goat polyclonal. Antibody Target: NR4A1 lab White orderUrl http://www.genes.uchicago.edu/white.html target eGFP-NR4A1 targetClass TFSS targetDescription NR4A1 targetId GeneCard:NR4A1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NR4A1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-NR4A1 vendorName Dr. Kevin White at University of Chicago term eGFP-SMARCA1 tag SMARCA1 type Antibody label SMARCA1 (eGFP-SMARCA1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor SMARCA1. Antibody Target: eGFP-SMARCA1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-SMARCA1 targetDescription This gene encodes a member of the SWI/SNF family of proteins. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. (provided by RefSeq) targetId GeneCard:SMARCA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCA1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-SMARCA1 vendorName Dr. Kevin White at University of Chicago term eGFP-SMARCA2 tag SMARCA2 type Antibody label SMARCA2 (eGFP-SMARCA2) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor SMARCA2. Antibody Target: eGFP-SMARCA2 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-SMARCA2 targetDescription The protein encoded by this gene is a member of the SWI/SNF family of proteins and is highly similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes (provided by RefSeq) targetId GeneCard:SMARCA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCA2 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-SMARCA2 vendorName Dr. Kevin White at University of Chicago term eGFP-STAT1 tag STAT1 type Antibody label STAT1 (eGFP-STAT1) antibodyDescription Goat polyclonal raised against e-GFP tagged transcription factor STAT1. Antibody Target: eGFP-STAT1 lab White lots 1 orderUrl http://www.genes.uchicago.edu/white.html target eGFP-STAT1 targetClass TFSS targetDescription The protein encoded by this gene is a member of the STAT protein family. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo-or heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein can be activated by various ligands including interferon-alpha, interferon-gamma, EGF, PDGF and IL6 (provided by RefSeq) targetId GeneCard:STAT1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=STAT1 validation Human_-_eGFP(Western_blot,Immunoprecipitation):human_validation_White.pdf vendorId eGFP-STAT1 vendorName Dr. Kevin White at University of Chicago term Egr-1 tag EGR1 type Antibody label EGR1 (sc-110) antibodyDescription Rabbit polyclonal, EGR-1 (588). Antibody Target: EGR1 lab Farnham,Myers orderUrl http://www.scbt.com/product.php?datasheet=110 target EGR1 targetDescription Egr-1, Egr-2, Egr-3 and Egr-4 are nuclear transcription factors belonging to the Egr C2H2-type zinc-finger protein family and containing three C2H2-type zinc fingers. As immediate early proteins, Egr transcription factors are rapidly induced by diverse extracellular stimuli. Egr proteins are subject to tight differential control through diverse mechanisms at several levels of regulation including transcriptional, translational and post-translational (including glyco- sylation, phosphorylation and redox) mechanisms and protein-protein inter- action. Egr-1 binds to the DNA sequence 5'-CGCCCCCGC-3' (EGR-site), there- by activating transcription of target genes whose products are required for mitogenisis and differentiation. Egr-2 binds specific DNA sites located in the promoter region of HoxA4. Egr-2 defects cause congenital hypomyelination neuropathy (also designated Charcot-Marie-tooth disease) and Dejerine- Sottas neuropathology (also designated hereditary motor and sensory neuro- pathy III. Egr-3 is involved in muscle spindle development and is expressed in T cells 20 minutes following activation. EGR-4 binds to the EGR consensus motif GCGTGGGCG, functions as a transcriptional repressor, and displays autoregulatory activities, downregulating its on gene promoter in a dose dependent manner. targetId GeneCard:EGR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EGR1 validation Human_-_Egr-1(sc-110)(Immunoblot):human_Egr-1_588_validation_Myers.pdf vendorId sc-110 vendorName Santa Cruz Biotechnology term ELAVL1 tag ELAVL1 type Antibody label ELAVL1 (sc-5261; 07-1735) antibodyDescription Mouse monoclonal vs HuR, Hel-N1, HuC and HuD of mus, rat, hum and Xenopus origin; 2) Rabbit polyclonal. Raised against synthetic peptide, amino acids 3-19 of HuR. Recommended for detection against ELAV1 in human and mouse origin. Antibody Target: ELAVL1 lab Tenenbaum lots B2508 orderUrl http://www.scbt.com/datasheet-5261-hur-3a2-antibody.html ; http://www.millipore.com/catalogue/item/07-1735 target ELAVL1 targetDescription (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Huantigen R) (Homo sapiens) targetId GeneCard:ELAVL1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ELAVL1 validation Human_-_ELAVL1_(sc-5261)(Western_blot,Immunoprecipitation):human_ELAVL1_SC-5261_validation_Tenenbaum.pdf Human_-_ELAVL1_(07-1735)(Western_blot,Immunoprecipitation):human_ELAVL1_07-1735_validation_Tenenbaum.pdf vendorId sc-5261; 07-1735 vendorName 1) Santa Cruz Biotechnology; 2) Millipore term ELF1_(SC-631) tag ELF1 type Antibody label ELF1 (sc-631) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1 lab Myers lots L2707 orderUrl http://www.scbt.com/datasheet-631-elf-1-c-20-antibody.html target ELF1 targetClass TFSS targetDescription This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq) targetId GeneCard:ELF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ELF1 validation Human_-_ELF1_(sc-631)(Western_blot,IP-MassSpec):human_ELF1_SC-631_validation_Myers.pdf vendorId sc-631 vendorName Santa Cruz Biotechnology term ELK1_(1277-1) tag ELK112771 type Antibody label ELK1 (1277-1) antibodyDescription Rabbit polyclonal affinity purified, a synthetic peptide corresponding to residues in C-terminus of human ELK-1 was used as immunogen. The antibody does not cross-react with other ETS family members. Antibody Target: ELK1 lab Snyder lots YG030402C orderUrl http://www.epitomics.com/products/product_info/194 target ELK1 targetDescription Elk-1 is a transcription factor that is part of the ets oncogene superfamily. Elk-1 forms a ternary complex with the serum response factors, SRE and SRF, mediating gene activity in response to serum and growth factors. Activation by several mitogen- activated protein kinases (Erk1 and Erk2) mediates the immediate early responses of the c-fos promoter to growth factors and other stimuli. targetId GeneCard:ELK1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ELK1 validation Human_-_ELK1(1277-1)(Immunoprecipitation,IP-MassSpec):human_ELK1_1277-1_validation_Snyder.pdf vendorId 1277-1 vendorName Epitomics term ELK4 tag ELK4 type Antibody label ELK4 (sc-13030) antibodyDescription Rabbit polyclonal IgG affinity purified. Antibody Target: ELK4 lab Farnham lots E0603 orderUrl http://datasheets.scbt.com/sc-13030.pdf target ELK4 targetClass TFSS targetDescription This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. (provided by RefSeq) targetId GeneCard:ELK4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ELK4 validation Human_-_ELK4(Western_blot,ChIP-seq):human_ELK4_validation_Farnham.pdf vendorId sc-13030 vendorName Santa Cruz Biotechnology term ERalpha_a tag ERAA type Antibody label ERalpha a (sc-543) antibodyDescription Rabbit polyclonal affinity purified antibody. Epitope is the C-terminus of human estrogen receptor alpha (ESR1). Antibody Target: ESR1 lab Ruan, Myers lots C2510 G1509 orderUrl http://www.scbt.com/datasheet-543-eralpha-hc-20-antibody.html target ESR1 targetClass TFSS targetDescription This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. Estrogen and its receptors are essential for sexual development and reproductive function, but also play a role in other tissues such as bone. Estrogen receptors are also involved in pathological processes including breast cancer, endometrial cancer, and osteoporosis. Alternative splicing results in several transcript variants, which differ in their 5-prime UTRs and use different promoters. (provided by RefSeq) targetId GeneCard:ESR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ESR1 validation Human_-_ERalpha_a(Immunoprecipitation-Western_blot,IP-MassSpec):human_ERalpha_a_validation_Myers.pdf vendorId sc-543 vendorName Santa Cruz Biotechnology term ERRA tag ERRA type Antibody label ESRRA (sc-66882) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of Ets-1 of human origin. Antibody Target: ESRRA lab Snyder lots A0809 orderUrl http://www.scbt.com/datasheet-66882-erralpha-h-80-antibody.html target ESRRA targetClass TFSS targetDescription Epitope corresponding to amino acids 81-160 mapping near the N-terminus of ERRalpha of human origin targetId GeneCard:ESRRA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ESRRA validation Human_-_ERRA(Western_blot,Motif_Enrichment):human_ERRA_validation_Snyder.pdf vendorId sc-66882 vendorName Santa Cruz Biotechnology term ESET_(166621) tag ESET166621 type Antibody label ESET/SETDB1 (sc-166621) antibodyDescription Mouse monoclonal IgG2b affinity purified, specific for an epitope mapping between amino acids 1195-1228 near the C-terminus of human ESET. Antibody Target: SETDB1 lab Bernstein lots H2009 orderUrl http://www.scbt.com/datasheet-166621-eset-a-1-antibody.html target SETDB1 targetDescription ERG-associated protein with SET domain (ESET), also designated Histone H3-K9 methyltransferase 4 or SET domain bifurcated 1, is a nuclear protein belonging to the histone-lysine methyltransferase family. ESET is a histone methyltransferase, methylating Lys-9 of histone H3 and mutations within the SETDB1 gene abolishes its methyltransferase activity. targetId GeneCard:SETDB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SETDB1 validation Human_-_ESET_(166621)(ChIP-seq,Western_blot):human_ESET_166621_validation_Bernstein.pdf vendorId sc-166621 vendorName Santa Cruz Biotechnology term ETS1 tag ETS1 type Antibody label ETS1 (sc-350) antibodyDescription Rabbit polyclonal IgG. Antibody Target: ETS1 lab Myers lots A1608 orderUrl http://www.scbt.com/datasheet-350-ets-1-c-20-antibody.html target ETS1 targetClass TFSS targetDescription ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis targetId GeneCard:ETS1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ETS1 validation Human_-_ETS1(Immunoprecipitation-Western_blot,IP-MassSpec):human_ETS1_validation_Myers.pdf Mouse_-_:missing vendorId sc-350 vendorName Santa Cruz Biotechnology term EZH2_(39875) tag EZH239875 type Antibody label EZH2 (39875) antibodyDescription Mouse monoclonal A/G affinity purified raised against a recombinant protein corresponding to amino acids 353-451 of human EZH2. Antibody Target: EZH2 lab Bernstein lots 27210001 orderUrl http://www.activemotif.com/catalog/details/39875/ezh2-antibody-mab-clone-ac22 target EZH2 targetDescription EZH2 (Enhancer of Zeste homolog 2, also designated Enx1 and SETDB1) is a human homolog of the Drosophila Polycomb-group protein Enhancer of Zeste protein. It contains a SET domain that catalyzes the methylation of histone H3 at lysine 27 (Histone H3 Lys27 monomethylated, dimethylated and trimethylated). Polycomb-group proteins repress gene expression by binding to chromatin and locally altering chromatin structure. EZH2, BMI-1 and Suz12 are present in the PRC2 and PRC3 protein complexes that function as mediators of epigenetic transcriptional silencing. EZH2 associates with the embryonic ectoderm development protein, the VAV1 oncoprotein, and the X-linked nuclear protein. EZH2 may play a role in the hematopoietic and central nervous systems. Deregulation of EZH2 is linked to a variety of cancers. targetId GeneCard:EZH2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EZH2 validation Human_-_EZH2_(39875)(Western_blot,ChIP-seq):human_EZH2_validation_Bernstein.pdf vendorId 39875 vendorName Active Motif term FLI1_(sc-356) tag FLI1SC356 type Antibody label FLI1 (sc-356) antibodyDescription Rabbit polyclonal. FLI1 (C-19) is an affinity purified antibody raised against a peptide mapping at the C-terminus of FLI1 of mouse origin. Antibody Target: FLI1 lab Hardison lots E1211 orderUrl http://www.scbt.com/datasheet-356-fli-1-c-19-antibody.html target FLI1 targetDescription Fli1 (Friend leukemia virus integration 1) is a member of a family of genes identified on the basis of their homology to the v-Ets oncogene isolated from the E26 erythoblastosis virus. targetId GeneCard:FLI1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FLI1 validation Mouse_-_FLI1_(sc-356)(Western_blot,Correlation):mouse_FLI1_sc-356_validation_Hardison.pdf vendorId sc-356 vendorName Santa Cruz Biotechnology term FOSL1_(SC-183) tag FOSL1 type Antibody label FOSL1 (sc-183) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1 lab Myers lots I0809 orderUrl http://www.scbt.com/datasheet-183-fra-1-n-17-antibody.html target FOSL1 targetDescription The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq) targetId GeneCard:FOSL1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOSL1 validation Human_-_FOSL1_(sc-183)(Western_blot,IP-MassSpec):human_FOSL1-SC183_validation_Myers.pdf vendorId sc-183 vendorName Santa Cruz Biotechnology term FOSL1_(sc-605) tag FOSL1SC605 type Antibody label FOSL1 (sc-605) antibodyDescription Rabbit polyclonal antibody raised against the N-terminus of FOSL1 of rat origin. Antibody Target: FOSL1 lab Wold lots G0109 orderUrl http://www.scbt.com/datasheet-605-fra-1-r-20-antibody.html target FOSL1 targetDescription The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq) targetId GeneCard:FOSL1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOSL1 validation Mouse_-_:missing vendorId sc-605 vendorName Santa Cruz Biotechnology term FOSL2 tag FOSL2 type Antibody label FOSL2 (sc-604) antibodyDescription Rabbit polyclonal. Fra-2(Q-20) is an affinity purified raised against the N-terminus of Fra-2 of human origin. Antibody Target: FOSL2 lab Myers orderUrl http://www.scbt.com/datasheet-604-fra-2-q-20-antibody.html target FOSL2 targetDescription The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. targetId GeneCard:FOSL2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOSL2 validation Human_-_FOSL2(Immunoblot):human_FOSL2_Q-20_validation_Myers.pdf vendorId sc-604 vendorName Santa Cruz Biotechnology term FOXA1_(SC-6553) tag FOXA1b type Antibody label FOXA1 (sc-6553) antibodyDescription Goat polyclonal IgG, epitope mapping at the C-terminus of FOXA1 of human origin. Antibody Target: FOXA1 lab Myers lots H1209 orderUrl http://www.scbt.com/datasheet-6553-hnf-3alpha-beta-c-20-antibody.html target FOXA1 targetDescription This gene encodes a member of the forehead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver (RefSeq). targetId GeneCard:FOXA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXA1 validation Human_-_FOXA1(Immunoprecipitation-Western_blot,IP-MassSpec):human_FOXA1_SC-6553_validation_Myers.pdf vendorId sc-6553 vendorName Santa Cruz Biotechnology term FOXA1_(SC-101058) tag FOXA1 type Antibody label FOXA1 (sc-101058) antibodyDescription Mouse monoclonal IgG, raised against recombinant HNF-3a of human origin. Antibody Target: FOXA1 lab Myers lots A2706 orderUrl http://www.scbt.com/datasheet-101058-hnf-3alpha-q-6-antibody.html target FOXA1 targetDescription This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. (provided by RefSeq) targetId GeneCard:FOXA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXA1 validation Human_-_FOXA1_(sc-101058)(Immunoprecipitation-Western_blot,IP-MassSpec):human_FOXA1_SC-101058_validation_Myers.pdf vendorId sc-101058 vendorName Santa Cruz Biotechnology term FOXA2_(SC-6554) tag FOXA2 type Antibody label FOXA2 (sc-6554) antibodyDescription Goat polyclonal IgG, epitope mapping at the N-terminus of FOXA2 of human origin. Antibody Target: FOXA2 lab Myers lots L1409 orderUrl http://www.scbt.com/datasheet-6554-hnf-3beta-m-20-antibody.html target FOXA2 targetDescription The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II. (provided by RefSeq) targetId GeneCard:FOXA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXA2 validation Human_-_:missing vendorId sc-6554 vendorName Santa Cruz Biotechnology term FOXM1_(SC-502) tag FOXM1SC502 type Antibody label FOXM1 (sc-502) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of FOXM1 of human origin. Antibody Target: FOXM1 lab Myers lots C1909 orderUrl http://datasheets.scbt.com/sc-502.pdf target FOXM1 targetDescription The protein encoded by this gene is a transcriptional activator involved in cell proliferation. The encoded protein is phosphorylated in M phase and regulates the expression of several cell cycle genes, such as cyclin B1 and cyclin D1. Several transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Jul 2011) targetId GeneCard:FOXM1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXM1 validation Human_-_FOXM1_(sc-502)(Western_blot,IP-MassSpec):human_FOXM1_sc-502_validation_Myers.pdf vendorId sc-502 vendorName Santa Cruz Biotechnology term FOXP2 tag FOXP2 type Antibody label FOXP2 (ab16046) antibodyDescription Rabbit polyclonal, raised against C-terminal 127 amino acids of FOXP2 of human origin. Antibody Target: FOXP2 lab Myers lots AB-2B orderUrl http://www.abcam.com/index.html?datasheet=16046 target FOXP2 targetDescription This gene encodes a member of the forkhead/winged-helix (FOX) family of transcription factors. Transcriptional repressor, involved in the development of speech targetId GeneCard:FOXP2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXP2 validation Human_-_FOXP2(Western_blot,siRNA):human_FOXP2_validation_Myers.pdf vendorId ab16046 vendorName abcam term GABP tag GABP type Antibody label GABPA (sc-28312) antibodyDescription Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP lab Myers lots F1804 orderUrl http://www.scbt.com/product.php?datasheet=28312 target GABPA targetDescription The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence. targetId GeneCard:GABPA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GABPA validation Human_-_GABP(Immunoprecipitation-Western_blot,IP-MassSpec):human_GABP_validation_Myers.pdf vendorId sc-28312 vendorName Santa Cruz Biotechnology term GATA-1 tag GATA1 type Antibody label GATA1 antibodyDescription Rabbit polyclonal antibody generated using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1 lab Farnham orderUrl http://stemcells.wisc.edu/node/101 target GATA1 targetDescription GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells. targetId GeneCard:GATA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA1 validation Human_-_GATA-1_(Western_blot,ChIP-seq):human_GATA-1_validation_Farnham.pdf Mouse_-_:missing vendorId GATA-1 vendorName Dr. E.H. Bresnick at UW Madison term GATA1_(SC-265) tag GATA1a type Antibody label GATA1 (sc-265) antibodyDescription Rat monoclonal antibody raised against mouse recombinant GATA1; recommended for detection of GATA1 of mouse, rat and human origin. Antibody Target: GATA1 lab Hardison orderUrl http://www.scbt.com/datasheet-265-gata-1-n6-antibody.html target GATA1 targetDescription GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes. targetId GeneCard:GATA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA1 validation Mouse_-_GATA1(Western_blot):mouse_GATA1_validation_Hardison.pdf vendorId sc-265 vendorName Santa Cruz Biotechnology term GATA1_(SC-266) tag GATA1b type Antibody label GATA1 (sc-266) antibodyDescription Rat monoclonal raised against bacterially expressed murine GATA-1. Antibody Target: GATA1 lab Snyder lots B2510 orderUrl http://www.scbt.com/datasheet-266-gata-1-n1-antibody.html target GATA1 targetDescription GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes. targetId GeneCard:GATA1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA1 validation Human_-_GATA1_(sc-266)(Immunoprecipitation,Motif_Enrichment):human_GATA_validation_Snyder.pdf Mouse_-_GATA1(sc-266)(Immunoprecipitation):mouse_GATA1-SC266_validation_Snyder.pdf Mouse_-_GATA1_(sc-266)(Immunoprecipitation,Motif_Enrichment):mouse_GATA1_validation_Snyder.pdf vendorId sc-266 vendorName Santa Cruz Biotechnology term GATA-2 tag GATA2 type Antibody label GATA2 antibodyDescription Rabbit polyclonal. Antibody Target: GATA2 lab Farnham orderUrl http://stemcells.wisc.edu/node/101 target GATA2 targetClass TFSS targetDescription GATA binding protein 2 targetId GeneCard:GATA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA2 validation Human_-_GATA-2(Western_blot,siRNA):human_GATA-2_validation_Farnham.pdf vendorId GATA-2 vendorName Dr. E.H. Bresnick at UW Madison term GATA2_(SC-267) tag GATA2b type Antibody label GATA2 (sc-267) antibodyDescription Mouse monoclonal IgG. Antibody Target: GATA2 lab Myers lots E2708 orderUrl http://www.scbt.com/datasheet-267-gata-2-cg2-96-antibody.html target GATA2 targetClass TFSS targetDescription This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded program plays an essential role in regulation transcription of genes involved in the development and proliferation of hematopoietic and endocrine cell lineages (RefSeq). targetId GeneCard:GATA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA2 validation Human_-_GATA2_(sc-267)(Immunoprecipitation-Western_blot,IP-MassSpec):human_GATA2_SC-267_validation_Myers.pdf vendorId sc-267 vendorName Santa Cruz Biotechnology term GATA2_(SC-9008) tag GATA2SC9008 type Antibody label GATA2 (sc-9008) antibodyDescription Rabbit polyclonal antibody raised against amino acids 120-235 of GATA-2 of human origin. Antibody Target: GATA2 lab Hardison lots J2108 orderUrl http://www.scbt.com/datasheet-9008-gata-2-h-116-antibody.html target GATA2 targetClass TFSS targetDescription The GATA family of transcription factors share a conserved zinc finger DNA-binding domain and are capable of binding the WGATAR consensus sequence. GATA1 is erythroid-specific and is essential for normal erythropeisis. By comparison, GATA2 is expressed at high levels in hematopoeitic progenitors, including early erythroid cells, but is strong repressed during erythroblast differentiaion. targetId GeneCard:GATA2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA2 validation Mouse_-_GATA2_(sc-9008)(Western_blot):mouse_GATA2_SC-9008_validation_Hardison.pdf vendorId sc-9008 vendorName Santa Cruz Biotechnology term GATA3_(SC-268) tag GATA3 type Antibody label GATA3 (sc-268) antibodyDescription Mouse monoclonal IgG raised against human recombinant GATA-3. Antibody Target: GATA3 lab Farnham lots G0910 orderUrl http://www.scbt.com/datasheet-268-gata-3-hg3-31-antibody.html target GATA3 targetDescription This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq). targetId GeneCard:GATA3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA3 validation Human_-_GATA3_SC-268(Western_blot,ChIP-seq):human_GATA3_SC-268_validation_Farnham.pdf vendorId sc-268 vendorName Santa Cruz Biotechnology term GATA3_(SC-269) tag GATA3SC269 type Antibody label GATA3 (sc-269) antibodyDescription Mouse monoclonal IgG affnity purified, raised against human recombinant GATA-3 (amino acids 1-264). Antibody Target: GATA3 lab Farnham lots A1404 orderUrl http://www.scbt.com/datasheet-269-gata-3-hg3-35-antibody.html target GATA3 targetDescription This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq) targetId GeneCard:GATA3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GATA3 validation Human_-_GATA3_SC-269_(siRNA,ChIP-seq):human_GATA3_SC-269_validation_Farnham.pdf vendorId sc-269 vendorName Santa Cruz Biotechnology term GCN5 tag GCN5 type Antibody label GCN5 antibodyDescription Rabbit polyclonal anti-GCN5 antibody (2676), Immunogen: synthetic peptide coupled to Ovalbumin (sequence-MAEPSQAPTPAPAAQPRPLC). Antibody Target: KAT2A lab Struhl orderUrl http://www.igbmc.fr target KAT2A targetClass HISase targetDescription KAT2A, or GCN5, is a histone acetyltransferase (HAT) that functions primarily as a transcriptional activator. Acetylation of histones gives a specific tag for epigenetic transcription activation. In case of HIV-1 infection, it is recruited by the viral protein Tat. Regulates Tat's transactivating activity and may help inducing chromatin remodeling of proviral genes. Component of the SAGA and ATAC complexes, complexes with histone acetyltransferase activities on histones H3 and H4 targetId GeneCard:KAT2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KAT2A validation Human_-_:missing vendorId GCN5 (2676) vendorName Dr. Lazlo Tora at Institut de Gènètique et de Biologie Molèculaire et Cellulaire term GR tag GR type Antibody label GR (sc-1003) antibodyDescription Rabbit polyclonal. Anti-GR. Antibody Target: NR3C1 lab Myers lots A2508 E1908 orderUrl http://www.scbt.com/product.php?datasheet=1003 target NR3C1 targetClass TFSS targetDescription Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) targetId GeneCard:NR3C1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NR3C1 validation Human_-_GR(Immunoblot):human_GR_M-20_validation_Myers.pdf vendorId sc-1003 vendorName Santa Cruz Biotechnology term GRp20 tag GRP20 type Antibody label GRp20 (sc-1002) antibodyDescription Rabbit polyclonal IgG affinity purified. Antibody Target: GRp20 lab Snyder orderUrl http://www.scbt.com/datasheet-1002-gr-p-20-antibody.html target GRp20 targetDescription Epitope mapping at the C-terminus of GR alpha of human origin targetId GeneCard:NR3C1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NR3C1 validation Human_-_GRp20_(sc-1002)(Western_blot,IP-MassSpec):human_GRP20_sc-1002__validation_Snyder.pdf vendorId sc-1002 vendorName Santa Cruz Biotechnology term GTF2B tag GTF2B type Antibody label GTF2B (sc-225) antibodyDescription Rabbit polyclonal A/G affinity purified. Raised against an epitope mapping to C-terminus of human TFIIB. Recommended for detection of TFIIB p33 of mouse, rabbit and human origin. Antibody Target: GTF2B lab Struhl lots J1905 orderUrl http://www.scbt.com/datasheet-225-tfiib-c-18-antibody.html target GTF2B targetClass TFNS targetDescription DNA- binding general transcription factor targetId GeneCard:GTF2B targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GTF2B validation Human_-_TFIIB_(sc-225)(Western_blot,ChIP-seq):human_TFIIB_sc-225X_validation_Struhl.pdf vendorId sc-225 vendorName Santa Cruz Biotechnology term GTF2F1_(AB28179) tag GTF2F1 type Antibody label GTF2F1 (ab28179) antibodyDescription Rabbit polyclonal to TFIIF - Recombinant full length protein - RAP 74 subunit of TF11F. Antibody Target: GTF2F1 lab Snyder orderUrl http://www.abcam.com/TFIIF-antibody-ChIP-Grade-ab28179.html target GTF2F1 targetClass TFNS targetDescription RNA polymerase II transcription factor TFIIF is a heterodimer with 2 subunits: one, referred to as RAP74. TFIIF appears to assist TFIIB in recruiting RNA polymerase II into a preinitiation complex. It also affects RNA transcription by suppressing transient pausing of the polymerase at locations on the DNA template. targetId GeneCard:GTF2F1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GTF2F1 validation Human_-_GTF2F1_(AB28179)(Western_blot,Immunoprecipitation):human_GTF2F1_AB28179_validation_Snyder.pdf vendorId ab28179 vendorName abcam term H2A.Z tag H2AZ type Antibody label H2AZ (07-594) antibodyDescription Rabbit polyclonal antibody A/G affinity purified, raised against a peptide corresponding to the C-terminus of H2A.Z. Antibody Target: H2AFZ lab Bernstein lots DAM1540736 orderUrl http://www.millipore.com/catalogue/item/07-594 target H2AFZ targetDescription H2A.Z (H2AFZ) is a sequence variant of Histone H2A. targetId GeneCard:H2AFZ targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=H2AFZ validation Human_-_H2A.Z_(07-594)(Western_blot,ChIP-seq):human_H2AZ_07-594_validation_Bernstein.pdf vendorId 07-594 vendorName Millipore term H3ac_(06-599) tag H3AC06599 type Antibody label H3ac (06-599) antibodyDescription Rabbit polyclonal antibody raised against a KLH-conjugated peptide corresponding to amino acids 1-20 of Tetrahymena histone H3 (ARTKQTAR[K*]STGG[K*]APRKQLC) where K* is acetylated. Antibody Target: H3ac lab Wold orderUrl http://www.millipore.com/catalogue/item/06-599 target H3ac targetDescription missing targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_:missing vendorId 06-599 vendorName Millipore term H3K4me1 tag H3K04ME1 type Antibody label H3K4me1 (ab8895) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: H3K4me1 lab Bernstein, Ren, Hardison lots 383111 720417 orderUrl http://www.abcam.com/index.html?datasheet=8895 target H3K4me1 targetDescription Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K4me1(ab8895)(Dot_blot):human_H3K4me1_ab8895_validation_Bernstein.pdf Mouse_-_H3K4me1(ab8895)(Dot_blot,Western_blot):mouse_H3K4me1_ab8895_validation_Ren.pdf Mouse_-_H3K4me1(ab8895)(Dot_blot):mouse_H3K4me1_ab8895_validation_Hardison.pdf vendorId ab8895 vendorName abcam term H3K4me1_(pAb-037-050) tag H3K04ME1b type Antibody label H3K4me1 (pAb-037-050) antibodyDescription Rabbit polyclonal affinity purified antibody raised against histone H3 containing the monomethylated lysine 4 (H3K4me1), using a KLH-conjugated synthetic peptide. Antibody Target: H3K4me1 lab Farnham lots A399-002341P orderUrl http://www.diagenode.com/en/catalog/antibodies-3/histone-h3-and-modified-h3-27/product/h3k4me1-polyclonal-antibody-37 target H3K4me1 targetDescription Histones are the main constituents of the protein part of chromosomes of eukaryotic cells. They are rich in the amino acids arginine and lysine and have been greatly conserved during evolution.Histone tails undergo numerous posttranslational modifications. This antibodies recognizes histone H3 monomethylated on lysine 4. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K4me1_(pAb-037-050)(Western_blot,Dot_blot):human_H3K4me1_pAb-037-050_validation_Farnham.pdf vendorId pAb-037-050 vendorName Diagenode term H3K4me2 tag H3K04ME2 type Antibody label H3K4me2 (ab7766) antibodyDescription Rabbit polyclonal. Antibody Target: H3K4me2 lab Bernstein lots 56293 orderUrl http://www.abcam.com/index.html?datasheet=7766 target H3K4me2 targetDescription Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K4me2(Dot_blot):human_H3K4me2_validation_Bernstein.pdf vendorId ab7766 vendorName abcam term H3K4me2_(ab32356) tag AB32356 type Antibody label H3K4me2 (ab32356) antibodyDescription Rabbit monoclonal [Y47] to Histone H3 (di methyl K4) - ChIP Grade. Antibody Target: H3K4me2 lab Wold, Ren lots 870402 577702 orderUrl http://www.abcam.com/Histone-H3-di-methyl-K4-antibody-Y47-ChIP-Grade-ab32356.html target H3K4me2 targetDescription Histone H3 dimethylated on Lysine 4. Marks promoters and enhancers. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_H3K4me2_(ab32356)(Dot_blot,Western_blot):mouse_H3K4me2_ab32356_validation_Ren.pdf vendorId ab32356 vendorName abcam term H3K4me3 tag H3K04ME3 type Antibody label H3K4me3 (07-473) antibodyDescription Rabbit polyclonal. Antibody Target: H3K4me3 lab Bernstein, Hardison lots 498616 331024(ab8580) R0903B0054(07-473) orderUrl http://www.abcam.com/index.html?datasheet=8580; http://www.millipore.com/catalogue/item/07-473 target H3K4me3 targetDescription Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K4me3(Dot_blot):human_H3K4me3_validation_Bernstein.pdf Mouse_-_H3K4me3_(ab8580)(Dot_blot):mouse_H3K4me3_ab8580_validation_Hardison.pdf Mouse_-_H3K4me3_(07-473)(Dot_blot):mouse_H3K4me3_07-473_validation_Hardison.pdf vendorId ab8580; 07-473 vendorName 1)abcam; 2)Millipore term H3K4me3_(04-745) tag H3K4ME304745 type Antibody label H3K4me3 (04-745) antibodyDescription Rabbit monoclonal anti-trimethyl-Histone H3 (Lys4) Antibody, clone MC315 lab Ren lots NG1643014 orderUrl http://www.millipore.com/catalogue/item/04-745 target H3K4me3 targetDescription Detect only histone H3 containing trimethyl-lysine 4 targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_H3K4me3_(04-745)(Dot_blot,Western_blot):mouse_H3K4me3_04-745_validation_Ren.pdf vendorId 04-745 vendorName Millipore term H3K4me3B tag H3K04ME3b type Antibody label H3K4me3 (9751S) antibodyDescription Rabbit monoclonal antibody. Antibody Target: H3K4me3 lab Farnham lots 1 2 orderUrl http://www.cellsignal.com/products/9751.html target H3K4me3 targetDescription Histone H3 (tri-methyl K4) marks promoters in chromatin regions targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K4me3B(Western_blot,Competitor_peptides):human_H3K4me3B_validation_Farnham.pdf vendorId 9751S vendorName Cell Signaling Technology term H3K9ac tag H3K09AC type Antibody label H3K9ac (ab4441) antibodyDescription Rabbit polyclonal A/G affinity purified. Antibody Target: H3K9ac lab Bernstein lots 455103 550799 orderUrl http://www.abcam.com/index.html?datasheet=4441 target H3K9ac targetDescription Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K9ac_(ab4441)(Western_blot,ChIP-seq):human_H3K9ac_ab4441_validation_Bernstein.pdf vendorId ab4441 vendorName abcam term H3K9Ac_(39137) tag H3K9AC39137 type Antibody antibodyDescription Rabbit polyclonal to Histone H3 K9 acetylation lab Ren lots 1008001 orderUrl http://www.activemotif.com/catalog/details/39137/histone-h3-acetyl-lys9-antibody-pab target H3K9ac targetDescription Detect only Histone H3 K9 acetylation targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_H3K9Ac_(39137)(Dot_blot,Western_blot):mouse_H3K9Ac_39137_validation_Ren.pdf vendorId 39137 vendorName Active Motif term H3K9Ac_(9649) tag H3K09ACc type Antibody label H3K9ac (9649) antibodyDescription Rabbit monoclonal antibody corrresponds to the amino terminus of acetyl-histone H3 (Lys9), this antibody does not cross-react with other acetylated histones. Antibody Target: H3K9ac lab Farnham lots 1 orderUrl http://www.cellsignal.com/products/9649.html target H3K9ac targetDescription H3K9ac, acetyl-histone H3 (Lys9) targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K9Ac_(9649)(Western_blot,Dot_blot):human_H3K9Ac_9649_validation_Farnham.pdf vendorId 9649 vendorName Cell Signaling Technology term H3K9acB tag H3K09ACb type Antibody label H3K9ac (07-352) antibodyDescription Rabbit polyclonal. Antibody Target: H3K9ac lab Farnham orderUrl http://www.millipore.com/catalogue/item/07-352 target H3K9ac targetDescription Histone H3 (acetyl K9) marks promoters in chromatin regions targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K9Ac_(07-352)(Western_blot,ChIP-seq):human_H3K9Ac_07-352_validation_Farnham.pdf vendorId 07-352 vendorName Millipore term H3K9me1 tag H3K09ME1 type Antibody label H3K9me1 (ab8896) antibodyDescription Rabbit polyclonal. Antibody Target: H3K9me1 deprecated This was not found to be an effective antibody. lab Bernstein lots 104560 orderUrl http://www.abcam.com/index.html?datasheet=8896 target H3K9me1 targetDescription Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_:missing vendorId ab8896 vendorName abcam term H3K9me3 tag H3K09ME3 type Antibody label H3K9me3 (ab8898) antibodyDescription Rabbit polyclonal affinity purified, ChIP grade. Antibody Target: H3K9me3 lab Farnham, Ren, Hardison, Bernstein lots 484088 699671 943257 orderUrl http://www.abcam.com/index.html?datasheet=8898 target H3K9me3 targetDescription Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K9me3(Dot_blot):human_H3K9me3_validation_Bernstein.pdf Mouse_-_H3K9me3_(ab8898)(Dot_blot,Western_blot):mouse_H3K9me3_ab8898_validation_Ren.pdf Mouse_-_H3K9me3_(ab8898)(Dot_blot):mouse_H3K9me3_ab8898_validation_Hardison.pdf vendorId ab8898 vendorName abcam term H3K9me3_(9754) tag H3K09ME3b type Antibody label H3K9me3 (9754) antibodyDescription Rabbit polyclonal antibody was produced by immunizing animals with a synthetic peptide corresponding to the amino terminus of histone H3 in which Lys9 is tri-methylated. Antibody was purified by protein A and peptide affinity chromatography. Tri-Methyl-Histone H3 (Lys9) Antibody detects endogenous levels of histone H3 only when tri-methylated on Lys9. The antibody does not cross-react with non-methylated, mono-methylated, or di-methylated Lys9. In addition, the antibody does not cross-react with non-methylated, mono-methylated, di-methylated or tri-methylated histone H3 Lys4, Lys27, Lys36 or histone H4 Lys20. Antibody Target: H3K9me3 lab Farnham lots 1 orderUrl http://www.cellsignal.com/products/9754.html target H3K9me3 targetDescription histone cluster 2, H3c, HIST2H3C targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K9me3_(9754)(Western_blot,Peptide_ELISA):human_H3K9me3_9754_validation_Farnham.pdf vendorId 9754 vendorName Cell Signaling Technology term H3K27ac tag H3K27AC type Antibody label H3K27ac (ab4729) antibodyDescription Rabbit polyclonal. Antibody Target: H3K27ac lab Bernstein lots 31456 orderUrl http://www.abcam.com/index.html?datasheet=4729 target H3K27ac targetDescription Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K27ac(Dot_blot):human_H3K27ac_validation_Bernstein.pdf vendorId ab4729 vendorName abcam term H3K27Ac_(39133) tag H3K27AC39133 type Antibody antibodyDescription Rabbit polyclonal to Histone H3 K27 acetylation lab Ren lots 19208002 orderUrl http://www.activemotif.com/catalog/details/39133/histone-h3-acetyl-lys27-antibody-pab target H3K27ac targetDescription Specific for detecting Histone H3 K27 acetylation only targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_H3K27Ac_(39133)(Dot_blot,Western_blot):human_H3K27Ac_39133_validation_Ren.pdf vendorId 39133 vendorName Active Motif term H3K27me3 tag H3K27ME3 type Antibody label H3K27me3 (07-449) antibodyDescription Rabbit polyclonal. Antibody Target: H3K27me3 lab Bernstein, Hardison lots DAM1387952 orderUrl http://www.millipore.com/catalogue/item/07-449 target H3K27me3 targetDescription Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K27me3(Dot_blot):human_H3K27me3_validation_Bernstein.pdf Mouse_-_H3K27me3_(07-449)(Dot_blot):human_H3K27me3_validation_Hardison.pdf vendorId 07-449 vendorName Millipore term H3K27me3_(39155) tag H3K27ME339155 type Antibody antibodyDescription Rabbit polyclonal to Histone H3 K27 trimethylation lab Ren lots 30508004 orderUrl http://www.activemotif.com/catalog/details/39155 target H3K27me3 targetDescription This antibody only detects Histone H3 trimethylated on Lysine 27 targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_H3K27me3_(39155)(Dot_blot,Western_blot):mouse_H3K27me3_39155_validation_Ren.pdf vendorId 39155 vendorName Active Motif term H3K27me3B tag H3K27ME3b type Antibody label H3K27me3 (9733S) antibodyDescription Rabbit monoclonal. Antibody Target: H3K27me3 lab Farnham lots 1 orderUrl http://www.cellsignal.com/products/9733.html target H3K27me3 targetDescription Histone H3 (tri-methyl K27) marks repressed chromatin regions targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K27me3B(Western_blot,Peptide_ELISA):human_H3K27me3B_validation_Farnham.pdf vendorId 9733S vendorName Cell Signaling Technology term H3K36me3 tag H3K36ME3 type Antibody label H3K36me3 (ab9050) antibodyDescription Rabbit polyclonal. Antibody Target: H3K36me3 lab Bernstein, Ren, Hardison lots 136353 707946 499302 947454 826245 orderUrl http://www.abcam.com/index.html?datasheet=9050 target H3K36me3 targetDescription Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts. targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K36me3(ab9050)(Dot_blot):human_H3K36me3_ab9050_validation_Bernstein.pdf Mouse_-_H3K36me3_(ab9050)(Dot_blot,Western_blot):mouse_H3K36me3_ab9050_validation_Ren.pdf Mouse_-_H3K36me3_(ab9050)(Dot_blot):mouse_H3K36me3_ab9050_validation_Hardison.pdf vendorId ab9050 vendorName abcam term H3K36me3B tag H3K36ME3b type Antibody label H3K36me3 (9763S) antibodyDescription Rabbit polyclonal. Antibody Target: H3K36me3 lab Farnham orderUrl http://www.cellsignal.com/products/9763.html target H3K36me3 targetDescription Histone H3 (tri-methyl K36) marks actively transcribed chromatin regions targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K36me3B(Western_blot,Peptide_ELISA):human_H3K36me3B_validation_Farnham.pdf vendorId 9763S vendorName Cell Signaling Technology term H3K79me2 tag H3K79ME2 type Antibody label H3K79me2 (39143) antibodyDescription Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2 lab Bernstein, Ren lots 177/0100800 orderUrl http://www.activemotif.com/catalog/details/39143/histone-h3-dimethyl-lys79-antibody-pab.html target H3K79me2 targetDescription H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3). targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Human_-_H3K79me2(Dot_blot):human_H3K79me2_validation_Bernstein.pdf Mouse_-_H3K79me2_(39143)(Dot_blot,Western_blot):human_H3K79me2_39143_validation_Ren.pdf vendorId 39143 vendorName Active Motif term H3K79me2_(ab3594) tag AB3594 type Antibody label H3K79me2 (ab3594) antibodyDescription Rabbit polyclonal. Antibody Target: H3K79me2 lab Wold lots 836403 orderUrl http://www.abcam.com/Histone-H3-di-methyl-K79-antibody-ChIP-Grade-ab3594.html target H3K79me2 targetDescription H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3) targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_:missing vendorId ab3594 vendorName abcam term H3K79me3_(ab2621) tag AB2621 type Antibody label H3K79me3 (ab2621) antibodyDescription Rabbit polyclonal. Antibody Target: H3K79me3 lab Wold lots 805949 orderUrl http://www.abcam.com/Histone-H3-tri-methyl-K79-antibody-ChIP-Grade-ab2621.html target H3K79me3 targetDescription Associated with the gene body of actively transcribed genes targetId GeneCard:HIST2H3C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H3C validation Mouse_-_:missing vendorId ab2621 vendorName abcam term H4K20me1 tag H4K20ME1 type Antibody label H4K20me1 (ab9051) antibodyDescription Rabbit polyclonal. Antibody Target: H4K20me1 lab Bernstein lots 104513 519198 orderUrl http://www.abcam.com/index.html?datasheet=9051 target H4K20me1 targetDescription Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair. targetId GeneCard:HIST2H4A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HIST2H4A validation Human_-_H4K20me1(ab9051)(Dot_blot):human_H4K20me1_ab9051_validation_Bernstein.pdf vendorId ab9051 vendorName abcam term HA-E2F1 tag HAE2F1 type Antibody label HA-E2F1 (MMS-101P) antibodyDescription Mouse monoclonal antibody HA.11 clone 16B12 was raised against the twelve amino acid peptide CYPYDVPDYASL. This second-generation HA antibody is an excellent substitute for the 12CA5 monoclonal antibody. The HA.11 antibody recognizes the influenza hemagglutinin epitope (YPYDVPDYA) which has been used extensively as a general epitope tag in expression vectors. The extreme specificity of the antibody allows unambiguous identification and quantitative analysis of the tagged protein. The HA.11 antibody recognizes HA epitopes located in the middle of protein sequences as well as at the N- or C-terminus. Antibody Target: HA-E2F1 lab Farnham orderUrl https://store.crpinc.com/datasheet.aspx?catalogno=MMS-101P target HA-E2F1 targetDescription The HA-E2F1 protein is a derivative of E2F1, a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionary conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This version of E2F1 includes an N terminal HA tag and a modified ER ligand binding domain to allow regulated translocation to the nucleus. targetId GeneCard:E2F1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=E2F1 validation Human_-_HA-E2F1(Immunoprecipitation-Western_blot,ChIP-seq):human_E2F1_HA-E2F1_validation_Farnham.pdf vendorId MMS-101P vendorName Covance term HCFC1_(NB100-68209) tag HCFC1NB10068209 type Antibody antibodyDescription Rabbit polyclonal antibody against residue 1700 and 1750 of human host cell factor C1 lab Snyder lots A1 orderUrl http://www.novusbio.com/HCFC1-Antibody_NB100-68209.html target HCFC1 targetDescription The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein). targetId GeneCard:HCFC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HCFC1 validation Human_-_HCFC1_(NB100-68209)(Immunoprecipitation,IP-MassSpec):human_HCFC1_NB100-68209_validation_Snyder.pdf Mouse_-_HCFC1_(NB100-68209)(Immunoprecipitation,IP-MassSpec):mouse_HCFC1_validation_Snyder.pdf vendorId NB100-68209 vendorName Novus Biologicals term HDAC1_(SC-6298) tag HDAC1SC6298 type Antibody label HDAC1 (sc-6298) antibodyDescription Goat polyclonal IgG affinity purified, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1 lab Bernstein lots H0509 orderUrl http://www.scbt.com/datasheet-6298-hdac1-c-19-antibody.html target HDAC1 targetDescription Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203. targetId GeneCard:HDAC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HDAC1 validation Human_-_HDAC1_(sc-6298)(Western_blot,ChIP-seq):human_HDAC1_sc-6298_validation_Bernstein.pdf vendorId sc-6298 vendorName Santa Cruz Biotechnology term HDAC2_(A300-705A) tag HDAC2A300705A type Antibody label HDAC2 (A300-705A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2 lab Bernstein lots A300-705A-1 orderUrl http://www.bethyl.com/product/A300-705A target HDAC2 targetDescription Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1. targetId GeneCard:HDAC2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HDAC2 validation Human_-_HDAC2_(A300-705A)(Western_blot,ChIP-seq):human_HDAC2_validation_Bernstein.pdf vendorId A300-705A vendorName Bethyl Laboratories term HDAC2_(SC-6296) tag HDAC2SC6296 type Antibody label HDAC2 (sc-6296) antibodyDescription Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin. Antibody Target: HDAC2 lab Myers lots G0307 orderUrl http://www.scbt.com/datasheet-6296-hdac2-c-19-antibody.html target HDAC2 targetDescription This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq) targetId GeneCard:HDAC2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HDAC2 validation Human_-_HDAC2_(sc-6296)(Immunoprecipitation-Western_blot,IP-MassSpec):human_HDAC2_SC-6296_validation_Myers.pdf vendorId sc-6296 vendorName Santa Cruz Biotechnology term HDAC6_(A301-341A) tag HDAC6A301341A type Antibody label HDAC6 (A301-341A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC6 lab Bernstein lots A301-341A-1 orderUrl http://www.bethyl.com/product/A301-341A/HDAC6_Antibody target HDAC6 targetDescription Histone deacetylase 6 (HDAC6) is a class II histone deacetylase that catalyzes the deacetylation of lysine residues on the N-terminus of core histones. HDAC6 has also been identified as a cytoplasmic deacetylase that acts on tubulin and HSP90 to influence cell motility. Recently HDAC6 has been found to be involved in the stress response as a component of cytoplasmic stress granules. targetId GeneCard:HDAC6 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HDAC6 validation Human_-_HDAC6_(A301-341A)(Western_blot,ChIP-String):human_Hdac6_A301-341A_validation_Bernstein.pdf vendorId A301-341A vendorName Bethyl Laboratories term HEY1 tag HEY1 type Antibody label HEY1 (sc-16424) antibodyDescription Goat polyclonal IgG HRT1 (C-20) Epitope mapping near the C-terminus of HRT1 of human origin. Antibody Target: HEY1 deprecated data withdrawn lab Myers orderUrl http://www.scbt.com/datasheet-16424-hrt1-c-20-antibody.html target HEY1 targetClass TFSS targetDescription This gene encodes a nuclear protein belonging to the hairy and enhancer of split-related (HESR) family of basic helix-loop-helix (bHLH)-type transcriptional repressors. Expression of this gene is induced by the Notch and c-Jun signal transduction pathways. Two similar and redundant genes in mouse are required for embryonic cardiovascular development, and are also implicated in neurogenesis and somitogenesis. Alternative splicing results in multiple transcript variants. targetId GeneCard:HEY1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HEY1 validation Human_-_:missing vendorId sc-16424 vendorName Santa Cruz Biotechnology term HMGN1_(ab51212) tag HMGN1AB51212 type Antibody label HMGN1 (ab5212) antibodyDescription Rabbit polyclonal A/G affinity purified, immunogen= synthetic peptide derived from residues 50 to the C-terminus of Human HMGN1 / HMG14. Antibody Target: HMGN1 lab Struhl lots 128175 orderUrl http://www.abcam.com/HMG14-antibody-ab5212.html target HMGN1 targetDescription HMGN1 is one of four members of the high mobility group nucleosome binding proteins. HMGN1 is ubiquitously expressed and has been implicated in promoting transcription. targetId GeneCard:HMGN1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HMGN1 validation Human_-_HMGN1_(ab51212)(Western_blot,Immunoprecipitation):human_HMGN1_ab51212_validation_Struhl.pdf vendorId ab5212 vendorName abcam term HMGN3 tag HMGN3 type Antibody label HMGN3 (NB100-61076) antibodyDescription Rabbit polyclonal A/G affinity purified. Raised against an amino acids 60 to 99 of human HMGN3. Vendor recommeds its use for detection of HMGN3 in human samples using immunohistochemistry. Antibody Target: HMGN3 lab Struhl lots 1 orderUrl http://www.novusbio.com/HMGN3-Antibody_NB100-61076.html target HMGN3 targetClass TFNS targetDescription HMGN3 is a high-mobility group protein. These proteins are small, 8 to 11 kDa, ubiquitous proteins believed to play a role in chromatin structure. HMGNs bind to nucleosomes between the histone core and DNA and reduce chromatin compaction. As a result HMGNs, HMGN3 included, are believed to increase access to DNA for DNA replication, repair and transcription. HMGN3 has specifically been implicated in the action of Thyroid horomone receptors. targetId GeneCard:HMGN3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HMGN3 validation Human_-_HMGN3_(NB100-61076)(Western_blot,Immunoprecipitation):human_HMGN3_validation_Struhl.pdf vendorId NB100-61076 vendorName Novus Biologicals term HNF4A tag HNF4A type Antibody label HNF4A (sc-6556) antibodyDescription Goat polyclonal IgG. Antibody Target: HNF4A lab Snyder orderUrl http://www.scbt.com/datasheet-6556-hnf-4alpha-c-19-antibody.html target HNF4A targetClass TFSS targetDescription Epitope mapping at the C-terminus of Rab 11 of human origin targetId GeneCard:HNF4A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HNF4A validation Human_-_:missing vendorId sc-6556 vendorName Santa Cruz Biotechnology term HNF4A_(SC-8987) tag HNF4ASC8987 type Antibody label HNF4A (sc-8987) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to a.a. 295-465 mapping at the C-terminus of HNF4A of human origin. Antibody Target: HNF4A lab Myers lots G1309 orderUrl http://www.scbt.com/datasheet-8987-hnf-4alpha-h-171-antibody.html target HNF4A targetClass TFSS targetDescription The protein encoded by this gene is a nuclear transcription factor which binds DNA as a homodimer. The encoded protein controls the expression of several genes, including hepatocyte nuclear factor 1 alpha, a transcription factor which regulates the expression of several hepatic genes (RefSeq). targetId GeneCard:HNF4A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HNF4A validation Human_-_HNF4A_(sc-8987)(Immunoprecipitation-Western_blot,IP-MassSpec):human_HNF4a_SC-8987_validation_Myers.pdf vendorId sc-8987 vendorName Santa Cruz Biotechnology term HNF4G_(SC-6558) tag HNF4G type Antibody label HNF4G (sc-6558) antibodyDescription Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin. Antibody Target: HNF4G lab Myers lots I299 orderUrl http://www.scbt.com/datasheet-6558-hnf-4gamma-c-18-antibody.html target HNF4G targetClass TFSS targetDescription Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene targetId GeneCard:HNF4G targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HNF4G validation Human_-_HNF4G_(sc-6558)(Western_blot,IP-MassSpec):human_HNF4G_SC-6558_validation_Myers.pdf vendorId sc-6558 vendorName Santa Cruz Biotechnology term HP1gamma_(ab10480) tag HP1GAMMAAB10480 type Antibody label HP1gamma (ab10480) antibodyDescription Rabbit polyclonal affinity purified to a synthetic peptide conjugated to KLH, derived from within residues 1 - 100 of Mouse HP1 gamma Antibody Target: CBX3 lab Bernstein lots GR22075-1 orderUrl http://www.abcam.com/HP1-gamma-antibody-ab10480.html target CBX3 targetDescription CBX3 seems to be involved in transcriptional silencing in heterochromatin-like complexes. It recognizes and binds histone H3 tails methylated at Lys-9, leading to epigenetic repression. It may contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). targetId GeneCard:CBX3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CBX3 validation Human_-_HP1gamma_(ab10480)(ChIP-seq,Western_blot):human_HP1gamma_ab10480_validation_Bernstein.pdf vendorId ab10480 vendorName abcam term HSF1 tag HSF1 type Antibody label HSF1 (sc-9144) antibodyDescription Rabbit polyclonal IgG. Antibody Target: HSF1 lab Snyder orderUrl http://www.scbt.com/datasheet-9144-hsf1-h-311-antibody.html target HSF1 targetClass TFSS targetDescription Epitope corresponding to amino acids 219-529 of heat shock transcription factor 1 (HSF1) of human origin targetId GeneCard:HSF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=HSF1 validation Human_-_HSF1(Immunoprecipitation,Motif_Enrichment):human_HSF1_validation_Snyder.pdf vendorId sc-9144 vendorName Santa Cruz Biotechnology term hSpt5_(sc-28678) tag HSPT5SC28678 type Antibody label hSpt5 (sc-28678) antibodyDescription Rabbit polyclonal A/G affinity purified. SPT5 Antibody (H-300) epitope corresponding to amino acids 61-360 mapping near the N-terminus of SPT5 of human origin. Antibody Target: SUPT5H lab Struhl orderUrl http://www.scbt.com/datasheet-28678-spt5-h-300-antibody.html target SUPT5H targetDescription hSpt5 heterodimerizes with hSpt4 to form the DRB Sensitivity Inducing Factor (DSIF). DSIF play dual roles in elongation. First, in a conjunction with NELF, dephosphorylated state DSIF blocks RNA polymerase II (RNAPII) from shifting from early elongation to productive elongation. Second, after phosphorylation DSIF continues to associate with elongating RNAPII to facilitate recruitment of factors required for processing of the mRNA. targetId GeneCard:SUPT5H targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SUPT5H validation Human_-_hSpt5_(sc-28678)(Western_blot,Immunoprecipitation):human_hSpt5_sc-28678_validation_Struhl.pdf vendorId sc-28678 vendorName Santa Cruz Biotechnology term IGF2BP1 tag IGF2BP1 type Antibody label IGF2BP1 (07-104) antibodyDescription Rabbit polyclonal affinity purified recognizes IGF2 mRNA-binding protein 3 at the C-terminus Antibody Target: IGF2BP1 lab Tenenbaum lots NRG1665149 orderUrl http://www.millipore.com/catalogue/item/07-104 target IGF2BP1 targetDescription Insulin-like growth factor 2 mRNA binding protein 1 (Homo sapiens) targetId GeneCard:IGF2BP1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IGF2BP1 validation Human_-_IGF2BP1_(07-104)(Western_blot,Immunoprecipitation):human_IGF2BP1_07-104_validation_Tenenbaum.pdf vendorId 07-104 vendorName Millipore term IKZF1_(IkN)_(UCLA) tag IKZF1IKNUCLA type Antibody label IKZF1 (IKZF1 (IkN)) antibodyDescription Rabbit polyclonal antibody raised against a recombinant protein encompassing the amino-terminus of the murine IKZF1 protein. Antibody Target: IKZF1 lab Farnham orderUrl http://people.healthsciences.ucla.edu/institution/personnel?personnel_id=45693 target IKZF1 targetDescription IKAROS family zinc finger 1 (Ikaros or IKZF1) is a C2H2 zinc finger transcription factor that is associated with various chromatin-modifying complexes and is suggested to play a role in the development of lymphocytes, B- and T-cells. targetId GeneCard:IKZF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IKZF1 validation Human_-_IKZF1_(IkN)_(UCLA)(Western_blot,ChIP-seq):human_IKZF1_IkN_UCLA_validation_Farnham.pdf vendorId IKZF1_(IkN) vendorName Dr. Stephen Smale at UCLA term Ini1 tag INI1 type Antibody label INI1 (sc-16189) antibodyDescription Goat polyclonal. Ini1 (C-20) is an affinity purified antibody raised against a peptide mapping near the C-terminus of Ini1 of human origin. Antibody Target: SMARCB1 lab Snyder lots C052 orderUrl http://www.scbt.com/datasheet-16189-ini1-c-20-antibody.html target SMARCB1 targetClass ChromRem targetDescription Ini1 (BAF47, SMARCB1) is a ubiquitous 47 kD component of the SWI/SNF chromatin-remodeling complex. targetId GeneCard:SMARCB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMARCB1 validation Human_-_INI1(sc-16189)(Immunoprecipitation,IP-MassSpec):human_INI1_validation_Snyder.pdf vendorId sc-16189 vendorName Santa Cruz Biotechnology term IRF1 tag IRF1 type Antibody label IRF1 (sc-497) antibodyDescription Rabbit polyclonal. IRF-1 (C-20) is an affinity purified antibody raised against a peptide mapping at the C-terminus of IRF-1 of human origin. Antibody Target: IRF1 lab Farnham orderUrl http://www.scbt.com/datasheet-497-irf-1-c-20-antibody.html target IRF1 targetClass TFSS targetDescription Interferon regulatory factor 1 is a member of the interferon regulatory transcription factor (IRF) family. IRF1 serves as an activator of interferons alpha and beta transcription and also functions as a transcription activator of genes induced by interferons alpha, beta, and gamma. IRF1 has been shown to play roles in regulating apoptosis and tumor suppression. targetId GeneCard:IRF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IRF1 validation Human_-_:missing vendorId sc-497 vendorName Santa Cruz Biotechnology term IRF3 tag IRF3 type Antibody label IRF3 (sc-9082) antibodyDescription Rabbit polyclonal. Epitope corresponding to amino acids 1-425 of IRF-3 of human origin. Antibody Target: IRF3 lab Snyder orderUrl http://www.scbt.com/datasheet-9082-irf-3-fl-425-antibody.html target IRF3 targetClass TFSS targetDescription Mediates interferon-stimulated response element (ISRE) promoter activation. DsRNA leads to IRF3 phosphorylation on the C-terminal serine/threonine cluster. This induces a conformational change, leading to its dimerization, nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of genes under the control of ISRE. targetId GeneCard:IRF3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IRF3 validation Human_-_IRF3(Immunoblot):human_IRF3_validation_Snyder.pdf vendorId sc-9082 vendorName Santa Cruz Biotechnology term IRF4_(SC-6059) tag IRF4 type Antibody label IRF4 (sc-6059) antibodyDescription Goat polyclonal IgG, epitope mapping at the C-terminus of IRF-4 of mouse origin. Antibody Target: IRF4 lab Myers lots IO1O6 orderUrl http://www.scbt.com/datasheet-6059-irf-4-m-17-antibody.html target IRF4 targetClass TFSS targetDescription The protein encoded by this gene belongs to the IRF (interferon regulatory factor) family. It functions as a lymphocyte specific transcription factor and negatively regulates TLR signaling by selectively competing with IRF5. A chromosomal translocation involving this gene and the IgH locus, t(6;14)(p25;q32), may be a cause of multiple myeloma (RefSeq). targetId GeneCard:IRF4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IRF4 validation Human_-_IRF4_(sc-6059)(Immunoprecipitation-Western_blot,IP-MassSpec):human_IRF4_SC-6059_validation_Myers.pdf vendorId sc-6059 vendorName Santa Cruz Biotechnology term IRF9_(SC-496) tag IRF9SC496 type Antibody label IRF9 (sc-496) antibodyDescription Rabbit polyclonal, epitope mapping at the C-terminus of IRF9 of human origin. Antibody Target: IRF9 lab Myers lots A1111 K1302 orderUrl http://www.scbt.com/datasheet-496-isgf-3gamma-p48-c-20-antibody.html target IRF9 targetDescription Transcription regulatory factor that mediates signaling by type I IFNs (IFN-alpha and IFN-beta). Following type I IFN binding to cell surface receptors, Jak kinases (TYK2 and JAK1) are activated, leading to tyrosine phosphorylation of STAT1 and STAT2. The phosphorylated STATs dimerize, associate with IRF9/ISGF3G to form a complex termed ISGF3 transcription factor, that enters the nucleus. ISGF3 binds to the IFN stimulated response element (ISRE) to activate the transcription of interferon stimulated genes, which drive the cell in an antiviral state (provided by RefSeq) targetId GeneCard:IRF9 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=IRF9 validation Human_-_IRF9_(sc-496)(Western_blot,IP-MassSpec):human_IRF9_SC-496_sc-496_validation_Myers.pdf vendorId sc-496 vendorName Santa Cruz Biotechnology term JARID1A_(ab26049) tag JARID1AAB26049 type Antibody label JARID1A (ab26049) antibodyDescription Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: KDM5A lab Bernstein lots 910477 orderUrl http://www.abcam.com/KDM5A-Jarid1A-RBBP2-antibody-ab26049.html target KDM5A targetDescription Histone demethylase that specifically demethylates targetId GeneCard:KDM5A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KDM5A validation Human_-_JARID1A_(ab26049)(Western_blot,ChIP-seq):human_JARID1A_validation_Bernstein.pdf vendorId ab26049 vendorName abcam term JMJD2A_(A300-861A-1) tag JMJD2AA300861A1 type Antibody label JMJD2A (A300-861A) antibodyDescription Rabbit polyclonal antigen affinity purified, unconjugated, liquid. Antibody Target: KDM4A lab Bernstein lots A300-861A-1 orderUrl http://www.bethyl.com/product/A300-861A target KDM4A targetDescription JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor. targetId GeneCard:KDM4A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KDM4A validation Human_-_JMJD2A_(A300-861A)(ChIP-seq,Western_blot):human_JMJD2A_A300-861A-1_validation_Bernstein.pdf vendorId A300-861A vendorName Bethyl Laboratories term JunD tag JUND type Antibody label JUND (sc-74) antibodyDescription Rabbit polyclonal IgG. Antibody Target: JUND lab Myers, Snyder orderUrl http://www.scbt.com/product.php?datasheet=74 target JUND targetClass TFSS targetDescription The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq) targetId GeneCard:JUND targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=JUND validation Human_-_JunD(sc-74)(Western_blot,IP-MassSpec):human_JunD_validation_Myers.pdf Mouse_-_:missing vendorId sc-74 vendorName Santa Cruz Biotechnology term KAP1 tag KAP1 type Antibody label KAP1 (ab10483) antibodyDescription Rabbit polyclonal. Immunogen was a synthetic peptide, which represented a portion of human tripartite motif-containing 28 (KAP1) encoded within exon 1. Antibody Target: TRIM28 lab Farnham lots 193224 orderUrl http://www.abcam.com/index.html?datasheet=10483 target KAP1 targetClass HISase targetDescription KRAB Associated Protein 1, helps regulate transcriptional repression. targetId GeneCard:TRIM28 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRIM28 validation Human_-_KAP1(Western_blot,Immunoprecipitation-Western_blot):human_KAP1_validation_Farnham.pdf vendorId ab10483 vendorName abcam term KAT3A_(ab2832) tag KAT3AAB2832 type Antibody label KAT3A (ab2832) antibodyDescription Rabbit polyclonal affinity purified to a synthetic peptide, ATSSPATSQTGPGIC, corresponding to amino acids 162-176 in the nuclear factor binding domain of Human KAT3A / CBP. Antibody Target: CREBBP lab Bernstein orderUrl http://www.abcam.com/KAT3A--CBP-antibody-ChIP-Grade-ab2832.html target CREBBP targetDescription Cyclic AMP-responsive enhancer binding protein (CREB) binding protein (CBP) and p300 are closely related transcriptional coactivators that have been shown to directly interact with many different DNA-binding transcription factors. Both CBP and p300 have been shown to display histone acetyltransferase (HAT) activity, capable of acetylating all four core histone particles in nucleosomes. targetId GeneCard:CREBBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CREBBP validation Human_-_KAT3A_(ab2832)(ChIP-seq,Western_blot):human_KAT3A_ab2832_validation_Bernstein.pdf vendorId ab2832 vendorName abcam term LEF1_(SC-8592) tag LEF1 type Antibody label LEF1 (sc-8592) antibodyDescription Goat polyclonal IgG, epitope mapping near the C-terminus of LEF1 of human origin. Antibody Target: LEF1 lab Myers lots C2409 orderUrl http://www.scbt.com/datasheet-8592-lef-1-c-19-antibody.html target LEF1 targetDescription This gene encodes a transcription factor belonging to a family of proteins that share homology with the high mobility group protein-1. The proteins encoded by this gene can bind to a functionally important site in the T-cell receptor-alpha enhancer, thereby conferring maximal enhancer activity (RefSeq). targetId GeneCard:LEF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=LEF1 validation Human_-_LEF1_(sc-8592)(Immunoprecipitation-Western_blot,IP-MassSpec):human_LEF1_SC-8592_validation_Myers.pdf vendorId sc-8592 vendorName Santa Cruz Biotechnology term LSD1 tag LSD1 type Antibody label LSD1/KDM1A (A300-215A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: KDM1A lab Bernstein lots A300-215A-1 orderUrl http://www.bethyl.com/product/A300-215A/ target KDM1A targetDescription BHC110/LSD1 is a histone demethylase and a component of several histone deacetylase complexes. BHC110/LSD1 is able to specifically catalyze the demethylation of Lys4 of histone H3. As part of histone deacetylase complexes BHC110/LSD1 functions as a corepressor of transcription. targetId GeneCard:KDM1A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KDM1A validation Human_-_LSD1_(A300-215A)(ChIP-seq,Western_blot):human_LSD1_validation_Bernstein.pdf vendorId A300-215A vendorName Bethyl Laboratories term MafF_(M8194) tag MAFF type Antibody label MAFF (M8194) antibodyDescription Rabbit polyclonal. Raised against synthetic peptide corresponding to amino acids 147-163 of human MAFF. The immunizing peptide does not cross-react with other members of the family. Antibody Target: MAFF lab Snyder orderUrl http://www.sigmaaldrich.com/ target MAFF targetClass TFSS targetDescription The protein encoded by this gene is a (bZIP) transcription factor that lacks a transactivation domain. It is known to bind the US-2 DNA element in the promoter of the oxytocin receptor (OTR) gene and most likely heterodimerizes with other leucine zipper-containing proteins to enhance expression of the OTR gene during term pregnancy. Can also form homodimers, and since it lacks a transactivation domain, the homodimer may act as a repressor of transcription. May also be involved in the cellular stress response. targetId GeneCard:MAFF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MAFF validation Human_-_:missing vendorId M8194 vendorName Sigma-Aldrich term MafK_(ab50322) tag MAFK type Antibody label MAFK (ab50322) antibodyDescription Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MAFK lab Snyder lots 904274 orderUrl http://www.abcam.com/MAFK-antibody-ab50322.html target MAFK targetClass TFSS targetDescription NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites. targetId GeneCard:MAFK targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MAFK validation Human_-_MAFK_(ab50322)(Immunoprecipitation,ChIP-seq):human_MafK_ab50322_validation_Snyder.pdf Mouse_-_MAFK_(ab50322)(Immunoprecipitation,ChIP-seq):mouse_MafK_ab50322_validation_Snyder.pdf vendorId ab50322 vendorName abcam term MafK_(SC-477) tag MAFKb type Antibody label MAFK (sc-477) antibodyDescription Rabbit polyclonal raised against epitope mapping at the C-terminus of NF-E2 p18 of mouse origin; recommended for detection of NF-E2 p18 (MafK) of mouse, rat and human origin. Antibody Target: MAFK lab Snyder lots K1709 orderUrl http://www.scbt.com/datasheet-477-nf-e2-p18-c-16-antibody.html target MAFK targetClass TFSS targetDescription NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites. targetId GeneCard:MAFK targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MAFK validation Human_-_MafK(sc-477)(Immunoprecipitation,ChIP-seq):human_MafK_sc477_validation_Snyder.pdf vendorId sc-477 vendorName Santa Cruz Biotechnology term Max tag MAX type Antibody label MAX (sc-197) antibodyDescription Rabbit polyclonal IgG affinty purified, epitope mapping at the C-terminus of Max of human origin. Antibody Target: MAX lab Myers, Snyder lots J0809 orderUrl http://www.scbt.com/datasheet-197-max-c-17-antibody.html target MAX targetClass TFSS targetDescription The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq). targetId GeneCard:MAX targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MAX validation Human_-_MAX(sc-197)(Immunoprecipitation,Motif_Enrichment):human_Max_sc-197_validation_Snyder.pdf Mouse_-_MAX(sc-197)(Immunoprecipitation,Motif_Enrichment):mouse_Max_sc-197_validation_Snyder.pdf vendorId sc-197 vendorName Santa Cruz Biotechnology term MAZ_(ab85725) tag MAZAB85725 type Antibody label MAZ (ab85725) antibodyDescription Rabbit polyclonal affinity purified, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ lab Snyder lots GR41711-2 orderUrl http://www.abcam.com/MAZ-antibody-ab85725.html target MAZ targetDescription May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors. targetId GeneCard:MAZ targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MAZ validation Human_-_MAZ(ab85725)(Immunoprecipitation,IP-MassSpec):human_MAZ_ab85725_validation_Snyder.pdf Mouse_-_MAZ(ab85725)(Immunoprecipitation,IP-MassSpec):mouse_MAZ_ab85725_validation_Snyder.pdf vendorId ab85725 vendorName abcam term MBD4_(SC-271530) tag MBD4SC271530 type Antibody label MBD4 (sc-271530) antibodyDescription Mouse monoclonal IgG, specific for an epitope mapping between a.a. 515-555 within an internal region of MBD4 of mouse origin. Antibody Target: MBD4 lab Myers lots A1111 H1210 orderUrl http://www.scbt.com/datasheet-271530-mbd4-d-6-antibody.html target MBD4 targetDescription MBD4 may function to mediate the biological consequences of the methylation signal. In addition, MBD4 has protein sequence similarity to bacterial DNA repair enzymes and thus may have some function in DNA repair. Further, MBD4 gene mutations are detected in tumors with primary microsatellite-instability (MSI), a form of genomic instability associated with defective DNA mismatch repair, and MBD4 gene meets 4 of 5 criteria of a bona fide MIS target gene. (provided by RefSeq) targetId GeneCard:MBD4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MBD4 validation Human_-_MBD4_(sc-271530)(Western_blot,IP-MassSpec):human_MBD4_SC-271530_sc-271530_validation_Myers.pdf vendorId sc-271530 vendorName Santa Cruz Biotechnology term Med1_(sc-8998) tag MED1SC8998 type Antibody label MED1 (sc-8998) antibodyDescription Rabbit polyclonal A/G affinity purified, epitope corresponding to amino acids 502-756 of TRAP220 of mouse origin. Antibody Target: MED1 lab Struhl orderUrl http://www.scbt.com/datasheet-8998-trap220-m-255-antibody.html target MED1 targetDescription MED1 is a core subunit of the large coactivator known as mediator. Mediator is believed to promote transcription by bridging transcription factors and the RNA polymerase II holoenzyme. targetId GeneCard:MED1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MED1 validation Human_-_Med1_(sc-8998)(Western_blot,Immunoprecipitation):human_Med1_sc-8998_validation_Struhl.pdf vendorId sc-8998 vendorName Santa Cruz Biotechnology term Med26_(sc-48776) tag MED26SC48776 type Antibody label MED26 (sc-48776) antibodyDescription Rabbit polyclonal A/G affinity purified, epitope corresponding to amino acids 373-600 mapping at the C-terminus of CRSP70 of human origin. Antibody Target: MED26 lab Struhl orderUrl http://www.scbt.com/datasheet-48776-crsp70-h-228-antibody.html target MED26 targetDescription MED26 is a subunit of the large coactivator known as mediator. MED26 is subunit found to be mutually exclusive from the CDK8 module of mediator. MED26 has been associated with activating effects on transcription in context specific manner. Mediator is believed to promote transcription by bridging transcription factors and the RNA polymerase II holoenzyme. targetId GeneCard:MED26 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MED26 validation Human_-_Med26_(sc-48776)(Western_blot,Immunoprecipitation):human_Med26_sc-48776_validation_Struhl.pdf vendorId sc-48776 vendorName Santa Cruz Biotechnology term MEF2A tag MEF2A type Antibody label MEF2A (sc-313) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A lab Myers orderUrl http://www.scbt.com/datasheet-313-mef-2-c-21-antibody.html target MEF2A targetClass TFSS targetDescription The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes. targetId GeneCard:MEF2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MEF2A validation Human_-_MEF2A(Immunoblot):human_MEF2A_validation_Myers.pdf vendorId sc-313 vendorName Santa Cruz Biotechnology term MEF2C_(SC-13268) tag MEF2C type Antibody label MEF2C (sc-13268) antibodyDescription Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin. Antibody Target: MEF2C lab Myers lots K2009 orderUrl http://www.scbt.com/datasheet-13268-mef-2c-c-17-antibody.html target MEF2C targetClass TFSS targetDescription This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq) targetId GeneCard:MEF2C targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MEF2C validation Human_-_MEF2C_(sc-13268)(Western_blot,Motif_Enrichment):human_MEF2C_SC-13268_validation_Myers.pdf vendorId sc-13268 vendorName Santa Cruz Biotechnology term MTA3_(SC-81325) tag MTA3SC81325 type Antibody label MTA3 (sc-81325) antibodyDescription Mouse monoclonal IgG, raised against a recombinant protein corresponding to a region near the N-terminus of MTA3 of human origin. Antibody Target: MTA3 lab Myers lots F1110 orderUrl http://www.scbt.com/datasheet-81325-mta3-428c2a-antibody.html target MTA3 targetDescription Plays a role in maintenance of the normal epithelial architecture through the repression of SNAI1 transcription in a histone deacetylase-dependent manner, and thus the regulation of E-cadherin levels. targetId GeneCard:MTA3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MTA3 validation Human_-_MTA3_(sc-81325)(Western_blot,IP-MassSpec):human_MTA3_SC-81325_sc-81325_validation_Myers.pdf vendorId sc-81325 vendorName Santa Cruz Biotechnology term Mxi1_(AF4185) tag MXI1 type Antibody label MXI1 (AF4185) antibodyDescription Goat polyclonal IgG affinity purified, raised against E. coli-derived rhMxi1. Antibody Target: MXI1 lab Snyder lots ZIJ0107031 orderUrl http://www.rndsystems.com/pdf/AF4185.pdf target MXI1 targetClass TFSS targetDescription Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX targetId GeneCard:MXI1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MXI1 validation Human_-_MXI1(Immunoprecipitation,IP-MassSpec):human_MXI1_validation_Snyder.pdf Mouse_-_MXI1(Immunoprecipitation,IP-MassSpec):mouse_Mxi1_validation_Snyder.pdf vendorId AF4185 vendorName R&D Systems term MYBL2_(SC-81192) tag MYBL2SC81192 type Antibody label MYBL2 (sc-81192) antibodyDescription Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of B-Myb of human origin. Antibody Target: MYBL2 lab Myers lots B1611 orderUrl http://www.scbt.com/datasheet-81192-b-myb-mybad10a-antibody.html target MYBL2 targetDescription The protein encoded by this gene, a member of the MYB family of transcription factor genes, is a nuclear protein involved in cell cycle progression. The encoded protein is phosphorylated by cyclin A/cyclin-dependent kinase 2 during the S-phase of the cell cycle and possesses both activator and repressor activities. It has been shown to activate the cell division cycle 2, cyclin D1, and insulin-like growth factor-binding protein 5 genes. Transcript variants may exist for this gene, but their full-length natures have not been determined. (provided by RefSeq) targetId GeneCard:MYBL2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MYBL2 validation Human_-_MYBL2_(sc-81192)(Western_blot,IP-MassSpec):human_MYBL2_SC-81192_sc-81192_validation_Myers.pdf vendorId sc-81192 vendorName Santa Cruz Biotechnology term MyoD_(sc-32758) tag SC32758 type Antibody label MYOD (sc-32758) antibodyDescription Mouse monoclonal antibody raised against recombinant MYOD of mouse origin with an epitope mapping to amino acids 180-189. Antibody Target: MYOD1 lab Wold orderUrl http://www.scbt.com/datasheet-32758-myod-5-8a-antibody.html target MYOD1 targetDescription This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiation. The protein is also involved in muscle regeneration. It activates its own transcription which may stabilize commitment to myogenesis. (provided by RefSeq) targetId GeneCard:MYOD1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MYOD1 validation Mouse_-_:missing vendorId sc-32758 vendorName Santa Cruz Biotechnology term Myogenin_(sc-12732) tag SC12732 type Antibody label Myogenin (sc-12732) antibodyDescription Mouse monoclonal antibody; epitope mapping within amino acids 138-158 of myogenin of rat origin. Antibody Target: MYOG lab Wold orderUrl http://www.scbt.com/datasheet-12732-myogenin-f5d-antibody.html target MYOG targetDescription Myogenin is a muscle-specific transcription factor that can induce myogenesis in a variety of cell types in tissue culture. It is a member of a large family of proteins related by sequence homology, the helix-loop-helix (HLH) proteins. It is essential for the development of functional skeletal muscle. (provided by RefSeq) targetId GeneCard:MYOG targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=MYOG validation Mouse_-_:missing vendorId sc-12732 vendorName Santa Cruz Biotechnology term NANOG_(SC-33759) tag NANOG type Antibody label NANOG (sc-33759) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to amino acids 151-305 mapping at the C-terminus of Nanog of human origin. Antibody Target: NANOG lab Myers lots C0909 orderUrl http://www.scbt.com/datasheet-33759-nanog-h-155-antibody.html target NANOG targetClass TFSS targetDescription Transcription regulator involved in inner cell mass and embryonic stem (ES) cells proliferation and self-renewal. Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages. Blocks bone morphogenetic protein-induced mesoderm differentiation of ES cells by physically interacting with SMAD1 and interfering with the recruitment of coactivators to the active SMAD transcriptional complexes (By similarity). Acts as a transcriptional activator or repressor (By similarity). Binds optimally to the DNA consensus sequence 5'-TAAT[GT][GT]-3' or 5'-[CG][GA][CG]C[GC]ATTAN[GC]-3' (By similarity). When overexpressed, promotes cells to enter into S phase and proliferation (By similarity) (provided by RefSeq). targetId GeneCard:NANOG targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NANOG validation Human_-_NANOG_(sc-33759)(Western_blot,IP-MassSpec):human_NANOG_SC-33759_validation_Myers.pdf vendorId sc-33759 vendorName Santa Cruz Biotechnology term NCoR tag NCOR type Antibody label NCoR (A301-145A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: NCOR1 lab Bernstein lots A301-145A-1 orderUrl http://www.bethyl.com/product/A301-145A/ target NCOR1 targetDescription The nuclear receptor corepressor protein (NCoR) mediates gene repression by interacting with nuclear receptors. NCoR mediates repression by associating with SIN3A/B and the histone deacetylases, HDAC1 and HDAC2, and promoting the formation of repressive chromatin structures. targetId GeneCard:NCOR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NCOR1 validation Human_-_NCOR_(A301-145A)(ChIP-seq,Western_blot):human_NCOR_A301-145A_validation_Bernstein.pdf vendorId A301-145A vendorName Bethyl Laboratories term NELFe tag NELFE type Antibody label NELF-E (sc-32912) antibodyDescription Rabbit polyclonal A/G affinity purified NELF-E (RDBP). Antibody Target: RDBP lab Struhl orderUrl http://www.scbt.com/datasheet-32912-nelf-e-h-140-antibody.html target RDBP targetClass TFNS targetDescription NELF-E (RDBP) is a part of the negative elongation factor complex which binds to RNAPII to suppress elongation. targetId GeneCard:RDBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RDBP validation Human_-_NELFe_(sc-32912)(Western_blot,ChIP-seq):human_NELFe_sc-32912_validation_Struhl.pdf Mouse_-_:missing vendorId sc-32912 vendorName Santa Cruz Biotechnology term NFIC_(SC-81335) tag NFICSC81335 type Antibody label NFIC (sc-81335) antibodyDescription Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of NF-1 of human origin. Antibody Target: NFIC lab Myers lots L0808 orderUrl http://www.scbt.com/datasheet-81335-nf-1-nfi5i299-antibody.html target NFIC targetDescription Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. targetId GeneCard:NFIC targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFIC validation Human_-_NFIC_(sc-81335)(Western_blot,IP-MassSpec):human_NFIC_SC-81335_validation_Myers.pdf vendorId sc-81335 vendorName Santa Cruz Biotechnology term NF-E2 tag NFE2 type Antibody label NF-E2 (sc-291) antibodyDescription Rabbit polyclonal, epitope mapping at the C-terminus of NFE2 of mouse origin and recommended for detection of protein of rat, mouse and human origin. Antibody Target: NFE2 lab Snyder lots D1703 orderUrl http://www.scbt.com/product.php?datasheet=291 target NFE2 targetClass TFSS targetDescription Nuclear factor, erythroid-derived 2 targetId GeneCard:NFE2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFE2 validation Human_-_:missing vendorId sc-291 vendorName Santa Cruz Biotechnology term NF-E2_(SC-22827) tag NFE2b type Antibody label NF-E2 (sc-22827) antibodyDescription Rabbit polyclonal, epitope: 1-230 mapping at the N-terminus of NFE2 of human origin. Antibody Target: NFE2 lab Snyder orderUrl http://www.scbt.com/product.php?datasheet=22827 target NFE2 targetClass TFSS targetDescription Transcription factor NFE2 45 kDa subunit is a component of the NFE2 complex and essential for regulating erythroid and megakaryocytic maturation and differentiation. Binds to the hypersensitive site 2 (HS2) of the beta-globin control region (LCR). This subunit (NFE2)recognizes the TCAT/C sequence of the AP-1-like core palindrome present in a number of erythroid and megakaryocytic gene promoters. Requires MAFK or other small MAF proteins for binding to the NFE2 motif. May play a role in all aspects of hemoglobin production from globin and heme synthesis to procurement of iron. NFE2 has been shown to interact with CREB binding protein. targetId GeneCard:NFE2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFE2 validation Human_-_:missing vendorId sc-22827 vendorName Santa Cruz Biotechnology term NFATC1_(SC-17834) tag NFATC1SC17834 type Antibody label NFATC1 (sc-17834) antibodyDescription Mouse monoclonal IgG, raised against amino acids 1-110 of NFATc1 of human origin. Antibody Target: NFATC1 lab Myers lots G2007 orderUrl http://www.scbt.com/datasheet-17834-nfatc1-h-10-antibody.html target NFATC1 targetDescription The product of this gene is a component of the nuclear factor of activated T cells DNA-binding transcription complex. This complex consists of at least two components: a preexisting cytosolic component that translocates to the nucleus upon T cell receptor (TCR) stimulation, and an inducible nuclear component. Proteins belonging to this family of transcription factors play a central role in inducible gene transcription during immune response. The product of this gene is an inducible nuclear component. It functions as a major molecular target for the immunosuppressive drugs such as cyclosporin A. Five transcript variants encoding distinct isoforms have been identified for this gene. Different isoforms of this protein may regulate inducible expression of different cytokine genes. (provided by RefSeq) targetId GeneCard:NFATC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFATC1 validation Human_-_NFATC1_(sc-17834)(Western_blot,IP-MassSpec):human_NFATC1_SC-17834_sc-17834_validation_Myers.pdf vendorId sc-17834 vendorName Santa Cruz Biotechnology term NFKB tag NFKB type Antibody label NFKB (sc-372) antibodyDescription Rabbit polyclonal IgG affinity purified. Epitope mapping at the C-terminus of NFKB p65 of human origin. Antibody Target: RELA lab Snyder lots A2298 orderUrl http://www.scbt.com/datasheet-372-nfkappab-p65-c-20-antibody.html target RELA targetClass TFSS targetDescription Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFKB p65 targetId GeneCard:RELA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RELA validation Human_-_NFKB(Immunoprecipitation,Motif_Enrichment):human_NFKB_sc-372_validation_Snyder.pdf vendorId sc-372 vendorName Santa Cruz Biotechnology term NF-YA tag NFYA type Antibody label NF-YA antibodyDescription Rabbit polyclonal affinity purified raised against amino acids 139-347 of recombinant human NFYA. Antibody Target: NFYA lab Struhl orderUrl http://www.unimi.it/didattica/scienzemfn/ target NFYA targetClass TFSS targetDescription NFYA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif targetId GeneCard:NFYA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFYA validation Human_-_NF-YA(Western_blot,Immunoprecipitation):human_NF-YA_validation_Struhl.pdf vendorId NF-YA vendorName Dr. R. Mantovani at Universita degli Studi di Milano term NF-YB tag NFYB type Antibody label NF-YB antibodyDescription Rabbit polyclonal affinity purified raised against recombinant full length human NFYB. Antibody Target: NFYB lab Struhl orderUrl http://www.unimi.it/didattica/scienzemfn/ target NFYB targetClass TFSS targetDescription NFYB is the beta subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif targetId GeneCard:NFYB targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NFYB validation Human_-_NF-YB(Western_blot,Immunoprecipitation):human_NF-YB_validation_Struhl.pdf vendorId NF-YB vendorName Dr. R. Mantovani at Universita degli Studi di Milano term Nrf1 tag NRF1 type Antibody label NRF1 (ab55744) antibodyDescription Mouse monoclonal A/G affinity purified, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1 lab Snyder lots GR27905 orderUrl http://www.abcam.com/NRF1-antibody-ab55744.html target NRF1 targetClass TFSS targetDescription NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding. targetId GeneCard:NRF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NRF1 validation Human_-_NRF1(Immunoblot,Motif_Enrichment):human_NRF1_validation_Snyder.pdf vendorId ab55744 vendorName abcam term Nrf2 tag NRF2 type Antibody label Nrf2 (sc-22810) antibodyDescription Rabbit polyclonal IgG. Epitope corresponding to amino acids 1-180 mapping at the N-terminus of GABP-α of human origi. Antibody Target: GABPA lab Snyder orderUrl http://www.scbt.com/datasheet-22810-gabp-alpha-h-180-antibody.html target GABPA targetDescription Epitope corresponding to amino acids 1-180 mapping at the N-terminus of GABP-α of human origin targetId GeneCard:GABPA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GABPA validation Mouse_-_:missing vendorId sc-22810 vendorName Santa Cruz Biotechnology term NRSF tag NRSF type Antibody label NRSF antibodyDescription Mouse monoclonal. Antibody Target: REST lab Myers, Wold lots 20070905JV orderUrl http://www.cns.caltech.edu/people/faculty/anderson.html target REST targetClass TFSS targetDescription Neuron-restrictive silencer transcription factor targetId GeneCard:REST targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=REST validation Human_-_NRSF_(Western_blot,Motif_Enrichment):human_NRSF_validation_Myers.pdf Mouse_-_:missing vendorId NRSF vendorName Dr. David Anderson at Protein Expression Center (pec@caltech.edu) term NR2F2_(SC-271940) tag NR2F2SC271940 type Antibody label NR2F2 (sc-271940) antibodyDescription Mouse monoclonal IgG affinity purified, specific for an epitope mapping between amino acids 13-44 at the N-terminus of NR2F2 of human origin. Antibody Target: NR2F2 lab Myers lots I1410 orderUrl http://www.scbt.com/datasheet-271940-arp-1-e-11-antibody.html target NR2F2 targetDescription This gene encodes a member of the steroid thyroid hormone superfamily of nuclear receptors. The encoded protein is a ligand inducible transcription factor that is involved in the regulation of many different genes. Alternate splicing results in multiple transcript variants. (provided by RefSeq) targetId GeneCard:NR2F2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NR2F2 validation Human_-_NR2F2_(sc-271940)(Western_blot,IP-MassSpec):human_NR2F2_SC-271940_validation_Myers.pdf vendorId sc-271940 vendorName Santa Cruz Biotechnology term NSD2_(ab75359) tag NSD2AB75359 type Antibody label NSD2 (ab75359) antibodyDescription Mouse monoclonal affinity purified, raised against a fusion protein, corresponding to amino acids 1-647 of Human GST-WHSC1/NSD2. Antibody Target: WHSC1 lab Bernstein lots GR47579-1 orderUrl http://www.abcam.com/WHSC1NSD2-antibody-29D1-ab75359.html target WHSC1 targetDescription This is a probable histone methyltransferase, which may act as a transcription regulator that binds DNA and suppresses IL5 transcription. targetId GeneCard:WHSC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=WHSC1 validation Human_-_NSD2_(ab75359)(ChIP-seq,Western_blot):human_NSD2_ab75359_validation_Bernstein.pdf vendorId ab75359 vendorName abcam term p300 tag P300 type Antibody label P300/EP300 (sc-585) antibodyDescription Rabbit polyclonal. Antibody Target: EP300 lab Myers, Ren lots D0411 E2209 orderUrl http://www.scbt.com/product.php?datasheet=585 target EP300 targetClass HISase targetDescription EP300(c-20) targetId GeneCard:EP300 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EP300 validation Human_-_P300(sc-585)(Western_blot):human_P300_SC-585_validation_Myers.pdf Mouse_-_P300(SC-585)(Western_blot,ChIP-seq):mouse_P300_SC-585_validation_Ren.pdf vendorId sc-585 vendorName Santa Cruz Biotechnology term P300_KAT3B tag P300KAT3B type Antibody label P300/EP300/KAT3B (A300-358A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: EP300 lab Bernstein lots A300-358A-1 orderUrl http://www.bethyl.com/product/A300-358A/p300_Antibody?referrer=search_default target EP300 targetClass HISase targetDescription Histone acetyltransferase with sequence similarity to CBP (CREB-binding protein). Regulates transcription by influencing chromatin organization. P300 has been demonstrated to bind to phosphorylated CREB to mediate cAMP-gene regulation. targetId GeneCard:EP300 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EP300 validation Human_-_P300_(A300-358A)(ChIP-seq,Western_blot):human_P300_validation_Bernstein.pdf vendorId A300-358A vendorName Bethyl Laboratories term p300_(SC-584) tag P300b type Antibody label P300/EP300 (sc-584) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: EP300 lab Snyder orderUrl http://www.scbt.com/datasheet-584-p300-n-15-antibody.html target EP300 targetClass HISase targetDescription Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein targetId GeneCard:EP300 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EP300 validation Human_-_:missing Mouse_-_:missing vendorId sc-584 vendorName Santa Cruz Biotechnology term p300_(SC-48343) tag P300c type Antibody label P300/EP300 (sc-48343) antibodyDescription Mouse monoclonal raised against amino acids 774-1045 of p300 of human origin. Antibody Target: EP300 lab Snyder orderUrl http://www.scbt.com/datasheet-48343-p300-f-4-antibody.html target EP300 targetClass HISase targetDescription Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein. targetId GeneCard:EP300 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=EP300 validation Human_-_:missing vendorId sc-48343 vendorName Santa Cruz Biotechnology term PABPC1 tag PABPC1 type Antibody label PABPC1 (04-1467) antibodyDescription Mouse monoclonal. Raised against fusion protein corresponding to full-length human poly (A)-binding protein PABP. Antibody Target: PABPC1 lab Tenenbaum lots JBC1363217 orderUrl http://www.millipore.com/catalogue/item/04-1467 target PABPC1 targetDescription Poly(A) binding protein, cytoplasmic 1 (Homo sapiens). targetId GeneCard:PABPC1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PABPC1 validation Human_-_PABPC1_(04-1467)(Western_blot,Immunoprecipitation):human_PABPC1_04-1467_validation_Tenenbaum.pdf vendorId 04-1467 vendorName Millipore term PAX5-C20 tag PAX5 type Antibody label PAX5 (sc-1974) antibodyDescription Goat polyclonal IgG, 200 micrograms/ml. Epitope mapping at the C-terminus of Pax-5 of human origin. Antibody Target: PAX5 lab Myers lots E1409 orderUrl http://www.scbt.com/datasheet-1974-pax-5-c-20-antibody.html target PAX5 targetClass TFSS targetDescription This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. targetId GeneCard:PAX5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PAX5 validation Human_-_PAX5-C20(Immunoprecipitation-Western_blot,IP-MassSpec):human_PAX5-C20_validation_Myers.pdf vendorId sc-1974 vendorName Santa Cruz Biotechnology term PAX5-N19 tag PAX5b type Antibody label PAX5 (sc-1975) antibodyDescription Goat polyclonal IgG epitope mapping at the N-terminus of Pax-5 of human origin. Antibody Target: PAX5 lab Myers lots I070 orderUrl http://www.scbt.com/datasheet-1975-pax-5-n-19-antibody.html target PAX5 targetClass TFSS targetDescription This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. targetId GeneCard:PAX5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PAX5 validation Human_-_PAX5-N19(Immunoprecipitation-Western_blot,IP-MassSpec):human_PAX5-N19_validation_Myers.pdf vendorId sc-1975 vendorName Santa Cruz Biotechnology term PAX5_(N-15) tag PAX5c type Antibody label PAX5 (ab12000) antibodyDescription Rabbit polyclonal antibody; epitope is a synthetic peptide: MDLEKNYPTPRTSRT, corresponding to amino acids 1-15 of Human PAX5, cross-reacts with human and mouse PAX5. Antibody Target: PAX5 lab Hardison lots 853694 orderUrl http://www.abcam.com/PAX5-antibody-ab12000.html target PAX5 targetClass TFSS targetDescription The PAX5 gene is a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA binding motif, known as the paired box. The PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. The PAX5 gene encodes the B cell lineage specific activator protein (BSAP) that is expressed at early, but not late stages of B cell differentiation. targetId GeneCard:PAX5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PAX5 validation Mouse_-_PAX_N-15(Western_blot):mouse_PAX_N-15_validation_Hardison.pdf vendorId ab12000 vendorName abcam term Pbx3 tag PBX3 type Antibody label PBX3 (sc-891) antibodyDescription Rabbit polyclonal IgG. Antibody Target: PBX3 lab Myers lots H0307 orderUrl http://www.scbt.com/product.php?datasheet=891 target PBX3 targetClass TFSS targetDescription Pbx 3 (D-17) targetId GeneCard:PBX3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PBX3 validation Human_-_PBX3(sc-891)(Western_blot):human_PBX3_SC-891_validation_Myers.pdf vendorId sc-891 vendorName Santa Cruz Biotechnology term PCAF tag PCAF type Antibody label PCAF/KAT2B (A301-666A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Taget: KAT2B lab Bernstein lots A301-666A-1 orderUrl http://www.bethyl.com/product/A301-666A/PCAF_Antibody?referrer=search_default target KAT2B targetDescription PCAF (P300/CBP-associated factor) is a histone acetyltransferase (HAT) identified as a factor that associates with P300/CBP, a transcriptional coactivator of nuclear hormone receptors and other transcription factors. targetId GeneCard:KAT2B targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KAT2B validation Human_-_PCAF_(A301-666A)(ChIP-seq,Western_blot):human_PCAF_validation_Bernstein.pdf vendorId A301-666A vendorName Bethyl Laboratories term PGC1A tag PGC1A type Antibody label PGC1A (sc-13067) antibodyDescription Rabbit polyclonal IgG. PGC-1 Antibody (H-300) Epitope corresponding to amino acids 1-300 mapping at the N-terminus of PPARPγ coactivator-1 (PGC-1) of human origin. Antibody Target: PPARGC1A lab Snyder orderUrl http://www.scbt.com/datasheet-13067-pgc-1-h-300-antibody.html target PPARGC1A targetClass TFSS targetDescription The protein encoded by this gene is a transcriptional coactivator that regulates the genes involved in energy metabolism. This protein interacts with PPARgamma, which permits the interaction of this protein with multiple transcription factors. This protein can interact with, and regulate the activities of, cAMP response element binding protein (CREB) and nuclear respiratory factors (NRFs). targetId GeneCard:PPARGC1A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PPARGC1A validation Human_-_:missing vendorId sc-13067 vendorName Santa Cruz Biotechnology term PHF8_(A301-772A) tag PHF8A301772A type Antibody label PHF8 (A301-772A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8 lab Bernstein lots A301-772A-1 orderUrl http://www.bethyl.com/product/A301-772A target PHF8 targetDescription PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111. targetId GeneCard:PHF8 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PHF8 validation Human_-_PHF8_(A301-772A)(Western_blot,ChIP-seq):human_PHF8_validation_Bernstein.pdf vendorId A301-772A vendorName Bethyl Laboratories term PITX1_(SC-81979) tag PITX1 type Antibody label PITX1 (sc-81979) antibodyDescription Mouse monoclonal IgG, raised against recombinant Pitx1 of human origin. Antibody Target: PITX1 lab Myers lots J0109 orderUrl http://www.scbt.com/datasheet-81979-pitx1-r-129-antibody.html target PITX1 targetDescription This gene encodes a member of the RIEG/PITX homeobox family, which is in the bicoid class of homeodomain proteins. Members of this family are involved in organ development and left-right asymmetry. This protein acts as a transcriptional regulator involved in basal and hormone-regulated activity of prolactin. (provided by RefSeq) targetId GeneCard:PITX1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PITX1 validation Human_-_PITX1_(sc-81979)(Immunoprecipitation-Western_blot,IP-MassSpec):human_PITX1_SC-81979_validation_Myers.pdf vendorId sc-81979 vendorName Santa Cruz Biotechnology term PLU1 tag PLU1 type Antibody label PLU-1 antibodyDescription Rabbit polyclonal Antigen Anti-PLU-1 Affinity Purified, Unconjugated, Liquid. Antibody Target: KDM5B lab Bernstein orderUrl http://cellbio.med.harvard.edu/faculty/shi/ target KDM5B targetDescription JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B. targetId GeneCard:KDM5B targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=KDM5B validation Human_-_PLU1(Western_blot,ChIP-seq):human_PLU1_validation_Bernstein.pdf vendorId PLU-1 vendorName Dr. Yang Shi at Harvard term PML_(SC-71910) tag PMLSC71910 type Antibody label PML (sc-71910) antibodyDescription Mouse monoclonal IgG, N-terminal epitope corresponding to residues 37-51 of PML of human origin. Antibody Target: PML lab Myers lots H1908 orderUrl http://www.scbt.com/datasheet-71910-pml-5g191-antibody.html target PML targetDescription The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This phosphoprotein localizes to nuclear bodies where it functions as a transcription factor and tumor suppressor. Its expression is cell-cycle related and it regulates the p53 response to oncogenic signals. The gene is often involved in the translocation with the retinoic acid receptor alpha gene associated with acute promyelocytic leukemia (APL). Extensive alternative splicing of this gene results in several variations of the protein's central and C-terminal regions; all variants encode the same N-terminus. Alternatively spliced transcript variants encoding different isoforms have been identified. (provided by RefSeq) targetId GeneCard:PML targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PML validation Human_-_PML_(sc-71910)(Western_blot,IP-MassSpec):human_PML_SC-71910_sc-71910_validation_Myers.pdf vendorId sc-71910 vendorName Santa Cruz Biotechnology term Pol2 tag POL2 type Antibody label POL2 (MMS-126R) antibodyDescription Mouse monoclonal, clone 8WG16. Antibody Target: POLR2A lab Farnham, Iyer, Snyder lots 14861301 14922701 E11BF0034 orderUrl http://store.crpinc.com/datasheet.aspx?UpProd=&catalogno=MMS-126R target POLR2A targetClass Pol2 targetDescription RNA Polymerase II targetId GeneCard:POLR2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR2A validation Human_-_Pol2(Immunoprecipitation,IP-MassSpec):human_Pol2_validation_Snyder.pdf Mouse_-_Pol2(Immunoprecipitation,IP-MassSpec):mouse_Pol2_validation_Snyder.pdf vendorId MMS-126R vendorName Covance term Pol2(b) tag POL2b type Antibody label POL2A (MMS-128P) antibodyDescription Mouse monoclonal, clone CTD4H8. Antibody Target: POLR2A deprecated This was not found the be an effective antibody. lab Bernstein lots 147337002 orderUrl http://store.crpinc.com/pdfdatasheet.aspx?catalogno=MMS-128P target POLR2A targetClass Pol2 targetDescription RNA polymerase II. Is responsible for RNA transcription. It is generally enriched at 5' gene ends, probably due to higher rate of occupancy associated with transition from initiation to elongation. targetId GeneCard:POLR2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR2A validation Human_-_:missing vendorId MMS-128P vendorName Covance term Pol2-4H8 tag POL24H8 type Antibody label Pol2-4H8 (ab5408) antibodyDescription Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POLR2A lab Myers,Hardison lots 648628 647708 722997 962594 orderUrl http://www.abcam.com/RNA-polymerase-II-CTD-repeat-YSPTSPS-antibody-4H8-ChIP-Grade-ab5408.html target POLR2A targetClass Pol2 targetDescription This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. targetId GeneCard:POLR2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR2A validation Human_-_Pol2-4H8(Western_blot,IP-MassSpec):human_Pol2-4H8_validation_Myers.pdf Mouse_-_Pol2-4H8(ab5408)(Western_blot):mouse_Pol2-4H8_ab5408_validation_Hardison.pdf vendorId ab5408 vendorName abcam term Pol2(phosphoS2) tag POL2S2 type Antibody label POL2 (phospho S2) (ab5095) antibodyDescription Rabbit polyclonal affinity purified against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POLR2A lab Snyder lots GR32890-1 orderUrl http://www.abcam.com/RNA-polymerase-II-CTD-repeat-YSPTSPS-phospho-S2-antibody-ChIP-Grade-ab5095.html target POLR2A targetClass Pol2 targetDescription RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain. targetId GeneCard:POLR2A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR2A validation Human_-_POL2S2_(ab5095)(Immunoprecipitation,IP-MassSpec):human_PolIIS2_validation_Snyder.pdf Mouse_-_PolIIS2_(ab5095)(Immunoprecipitation,IP-MassSpec):mouse_PolIIS2_validation_Snyder.pdf vendorId ab5095 vendorName abcam term Pol3 tag POL3 type Antibody label POL III(sc-21754) antibodyDescription Mouse monoclonal IgG1. Antibody Target: POLR3G lab Snyder lots D4104 orderUrl http://www.scbt.com/product.php?datasheet=21754 target POLR3G targetDescription RNA Polymerase III targetId GeneCard:POLR3G targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR3G validation Human_-_Pol3(Immunoprecipitation,IP-MassSpec):human_Pol3_validation_Snyder.pdf vendorId sc-21754 vendorName Santa Cruz Biotechnology term POU5F1_(SC-9081) tag POU5F1 type Antibody label POU5F1 (sc-9081) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to amino acids 1-134 of Oct3/4 of human origin. Antibody Target: POU5F1 lab Myers lots F2609 orderUrl http://www.scbt.com/datasheet-9081-oct-3-4-h-134-antibody.html target POU5F1 targetClass TFSS targetDescription This gene encodes a transcription factor containing a POU homeodomain. This transcription factor plays a role in embryonic development, especially during early embryogenesis, and it is necessary for embryonic stem cell pluripotency. A translocation of this gene with the Ewing's sarcoma gene, t(6;22)(p21;q12), has been linked to tumor formation. Alternative splicing, as well as usage of alternative translation initiation codons, results in multiple isoforms, one of which initiates at a non-AUG (CUG) start codon. Related pseudogenes have been identified on chromosomes 1, 3, 8, 10, and 12 (provided by RefSeq). targetId GeneCard:POU5F1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POU5F1 validation Human_-_POU5F1_(sc-9081)(Western_blot,IP-MassSpec):human_POU5F1_SC-9081_validation_Myers.pdf vendorId sc-9081 vendorName Santa Cruz Biotechnology term POU2F2 tag POU2F2 type Antibody label POU2F2 (sc-233) antibodyDescription Rabbit polyclonal. Oct-2(C-20) is an affinity purified antibody raised against a peptide mapping at the C-terminus of Oct-2 of human origin. Antibody Target: POU2F2 lab Myers lots C2609 orderUrl http://www.scbt.com/datasheet-233-oct-2-c-20-antibody.html target POU2F2 targetClass TFSS targetDescription Transcription factor that specifically binds to the octamer motif (5'-ATTTGCAT-3'). Regulates transcription in a number of tissues in addition to activating immunoglobulin gene expression. Modulates transcription transactivation by NR3C1, AR and PGR. Isoform 5 activates the U2 small nuclear RNA (snRNA) promoter. targetId GeneCard:POU2F2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POU2F2 validation Human_-_POU2F2(Immunoprecipitation-Western_blot,IP-MassSpec):human_POU2F2_validation_Myers.pdf vendorId sc-233 vendorName Santa Cruz Biotechnology term PRDM1_(9115) tag PRDM1 type Antibody label PRDM1 (9115) antibodyDescription Rabbit monoclonal antibody against a synthetic peptide corresponding to residues surrounding Val90 of human PRDI-BF1. Antibody Target: PRDM1 lab Snyder orderUrl http://www.cellsignal.com/products/9115.html#references target PRDM1 targetClass TFSS targetDescription Transcriptional repressor that binds specifically to the PRDI element in the promoter of the beta-interferon gene. Drives the maturation of B-lymphocytes into Ig secreting cells. targetId GeneCard:PRDM1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=PRDM1 validation Human_-_:missing vendorId 9115 vendorName Cell Signaling Technology term PU.1 tag PU1 type Antibody label PU.1 (sc-22805) antibodyDescription Rabbit polyclonal IgG. Antibody Target: SPI1 lab Myers lots G1009 orderUrl http://www.scbt.com/product.php?datasheet=22805 target SPI1 targetClass TFSS targetDescription PU.1 (H-135) targetId GeneCard:SPI1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SPI1 validation Human_-_PU1(Immunoprecipitation-Western_blot,IP-MassSpec):human_PU1_validation_Myers.pdf vendorId sc-22805 vendorName Santa Cruz Biotechnology term Rad21 tag RAD21 type Antibody label RAD21 (ab992) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: RAD21 lab Snyder lots 940739 891751 734371 orderUrl http://www.abcam.com/index.html?datasheet=992 target RAD21 targetClass DNARep targetDescription Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14 targetId GeneCard:RAD21 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RAD21 validation Human_-_RAD21(Western_blot,siRNA):human_RAD21_validation_Snyder.pdf Mouse_-_Rad21_(ab992)(Immunoprecipitation,siRNA):mouse_Rad21_validation_Snyder.pdf vendorId ab992 vendorName abcam term RBBP5_(A300-109A) tag RBBP5A300109A type Antibody label RBBP5 (A300-109A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5 lab Bernstein lots A300-109A-2 orderUrl http://www.bethyl.com/product/A300-109A target RBBP5 targetDescription Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1. targetId GeneCard:RBBP5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RBBP5 validation Human_-_RBBP5_(A300-109A)(Western_blot,ChIP-seq):human_RBBP5_validation_Bernstein.pdf vendorId A300-109A vendorName Bethyl Laboratories term REST tag REST type Antibody label REST (17-641) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid lab Bernstein lots JH1786670 orderUrl http://www.millipore.com/catalogue/item/17-641 target REST targetClass TFSS targetDescription A transcriptional repressor which represses neuronal genes in non-neuronal tissues. A member of the Kruppel-type zinc finger transcription factor family. Represses transcription by binding a DNA sequence element called the neuron-restrictive silencer element (NRSE) by associating with two corepressors, mSin3 and CoREST, which recruit HDACs to the promoters of REST-regulated genes. Target is GST fusion amino acids 801-1097 of human REST. targetId GeneCard:REST targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=REST validation Human_-_REST_(17-641)(ChIP-seq,Western_blot):human_REST_validation_Bernstein.pdf vendorId 17-641 vendorName Millipore term RNF2 tag RNF2 type Antibody label RNF2 (A302-869A) antibodyDescription Rabbit polyclonal Antigen Affinity Purified, Unconjugated, Liquid lab Bernstein lots A302-869A-1 orderUrl http://www.bethyl.com/product/A302-869A/RNF2__Antibody?referrer=RNF2 target RNF2 targetDescription Ring finger protein 2 (RNF2) is a polycomb group (PcG) protein. RNF2 has been shown to interact with, and suppress the activity of, transcription factor CP2 (TFCP2/CP2). targetId GeneCard:RNF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RNF2 validation Human_-_RNF2_(A302-869A)(ChIP-seq,Western_blot):human_RNF2_validation_Bernstein.pdf vendorId A302-869A vendorName Bethyl Laboratories term RFX5_(200-401-194) tag RFX5 type Antibody label RFX5 (200-401-194) antibodyDescription Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5 lab Snyder lots 14562 orderUrl http://rockland-inc.com/store/Transcription-Factor-Antibodies-200-401-194-O4L_9248.aspx target RFX5 targetClass TFSS targetDescription Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters targetId GeneCard:RFX5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RFX5 validation Human_-_RFX5_(200-401-194)(Western_blot,Motif_Enrichment):human_RFX5_validation_Snyder.pdf vendorId 200-401-194 vendorName Rockland Immunochemicals term RPC155 tag RPC155 type Antibody label RPC155 (1900) antibodyDescription Rabbit polyclonal - Antiserum 1900 was raised by immunizing rabbits with synthetic peptide PKRPLTFDTNEFHIPLVT (residues 1374?1391 of the RPC155 subunit of human pol III) coupled to KLH. Antibody Target: RPC155 lab Struhl orderUrl http://www.beatson.gla.ac.uk/ target RPC155 targetClass Pol3F targetDescription polymerase (RNA) III (DNA directed) polypeptide A, 155kDa targetId GeneCard:POLR3A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=POLR3A validation Human_-_RPC155(1900)(Western_blot,Correlation):human_RPC155_1900_validation_Struhl.pdf vendorId 1900 vendorName Dr. Robert J. White at Beatson Institute for Cancer Research term RUNX3_(SC-101553) tag RUNX3SC101553 type Antibody label RUNX3 (sc-101553) antibodyDescription Mouse monoclonal IgG, raised against amino acids 191-300 of recombinant RUNX3 of human origin. Antibody Target: RUNX3 lab Myers lots B0909 orderUrl http://www.scbt.com/datasheet-101553-runx3-r3-5g4-antibody.html target RUNX3 targetDescription This gene encodes a member of the runt domain-containing family of transcription factors. A heterodimer of this protein and a beta subunit forms a complex that binds to the core DNA sequence 5'-PYGPYGGT-3' found in a number of enhancers and promoters, and can either activate or suppress transcription. It also interacts with other transcription factors. It functions as a tumor suppressor, and the gene is frequently deleted or transcriptionally silenced in cancer. Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq) targetId GeneCard:RUNX3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RUNX3 validation Human_-_RUNX3_(sc-101553)(Western_blot,IP-MassSpec):human_RUNX3_SC-101553_validation_Myers.pdf vendorId sc-101553 vendorName Santa Cruz Biotechnology term RXRA tag RXRA type Antibody label RXRA (sc-553) antibodyDescription Rabbit polyclonal. RXRa(D-20) is an affinity purified antibody raised against a peptide mapping at the N-terminus of RXRalpha of human origin. Antibody Target: RXRA lab Myers lots C1811 orderUrl http://www.scbt.com/datasheet-553-rxralpha-d-20-antibody.html target RXRA targetClass TFSS targetDescription Retinoid X receptors (RXRs) and retinoic acid receptors (RARs), are nuclear receptors that mediate the biological effects of retinoids by their involvement in retinoic acid-mediated gene activation. These receptors exert their action by binding, as homodimers or heterodimers, to specific sequences in the promoters of target genes and regulating their transcription. The protein encoded by this gene is a member of the steroid and thyroid hormone receptor superfamily of transcriptional regulators. targetId GeneCard:RXRA targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=RXRA validation Human_-_RXRA(Immunoprecipitation-Western_blot,IP-MassSpec):human_RXRA_validation_Myers.pdf vendorId sc-553 vendorName Santa Cruz Biotechnology term SAP30_(39731) tag SAP3039731 type Antibody label SAP30 (39731) antibodyDescription Rabbit polyclonal SAP30 antibody (pAb) raised against recombinant full length human SAP30 protein. Antibody Target: SAP30 lab Bernstein lots 4710001 orderUrl http://www.activemotif.com/catalog/details/39731.html target SAP30 targetDescription SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes. targetId GeneCard:SAP30 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SAP30 validation Human_-_SAP30_(39731)(Western_blot,ChIP-seq):human_SAP30_validation_Bernstein.pdf vendorId 39731 vendorName Active Motif term SETDB1 tag SETDB1 type Antibody label SETDB1 (11231-1-AP) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: SETDB1 lab Farnham lots 2 orderUrl http://www.ptglab.com/Products/SETDB1-Antibody-11231-1-AP.htm target SETDB1 targetClass HISase targetDescription SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure targetId GeneCard:SETDB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SETDB1 validation Human_-_SETDB1(Western_blot,ChIP-seq):human_SETDB1_validation_Farnham.pdf vendorId 11231-1-AP vendorName Proteintech term SETDB1_(SC-66884) tag SETDB1b type Antibody label SETDB1 (sc-66884) antibodyDescription Rabbit polyclonal. SETDB1 (H-300) is an affinity purified antibody raised against an epitope corresponding to amino acids 1-300 mapping at the N-terminus of the human SETDB1 protein. Antibody Target: SETDB1 lab Farnham orderUrl http://www.scbt.com/datasheet-66884-eset-h-300-antibody.html target SETDB1 targetClass HISase targetDescription SETDB1 is a H3K9-selective histone methyltransferase, methylating Lys-9 of Histone H3 and mutations within the SETDB1 gene abolishes its methyltransferase activity. This methylation acts is thought to play a role in transcriptional repression through HP1 protein recruitment to methylated histones. targetId GeneCard:SETDB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SETDB1 validation Human_-_SETDB1_(sc-66884)(Immunoprecipitation,Western_blot,ChIP-seq):human_SETDB1_SC-66884_validation_Farnham.pdf vendorId sc-66884 vendorName Santa Cruz Biotechnology term SIN3A_(NB600-1263) tag SIN3ANB6001263 type Antibody label SIN3A (NB600-1263) antibodyDescription Rabbit polyclonal, Immunogen: Synthetic peptide: MKRRLDDQESDVYAAQQRR, corresponding to amino acids 1-19 of Mouse mSin3A. Antibody Target: SIN3A (NB600-1263) lab Snyder lots LB140235 orderUrl http://www.novusbio.com/mSin3A-Antibody_NB600-1263.html target SIN3A targetClass HISase targetDescription Mammalian Sin 3 (mSin 3) is closely related to the yeast SIN3 repressor protein involved in the transcriptional repression of many genes. Containing 4 paired amphipathic helix domains (PAH domains), mSin 3A and mSin 3B have been shown to directly interact with several other transcriptional repressor proteins including HDAC 1, HDAC 2, RbAp 46, the methyl CpG binding protein MeCP 2, the Mad/Max heterodimer, and the corepressors silencing mediator of retinoic acid & thyroid hormone receptor (SMRT) and nuclear receptor corepressor (N-CoR). targetId GeneCard:SIN3A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SIN3A validation Human_-_SIN3A_(NB600-1263)(Immunoprecipitation,ChIP-seq):human_SIN3A_NB600-1263_validation_Snyder.pdf Mouse_-_SIN3A_(NB600-1263)(Immunoprecipitation):mouse_SIN3A_NB600-1263_validation_Snyder.pdf vendorId NB600-1263 vendorName Novus Biologicals term Sin3Ak-20 tag SIN3AK20 type Antibody label SIN3AK20 (sc-994) antibodyDescription Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20 lab Myers lots F1005 orderUrl http://www.scbt.com/product.php?datasheet=994 target SIN3AK20 targetClass HISase targetDescription Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2 targetId GeneCard:SIN3A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SIN3A validation Human_-_Sin3Ak-20(Immunoprecipitation-Western_blot,IP-MassSpec):human_Sin3Ak-20_validation_Myers.pdf vendorId sc-994 vendorName Santa Cruz Biotechnology term SIRT6 tag SIRT6 type Antibody label SIRT6 (ab48192) antibodyDescription Rabbit polyclonal. Antibody Target: SIRT6 lab Struhl orderUrl http://www.abcam.com/SIRT6-antibody-ab48192.html target SIRT6 targetClass HISase targetDescription A synthetic peptide made to an internal region of the human SIRT6 protein targetId GeneCard:SIRT6 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SIRT6 validation Human_-_SIRT6(ab48192)(Western_blot,siRNA):human_SIRT6_ab48192_validation_Struhl.pdf vendorId ab48192 vendorName abcam term SIRT6_(ab62739) tag SIRT6AB62739 type Antibody label SIRT6 (ab62739) antibodyDescription Rabbit polyclonal affinity purified, raised against a synthetic peptide: GLPEIFDPPEELERK conjugated to KLH by a Cysteine residue linker, corresponding to N terminal amino acids 19-33 of Human SIRT6 lab Bernstein lots GR24519-2 orderUrl http://www.abcam.com/SIRT6-antibody-ab62739.html target SIRT6 targetClass HISase targetDescription NAD-dependent protein deacetylase. Has deacetylase activity towards Lys-9 and Lys-56 of histone H3. Modulates acetylation of histone H3 in telomeric chromatin during the S-phase of the cell cycle. Deacetylates Lys-9 of histone H3 at NF-kappa-B target promoters and may down-regulate the expression of a subset of NF-kappa-B target genes. targetId GeneCard:SIRT6 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SIRT6 validation Human_-_SIRT6_(ab62739)(ChIP-seq,Western_blot):human_SIRT6_ab62739_validation_Bernstein.pdf vendorId ab62739 vendorName abcam term SIX5 tag SIX5 type Antibody label SIX5 (sc-55706) antibodyDescription Goat polyclonal IgG. Six5 (K-20) Epitope mapping near the C-terminus of Six5 of human origin. Antibody Target: SIX5 lab Myers lots B1408 orderUrl http://www.scbt.com/datasheet-55706-six5-k-20-antibody.html target SIX5 targetClass TFSS targetDescription The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2. targetId GeneCard:SIX5 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SIX5 validation Human_-_SIX5(Western_blot,IP-MassSpec):human_SIX5_validation_Myers.pdf vendorId sc-55706 vendorName Santa Cruz Biotechnology term SLBP tag SLBP type Antibody label SLBP (06-1376) antibodyDescription Rabbit polyclonal. Antibody Target: SLBP lab Tenenbaum lots NRG1691091 orderUrl http://www.millipore.com/catalogue/item/06-1376 target SLBP targetDescription Stem-loop binding protein (Homo sapiens) targetId GeneCard:SLBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SLBP validation Human_-_SLBP(Immunoprecipitation,Western_blot):human_SLBP_validation_Tenenbaum.pdf vendorId 06-1376 vendorName Millipore term SMC3_(ab9263) tag SMC3 type Antibody label SMC3 (ab9263) antibodyDescription Rabbit polyclonal affinity purified raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3 lab Snyder lots 963667 orderUrl http://www.abcam.com/SMC3-antibody-ab9263.html target SMC3 targetDescription Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. targetId GeneCard:SMC3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SMC3 validation Human_-_SMC3(Immunoprecipitation,ChIP-seq):human_SMC3_validation_Snyder.pdf Mouse_-_SMC3(Immunoprecipitation,ChIP-seq):mouse_SMC3_validation_Snyder.pdf vendorId ab9263 vendorName abcam term SP1 tag SP1 type Antibody label SP1 (sc-17824) antibodyDescription Mouse monoclonal. Sp1(E-3) is raised against amino acids 121-345 mapping near the N-terminus of Sp1 of human origin. Antibody Target: SP1 lab Myers lots K1907 orderUrl http://www.scbt.com/datasheet-17824-sp1-e-3-antibody.html target SP1 targetClass TFSS targetDescription SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter. targetId GeneCard:SP1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SP1 validation Human_-_SP1(Immunoprecipitation-Western_blot,IP-MassSpec):human_SP1_validation_Myers.pdf vendorId sc-17824 vendorName Santa Cruz Biotechnology term SP2_(SC-643) tag SP2 type Antibody label SP2 (sc-643) antibodyDescription Rabbit polyclonal IgG, epitope mapping near the N-terminus of SP2 of human origin. Antibody Target: SP2 lab Myers lots K1803 orderUrl http://www.scbt.com/datasheet-643-sp2-k-20-antibody.html target SP2 targetClass TFSS targetDescription This gene encodes a member of the Sp subfamily of Sp/XKLF transcription factors. Sp family proteins are sequence-specific DNA-binding proteins characterized by an amino-terminal trans-activation domain and three carboxy-terminal zinc finger motifs. This protein contains the least conserved DNA-binding domain within the Sp subfamily of proteins, and its DNA sequence specificity differs from the other Sp proteins. It localizes primarily within subnuclear foci associated with the nuclear matrix, and can activate or in some cases repress expression from different promoters. (provided by RefSeq) targetId GeneCard:SP2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SP2 validation Human_-_:missing vendorId sc-643 vendorName Santa Cruz Biotechnology term SP4_(V-20) tag SP4V20 type Antibody label SP4 (sc-645) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of Sp4 of human origin. Antibody Target: SP4 lab Myers lots F2609 orderUrl http://www.scbt.com/datasheet-645-sp4-v-20-antibody.html target SP4 targetDescription Binds to GT and GC boxes promoters elements. Probable transcriptional activator. targetId GeneCard:SP4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SP4 validation Human_-_SP4_V-20(Immunoblot):human_SP4_V-20_validation_Myers.pdf vendorId sc-645 vendorName Santa Cruz Biotechnology term SPT20 tag SPT20 type Antibody label SPT20/FAM48A (3006) antibodyDescription Rabbit polyclonal anti-SPT20 antibody (3006), Immunogen: C-terminal region of mSPT20 (330-531 aa) is cloned in pET28b and over expressed in E. Coli. Protein was purified on Ni-NTA exchange column. Sequence: mSPT20 (330-531 amino acids). Antibody Target: FAM48A lab Struhl orderUrl http://www.igbmc.fr target FAM48A targetClass HISase targetDescription Also known as FAM48A or P38IP. It is a component of SAGA complex. Required for MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) activation during gastrulation. Required for down-regulation of E-cadherin during gastrulation by regulating E-cadherin protein level downstream from NCK-interacting kinase (NIK) and independently of the regulation of transcription by Fgf signaling and Snail. targetId GeneCard:FAM48A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=FAM48A validation Human_-_:missing vendorId SPT20 (3006) vendorName Dr. Lazlo Tora at Institut de Gènètique et de Biologie Molèculaire et Cellulaire term SREBP1 tag SREBP1 type Antibody label SREBP1 (sc-8984) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: SREBP1 lab Snyder lots 10211 orderUrl http://www.scbt.com/product.php?datasheet=8984 target SREBP1 targetClass TFSS targetDescription Sterol regulatory element binding transcription factor 1 targetId GeneCard:SREBF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SREBF1 validation Human_-_SREBP1_(sc-8984)(Western_blot,IP-MassSpec):human_SREBP1_validation_Snyder.pdf vendorId sc-8984 vendorName Santa Cruz Biotechnology term SREBP2 tag SREBP2 type Antibody label SREBP2 (10007663) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: SREBP2 lab Snyder lots 0424883-1 orderUrl http://www.caymanchem.com/app/template/Product.vm/catalog/10007663 target SREBP2 targetClass TFSS targetDescription Sterol regulatory element binding transcription factor 2 targetId GeneCard:SREBF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SREBF2 validation Human_-_SREBP2_(10007663)(Western_blot,IP-MassSpec):human_SREBP2_validation_Snyder.pdf vendorId 10007663 vendorName Cayman Chemical term SRF tag SRF type Antibody label SRF (sc-335) antibodyDescription Rabbit polyclonal. Antibody Target: SRF lab Myers, Wold lots F3006 L2005 H2604 orderUrl http://www.scbt.com/product.php?datasheet=335 target SRF targetClass TFSS targetDescription Serum response transcription factor targetId GeneCard:SRF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SRF validation Human_-_SRF(Immunoprecipitation-Western_blot,IP-MassSpec):human_SRF_validation_Myers.pdf Mouse_-_:missing vendorId sc-335 vendorName Santa Cruz Biotechnology term STAT1 tag STAT1 type Antibody label STAT1 (sc-345) antibodyDescription Rabbit polyclonal affinity purified to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1 lab Snyder lots G2406 K2106 D2908 orderUrl http://www.scbt.com/product.php?datasheet=345 target STAT1 targetClass TFSS targetDescription transcription factor, activated by interferon signalling targetId GeneCard:STAT1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=STAT1 validation Human_-_STAT1(Western_blot,Motif_Enrichment):human_STAT1_validation_Snyder.pdf vendorId sc-345 vendorName Santa Cruz Biotechnology term STAT2 tag STAT2 type Antibody label STAT2 (sc-476X) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: STAT2 lab Snyder lots B1908 orderUrl http://www.scbt.com/product.php?datasheet=476 target STAT2 targetClass TFSS targetDescription peptide mapping at c-terminus of Human STAT2 p-113 (C-20) X targetId GeneCard:STAT2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=STAT2 validation Human_-_STAT2(Immunoprecipitation,ChIP-seq):human_STAT2_validation_Snyder.pdf vendorId sc-476X vendorName Santa Cruz Biotechnology term STAT3 tag STAT3 type Antibody label STAT3 (sc-482) antibodyDescription Rabbit polyclonal affinity purified. Epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3 lab Snyder lots B0111 orderUrl http://www.scbt.com/datasheet-482-stat3-c-20-antibody.html target STAT3 targetClass TFSS targetDescription Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis. targetId GeneCard:STAT3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=STAT3 validation Human_-_STAT3(Immunoprecipitation,IP-MassSpec):human_STAT3_validation_Snyder.pdf vendorId sc-482 vendorName Santa Cruz Biotechnology term STAT5A_(SC-74442) tag STAT5ASC74442 type Antibody label STAT5A (sc-74442) antibodyDescription Mouse monoclonal IgG. Antibody Target: STAT5A lab Myers lots G0208 orderUrl http://www.scbt.com/datasheet-74442-stat5-a-9-antibody.html target STAT5A targetDescription The protein encoded by this gene is a member of the STAT family of transcription factors. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein is activated by, and mediates the responses of many cell ligands, such as IL2, IL3, IL7 GM-CSF, erythropoietin, thrombopoietin, and different growth hormones. Activation of this protein in myeloma and lymphoma associated with a TEL/JAK2 gene fusion is independent of cell stimulus and has been shown to be essential for the tumorigenesis. The mouse counterpart of this gene is found to induce the expression of BCL2L1/BCL-X(L), which suggests the antiapoptotic function of this gene in cells. (provided by RefSeq) targetId GeneCard:STAT5A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=STAT5A validation Human_-_STAT5A_(sc-74442)(Western_blot,IP-MassSpec):human_STAT5A_SC-74442_validation_Myers.pdf vendorId sc-74442 vendorName Santa Cruz Biotechnology term SUZ12_(05-1317) tag SUZ12051317 type Antibody label SUZ12 (05-1317) antibodyDescription Mouse monoclonal A/G affinity purified recombinant protein corresponding to human SUZ12. Antibody Target: SUZ12 lab Bernstein lots NRG1665726 orderUrl http://www.millipore.com/catalogue/item/05-1317&open&cid=BIOS-A-BIOC-2538-1102-RC target SUZ12 targetClass HISase targetDescription SUZ12 is a polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. This protein is component of the PRC2 complex, which methylates Lys-9 and Lys-27 residues of histone H3. targetId GeneCard:SUZ12 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SUZ12 validation Human_-_SUZ12_(05-1317)(Western_blot,ChIP-seq):human_SUZ12_validation_Bernstein.pdf vendorId 05-1317 vendorName Millipore term SUZ12 tag SUZ12 type Antibody label SUZ12 (SUZ12) antibodyDescription Rabbit polyclonal A/G affinity purified. Antibody Target: SUZ12 lab Farnham orderUrl http://pibbs.usc.edu/faculty/profile/?fid=205 target SUZ12 targetClass HISase targetDescription Suppressor of zeste 12 homolog, Polycomb group (PcG) protein, Component of the PRC2/EED-EZH2 complex targetId GeneCard:SUZ12 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=SUZ12 validation Human_-_SUZ12_(Western_blot,ChIP-seq):human_SUZ12_validation_Farnham.pdf vendorId SUZ12 vendorName Dr. Peggy Farnham at USC term T7Tag tag T7 type Antibody label T7Tag (AB3790) antibodyDescription Rabbit polyclonal affinity purified Anti-t7 Epitope tag, T7 (MASMTGGQQMG) from Millipore. Antibody Target: T7Tag lab Tenenbaum lots NOV_69522 orderUrl http://www.millipore.com/catalogue/item/ab3790 target T7Tag targetDescription T7 (MASMTGGQQMG) targetId Negative Control targetUrl http://www.millipore.com/catalogue/item/ab3790 validation Human_-_T7-Tag_(Negative_Control):human_T7tag_validation_Tenenbaum.pdf vendorId AB3790 vendorName Millipore term TAF1 tag TAF1 type Antibody label TAF1 (sc-735) antibodyDescription Mouse monoclonal (p250). Antibody Target: TAF1 lab Myers, Wold lots K0905 F2706 G2909 orderUrl http://www.scbt.com/product.php?datasheet=735 target TAF1 targetClass TFNS targetDescription TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250. targetId GeneCard:TAF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TAF1 validation Human_-_TAF1(ChIP-seq,IP-MassSpec):human_TAF1_validation_Myers.pdf vendorId sc-735 vendorName Santa Cruz Biotechnology term TAF7_(SC-101167) tag TAF7 type Antibody label TAF7 (sc-101167) antibodyDescription Mouse monoclonal IgG, raised against recombinant TAF II p55 (TAF7) of human origin. Antibody Target: TAF7 lab Myers lots J1509 orderUrl http://www.scbt.com/datasheet-101167-taf-ii-p55-sq-8-antibody.html target TAF7 targetClass TFNS targetDescription The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II (RefSeq). targetId GeneCard:TAF7 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TAF7 validation Human_-_TAF7_(sc-101167)(Immunoprecipitation-Western_blot,IP-MassSpec):human_TAF7_SC-101167_validation_Myers.pdf vendorId sc-101167 vendorName Santa Cruz Biotechnology term TAL1_(SC-12984) tag TAL1 type Antibody label TAL1 (sc-12984) antibodyDescription Goat polyclonal antibody affinity purified; epitope mapping at the C-terminus of TAL1 of human origin. Antibody Target: TAL1 lab Hardison, Snyder lots J2209 orderUrl http://www.scbt.com/datasheet-12984-tal1-c-21-antibody.html target TAL1 targetClass TFSS targetDescription TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis. targetId GeneCard:TAL1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TAL1 validation Human_-_TAL1(Immunoprecipitation,IP-MassSpec):human_TAL1_validation_Snyder.pdf Mouse_-_TAL1(Western_blot):mouse_TAL1_validation_Hardison.pdf vendorId sc-12984 vendorName Santa Cruz Biotechnology term TBLR1_(ab24550) tag TBLR1AB24550 type Antibody label TBLR1 (ab24550) antibodyDescription Rabbit polyclonal, immunogen: Recombinant full length protein (Human). Antibody Target: TBL1XR1 lab Snyder lots GR340121 orderUrl http://www.abcam.com/TBLR1-antibody-ChIP-Grade-ab24550.html target TBL1XR1 targetDescription F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation. targetId GeneCard:TBL1XR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TBL1XR1 validation Human_-_TBLR1_(ab24550)(Immunoprecipitation,ChIP-seq):human_TBLR1_ab24550_validation_Snyder.pdf vendorId ab24550 vendorName abcam term TBLR1_(NB600-270) tag TBLR1NB600270 type Antibody antibodyDescription Rabbit polyclonal affinity purified, immunogen: A synthetic peptide that maps to a region between residues 100 and 150 of human TBL1-related Protein 1 using the numbering given in SwissProt entry Q9BZK7. Antibody Target: TBL1XR1 lab Snyder lots 1 orderUrl http://www.novusbio.com/TBLR1-Antibody_NB600-270.html target TBL1XR1 targetDescription F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation. targetId GeneCard:TBL1XR1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TBL1XR1 validation Human_-_TBLR1_(NB600-270)(Immunoprecipitation,ChIP-seq):human_TBLR1_NB600-270_validation_Snyder.pdf vendorId NB600-270 vendorName Novus Biologicals term TBP tag TBP type Antibody label TBP (ab62126) antibodyDescription Mouse monoclonal affinity purified. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP lab Snyder orderUrl http://www.abcam.com/TATA-binding-protein-TBP-antibody-mAbcam-62126-Nuclear-Loading-Control-and-ChIP-Grade-ab62126.html target TBP targetClass TFNS targetDescription General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. targetId GeneCard:TBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TBP validation Human_-_TBP(Immunoblot):human_TBP_validation_Snyder.pdf Mouse_-_TBP_(ab62126)(Immunoprecipitation):mouse_TBP_validation_Snyder.pdf vendorId ab62126 vendorName abcam term TBP_(sc-273) tag TBPSC273 type Antibody label TBP (sc-273) antibodyDescription Rabbit polyclonal A/G affinity purified, raised against full length TFIID of human origin. Antibody Target: TBP lab Struhl orderUrl http://www.scbt.com/datasheet-273-tfiid-tbp-si-1-antibody.html target TBP targetClass TFNS targetDescription TBP is an integral subunit of the TFIID complex. TBP recognizes the TATA box and helps to recruit and orient the RNA poymerase II initiation complex and RNA polymerase III. targetId GeneCard:TBP targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TBP validation Human_-_TBP_(sc-273)(Western_blot,Immunoprecipitation):human_TBP_sc-273_validation_Struhl.pdf vendorId sc-273 vendorName Santa Cruz Biotechnology term TCF12 tag TCF12 type Antibody label TCF12 (sc-357) antibodyDescription Rabbit polyclonal IgG HEB (A-20) Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12 lab Myers lots F2305 orderUrl http://www.scbt.com/datasheet-357-heb-a-20-antibody.html target TCF12 targetClass TFSS targetDescription The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. targetId GeneCard:TCF12 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF12 validation Human_-_TCF12(Immunoprecipitation-Western_blot,IP-MassSpec):human_TCF12_validation_Myers.pdf Mouse_-_:missing vendorId sc-357 vendorName Santa Cruz Biotechnology term TCF3_(SC-349) tag TCF3 type Antibody label TCF3 (sc-349) antibodyDescription Rabbit polyclonal. E2A.E12(V-18) is an affinity purified antibody raised against a peptide mapping at the C-terminus of E2A.E12 of human origin. Antibody Target: TCF3 lab Myers lots A1111 D2611 orderUrl http://www.scbt.com/datasheet-349-e2a-e12-v-18-antibody.html target TCF3 targetDescription Heterodimers between TCF3 and tissue-specific basic helix-loop-helix (bHLH) proteins play major roles in determining tissue-specific cell fate during embryogenesis, like muscle or early B-cell differentiation. Dimers bind DNA on E-box motifs: 5'-CANNTG-3'. Binds to the kappa-E2 site in the kappa immunoglobulin gene enhancer. targetId GeneCard:TCF3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF3 validation Human_-_TCF3_(sc-349)(Western_blot,IP-MassSpec):human_TCF3_SC-349_validation_Myers.pdf Mouse_-_:missing vendorId sc-349 vendorName Santa Cruz Biotechnology term TCF4 tag TCF4 type Antibody label TCF4 (2569S) antibodyDescription Rabbit monoclonal. Antibody Target: TCF4 deprecated same as TCF7L2 lab Farnham orderUrl http://www.cellsignal.com/products/2569.html target TCF7L2 targetDescription TCF4 (now known as TCF7L2) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4. Note: there is an official TCF-4 http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF4 targetId GeneCard:TCF7L2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF7L2 validation Human-_-:missing vendorId 2569S vendorName Cell Signaling Technology term TCF7L2 tag TCF7L2 type Antibody label TCF7L2 (2569) antibodyDescription Rabbit monoclonal affinity purified. Antibody Target: TCF7L2 lab Farnham lots 2 orderUrl http://www.cellsignal.com/products/2569.html target TCF7L2 targetClass TFSS targetDescription TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4. Note: there is an official TCF-4 http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF4 targetId GeneCard:TCF7L2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF7L2 validation Human_-_TCF7L2(Immunoprecipitation,ChIP-seq):human_TCF7L2_validation_Farnham.pdf vendorId 2569 vendorName Cell Signaling Technology term TCF7L2_C9B9_(2565) tag TCF7L2C9B92565 type Antibody label TCF7L2 C9B9 (2565) antibodyDescription Rabbit monoclonal antibody affinity purified is produced by immunizing animals with a synthetic peptide corresponding to residues surrounding Glu81 of human TCF7L2. Antibody Target: TCF7L2 lab Farnham lots 3 orderUrl http://www.cellsignal.com/products/2565.html target TCF7L2 targetClass TFSS targetDescription TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4. Note: there is an official TCF-4 http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF4 targetId GeneCard:TCF7L2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF7L2 validation Human_-_TCF7L2_C9B9_(2565)(Immunoprecipitation,ChIP-seq):human_TCF7L2_C9B9_2565_validation_Farnham.pdf vendorId 2565 vendorName Cell Signaling Technology term TEAD4_(SC-101184) tag TEAD4SC101184 type Antibody label TEAD4 (sc-101184) antibodyDescription Mouse monoclonal IgG, raised against recombinant protein TEF-3 (TEAD4) of human origin. Antibody Target: TEAD4 lab Myers lots A1811 orderUrl http://www.scbt.com/datasheet-101184-tef-3-n-g2-antibody.html target TEAD4 targetDescription Member of the transcriptional enhancer factor (TEF) family of transcription factors, which contain the TEA/ATTS DNA-binding domain. It is preferentially expressed in the skeletal muscle, and binds to the M-CAT regulatory element found in promoters of muscle-specific genes to direct their gene expression. targetId GeneCard:TEAD4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TEAD4 validation Human_-_TEAD4_(sc-101184)(Western_blot,IP-MassSpec):human_TEAD4_SC-101184_validation_Myers.pdf vendorId sc-101184 vendorName Santa Cruz Biotechnology term TFIIIC-110 tag TF3C110 type Antibody label TFIIIC-110 (4286) antibodyDescription Rabbit polyclonal. Antiserum 4286 was raised by immunizing rabbits with synthetic peptide RPGFSPTSHRLLPTP (human TFIIIC110 residues 897 to 911) coupled to keyhole limpet hemocyanin. Antibody Target: GTF3C2 lab Struhl orderUrl http://www.beatson.gla.ac.uk/ target GTF3C2 targetClass Pol3F targetDescription TFIIIC-110 is a subunit of the RNA Polymerase III transcription factor TFIIIC. targetId GeneCard:GTF3C2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=GTF3C2 validation Human_-_TFIIIC-110(4286)(IP-MassSpec,Correlation):human_TFIIIC-110_4286_validation_Struhl.pdf vendorId TFIIIC-110 4286 vendorName Dr. Robert J. White at Beatson Institute for Cancer Research term THAP1_(SC-98174) tag THAP1 type Antibody label THAP1 (sc-98174) antibodyDescription Goat polyclonal IgG, epitope mapping near the C-terminus of THAP1 of human origin. Antibody Target: THAP1 lab Myers lots D1910 orderUrl http://www.scbt.com/datasheet-98174-thap1-c-18-antibody.html target THAP1 targetClass TFSS targetDescription The protein encoded by this gene contains a THAP domain, a conserved DNA-binding domain. This protein colocalizes with the apoptosis response protein PAWR/PAR-4 in promyelocytic leukemia (PML) nuclear bodies, and functions as a proapoptotic factor that links PAWR to PML nuclear bodies. Alternatively spliced transcript variants encoding distinct isoforms have been observed. (provided by RefSeq) targetId GeneCard:THAP1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=THAP1 validation Human_-_:missing vendorId sc-98174 vendorName Santa Cruz Biotechnology term TP53_(SC-126) tag TP53SC126 type Antibody label TP53 (sc-126) antibodyDescription Mouse monoclonal IgG, N-terminal epitope mapping between amino acids 11-25 of TP53 of human origin. Antibody Target: TP53 lab Myers lots F0909 orderUrl http://www.scbt.com/datasheet-126-p53-do-1-antibody.html target TP53 targetDescription This gene encodes tumor protein p53, which responds to diverse cellular stresses to regulate target genes that induce cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. p53 protein is expressed at low level in normal cells and at a high level in a variety of transformed cell lines, where it's believed to contribute to transformation and malignancy. p53 is a DNA-binding protein containing transcription activation, DNA-binding, and oligomerization domains. It is postulated to bind to a p53-binding site and activate expression of downstream genes that inhibit growth and/or invasion, and thus function as a tumor suppressor. Mutants of p53 that frequently occur in a number of different human cancers fail to bind the consensus DNA binding site, and hence cause the loss of tumor suppressor activity. Alterations of this gene occur not only as somatic mutations in human malignancies, but also as germline mutations in some cancer-prone families with Li-Fraumeni syndrome. Multiple p53 variants due to alternative promoters and multiple alternative splicing have been found. These variants encode distinct isoforms, which can regulate p53 transcriptional activity. (provided by RefSeq) targetId GeneCard:TP53 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TP53 validation Human_-_TP53_(sc-126)(Western_blot,IP-MassSpec):human_TP53_sc-126_validation_Myers.pdf vendorId sc-126 vendorName Santa Cruz Biotechnology term TR4 tag TR4 type Antibody label TR4 antibodyDescription Rabbit polyclonal affinity purified Anti-TR4. Antibody Target: NR2C2 lab Farnham orderUrl https://www.umms.med.umich.edu/facultysearch/facultyPage.do?facUniqname=engel target NR2C2 targetClass TFSS targetDescription (Also: NR2C2) Members of the nuclear hormone receptor family, such as NR2C2, act as ligand-activated transcription factors. The proteins have an N-terminal transactivation domain, a central DNA-binding domain with 2 zinc fingers, and a ligand-binding domain at the C terminus. targetId GeneCard:NR2C2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=NR2C2 validation Human_-_TR4_(Western_blot,ChIP-seq):human_TR4_validation_Farnham.pdf vendorId TR4 vendorName Dr. J.D. Engel at University of Michigan term TRIM28_(SC-81411) tag TRIM28SC81411 type Antibody label TRIM28 (sc-81411) antibodyDescription Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of TRIM28 of human origin. Antibody Target: TRIM28 lab Myers lots L0309 orderUrl http://www.scbt.com/datasheet-81411-tif1beta-tri5i093-antibody.html target TRIM28 targetClass HISase targetDescription The protein encoded by this gene mediates transcriptional control by interaction with the Kruppel-associated box repression domain found in many transcription factors. The protein localizes to the nucleus and is thought to associate with specific chromatin regions. The protein is a member of the tripartite motif family. This tripartite motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. (provided by RefSeq) targetId GeneCard:TRIM28 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRIM28 validation Human_-_TRIM28_(sc-81411)(Western_blot,IP-MassSpec):human_TRIM28_sc-81411_validation_Myers.pdf vendorId sc-81411 vendorName Santa Cruz Biotechnology term TRIM37_(SC-49548) tag TRIM37 type Antibody label TRIM37 (sc-49548) antibodyDescription Goat polyclonal IgG raised against a peptide mapping at the C-terminus of TRIM37 of human origin. Antibody Target: TRIM37 lab Myers lots F2507 orderUrl http://www.scbt.com/datasheet-49548-trim37-c-15-antibody.html target TRIM37 targetDescription This gene encodes a member of the tripartite motif (TRIM) family, whose members are involved in diverse cellular functions such as developmental patterning and oncogenesis. The TRIM motif includes zinc-binding domains, a RING finger region, a B-box motif and a coiled-coil domain. The RING finger and B-box domains chelate zinc and might be involved in protein-protein and/or protein-nucleic acid interactions. The gene mutations are associated with mulibrey (muscle-liver-brain-eye) nanism, an autosomal recessive disorder that involves several tissues of mesodermal origin. Alternatively spliced transcript variants encoding the same protein have been identified. (provided by RefSeq) targetId GeneCard:TRIM37 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRIM37 validation Human_-_TRIM37_(sc-49548)(Western_blot,IP-MassSpec):human_TRIM37_SC-49548_validation_Myers.pdf vendorId sc-49548 vendorName Santa Cruz Biotechnology term UBF_(sc-13125) tag UBFSC13125 type Antibody label UBF (sc-13125) antibodyDescription Mouse monoclonal. UBF (F-9) is raised against amino acids 1-220 of UBF of human origin. Antibody Target: UBTF lab Snyder lots B1804 orderUrl http://www.scbt.com/datasheet-13125-ubf-f-9-antibody.html target UBTF targetDescription Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes targetId GeneCard:UBTF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=UBTF validation Human_-_UBF_(sc-13125)(Immunoprecipitation,ChIP-seq):human_UBF_sc-13125_validation_Snyder.pdf Mouse_-_UBF_(sc-13125)(Immunoprecipitation,ChIP-seq):mouse_UBF_validation_Snyder.pdf vendorId sc-13125 vendorName Santa Cruz Biotechnology term UBTF_(SAB1404509) tag UBTFSAB1404509 type Antibody label UBTF (SAB1404509) antibodyDescription Mouse monoclonal, immunogen:UBTF (NP_055048, 551 a.a. ~ 651 a.a) partial recombinant protein with GST tag. Antibody Target: UBTF lab Snyder lots 07219-A2 orderUrl http://www.sigmaaldrich.com/catalog/ProductDetail.do?D7=0&N5=SEARCH_CONCAT_PNO%7CBRAND_KEY&N4=SAB1404509%7CSIGMA&N25=0&QS=ON&F=SPEC target UBTF targetDescription Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes targetId GeneCard:UBTF targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=UBTF validation Human_-_UBTF_(SAB1404509)(Immunoprecipitation,ChIP-seq):human_UBTF_SAB1404509_validation_Snyder.pdf vendorId SAB1404509 vendorName Sigma-Aldrich term USF-1 tag USF1 type Antibody label USF1 (sc-229) antibodyDescription Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1 lab Myers lots A2109 orderUrl http://www.scbt.com/product.php?datasheet=229 target USF1 targetClass TFSS targetDescription The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types. targetId GeneCard:USF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=USF1 validation Human_-_USF1_SC-229(Immunoprecipitation-Western_blot,IP-MassSpec):human_USF1_SC-229_validation_Myers.pdf Mouse_-_:missing vendorId sc-229 vendorName Santa Cruz Biotechnology term USF1_(SC-8983) tag USF1b type Antibody label USF1 (sc-8983) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to a.a. 75-160 mapping within internal region of USF1 of human origin. Antibody Target: USF1 lab Myers lots E2810 orderUrl http://www.scbt.com/datasheet-8983-usf-1-h-86-antibody.html target USF1 targetClass TFSS targetDescription This gene encodes a member of the basic helix-loop-helix leucine zipper family, and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. This gene has been linked to familial combined hyperlipidemia (FCHL). Two transcript variants encoding distinct isoforms have been identified for this gene. (provided by RefSeq). targetId GeneCard:USF1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=USF1 validation Human_-_USF1_SC-8983(Immunoprecipitation-Western_blot,IP-MassSpec):human_USF1_SC-8983_validation_Myers.pdf vendorId sc-8983 vendorName Santa Cruz Biotechnology term USF2 tag USF2 type Antibody label USF2 (ab60931) antibodyDescription Mouse monoclonal A/G affinity purified. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2 lab Snyder lots 424648 orderUrl http://www.abcam.com/USF2-antibody-ab60931.html target USF2 targetClass TFSS targetDescription Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3'). targetId GeneCard:USF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=USF2 validation Human_-_USF2(Immunoprecipitation,Motif_Enrichment):human_USF2_validation_Snyder.pdf Mouse_-_USF2_(ab60931)(Immunoprecipitation,Motif_Enrichment):mouse_USF2_validation_Snyder.pdf vendorId ab60931 vendorName abcam term USF2_(C-20) tag USF2b type Antibody label USF2 (sc-862) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of USF-2 of mouse origin. Antibody Target: USF2 lab Myers lots J0908 orderUrl http://www.scbt.com/datasheet-862-usf-2-c-20-antibody.html target USF2 targetClass TFSS targetDescription This gene encodes a member of the basic helix-loop-helix leucine zipper family, and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. Two transcript variants encoding distinct isoforms have been identified for this gene (RefSeq). targetId GeneCard:USF2 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=USF2 validation Human_-_USF2_(C-20)(Immunoblot):human_USF2_C-20_validation_Myers.pdf vendorId sc-862 vendorName Santa Cruz Biotechnology term WHIP tag WHIP type Antibody label WHIP (ab4731) antibodyDescription Rabbit polyclonal affinity purified. Immunogen: (Synthetic peptide) SRESYDAPPTPSGAC conjugated to KLH, corresponding to amino acids 107-120 of Human WHIP. Antibody Target: WRNIP1 lab Snyder orderUrl http://www.abcam.com/WHIP-antibody-ab4731.html target WRNIP1 targetClass DNARep targetDescription Interacts with the N-terminal portion of Werner protein containing the exonuclease domain, shows homology to replication factor C family proteins, and is conserved from E. coli to human. Studies in yeast suggest that this gene may influence the aging process. Functions as a modulator for initiation or reinitiation events during DNA polymerase delta-mediated DNA synthesis. Has an intrinsic ATPase activity that functions as a sensor of DNA damage or of arrested replication forks and regulates the extent of DNA synthesis. targetId GeneCard:WRNIP1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=WRNIP1 validation Human_-_WHIP_(ab4731)(Western_blot,IP-MassSpec):human_WHIP_validation_Snyder.pdf vendorId ab4731 vendorName abcam term XRCC4 tag XRCC4 type Antibody label XRCC4 (ab145) antibodyDescription Rabbit polyclonal. Antibody Target: XRCC4 lab Snyder orderUrl http://www.abcam.com/index.html?datasheet=145 target XRCC4 targetClass DNARep targetDescription Recognizes the XRCC4 protein (X ray cross complementation protein). XRCC4 is a ubiquitous protein reported to have a role in DNA double-stranded break repair and in V(D)J recombination. targetId GeneCard:XRCC4 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=XRCC4 validation Human_-_XRCC4(Immunoblot):human_XRCC4_validation_Snyder.pdf vendorId ab145 vendorName abcam term YY1 tag YY1 type Antibody label YY1 (sc-1703) antibodyDescription Rabbit polyclonal affinity purified. Antibody Target: YY1 lab Farnham, Myers lots B1710 J1909 orderUrl http://www.scbt.com/product.php?datasheet=1703 target YY1 targetClass TFSS targetDescription YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins. targetId GeneCard:YY1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=YY1 validation Human_-_YY1_(sc-1703)(Western_blot,IP-MassSpec):human_YY1_sc-1703_validation_Farnham.pdf Human_-_YY1_(sc-1703)(Western_blot,IP-MassSpec):human_YY1_sc-1703_validation_Myers.pdf vendorId sc-1703 vendorName Santa Cruz Biotechnology term YY1_(SC-281) tag YY1SC281 type Antibody label YY1 (sc-281) antibodyDescription Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1 lab Myers lots B1010 F2810 orderUrl http://www.scbt.com/product.php?datasheet=281 target YY1 targetClass TFSS targetDescription YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1 targetId GeneCard:YY1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=YY1 validation Human_-_YY1_(sc-281)(Immunoprecipitation-Western_blot,IP-MassSpec):human_YY1_SC-281_validation_Myers.pdf vendorId sc-281 vendorName Santa Cruz Biotechnology term ZBTB33 tag ZBTB33 type Antibody label ZBTB33 (sc-23871) antibodyDescription Mouse monoclonal IgG1. Kaiso (6F8) was raised against amino acids 1-504 representing full length Kaiso of human origin. Antibody Target: ZBTB33 lab Myers lots 10308 orderUrl http://www.scbt.com/datasheet-23871-kaiso-6f8-antibody.html target ZBTB33 targetClass TFSS targetDescription KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA targetId GeneCard:ZBTB33 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZBTB33 validation Human_-_ZBTB33(Western_blot,IP-MassSpec):human_ZBTB33_6F8_validation_Myers.pdf vendorId sc-23871 vendorName Santa Cruz Biotechnology term ZBTB7A_(SC-34508) tag ZBTB7A type Antibody label ZBTB7A (sc-34508) antibodyDescription Goat polyclonal IgG, epitope mapping at the C-terminus of LRF of human origin. Antibody Target: ZBTB7A lab Myers lots H2406 orderUrl http://www.scbt.com/datasheet-34508-lrf-c-18-antibody.html target ZBTB7A targetClass TFSS targetDescription Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity). targetId GeneCard:ZBTB7A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZBTB7A validation Human_-_ZBTB7A_SC-34508(Immunoprecipitation-Western_blot,IP-MassSpec):human_ZBTB7A_SC-34508_validation_Myers.pdf vendorId sc-34508 vendorName Santa Cruz Biotechnology term ZC3H11A_(NB100-74650) tag ZC3H11ANB10074650 type Antibody antibodyDescription Rabbit polyclonal antibody affinity purified. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A. lab Snyder lots A1 orderUrl http://www.novusbio.com/ZC3H11A-Antibody_NB100-74650.html target ZC3H11A targetDescription ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized. targetId GeneCard:ZC3H11A targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZC3H11A validation Human_-_ZC3H11A_(NB100-74650)(Immunoprecipitation,IP-MassSpec):human_ZC3H11A_NB100-74650_validation_Snyder.pdf Mouse_-_ZC3H11A_(NB100-74650)(Immunoprecipitation,IP-MassSpec):mouse_ZC3H11A_validation_Snyder.pdf vendorId NB100-74650 vendorName Novus Biologicals term ZEB1_(SC-25388) tag ZEB1 type Antibody label ZEB1 (sc-25388) antibodyDescription Rabbit polyclonal IgG, epitope corresponding to amino acids 39-140 mapping near the N-terminus of ZEB1 of human origin. Antibody Target: ZEB1 lab Myers lots D2010 orderUrl http://www.scbt.com/datasheet-25388-zeb1-h-102-antibody.html target ZEB1 targetClass TFSS targetDescription This gene encodes a zinc finger transcription factor. The encoded protein likely plays a role in transcriptional repression of interleukin 2. Mutations in this gene have ben associated with posterior polymorphous corneal dystrophy-3 and late-onset Fuchs endothelial corneal dystrophy. Alternatively spliced transcript variants encoding different isoforms have been described. (provided by RefSeq). targetId GeneCard:ZEB1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZEB1 validation Human_-_ZEB1_(sc-25388)(Western_blot,IP-MassSpec):human_ZEB1_SC-25388_validation_Myers.pdf vendorId sc-25388 vendorName Santa Cruz Biotechnology term ZKSCAN1_(HPA006672) tag ZKSCAN1HPA006672 type Antibody label ZKSCAN1 (HPA006672) antibodyDescription Rabbit polyclonal affinity purified, Immunogen: Zinc finger with KRAB and SCAN domain-containing protein 1 recombinant protein epitope signature tag (PrEST). Antibody Target: ZKSCAN1 lab Snyder lots A44630 orderUrl http://www.sigmaaldrich.com/catalog/ProductDetail.do?D7=0&N5=SEARCH_CONCAT_PNO%7CBRAND_KEY&N4=HPA006672%7CSIGMA&N25=0&QS=ON&F=SPEC target ZKSCAN1 targetDescription The ZKSCAN1 gene encodes a transcriptional regulator of the KRAB (Kruppel-associated box) subfamily of zinc finger proteins, which contain repeated Cys2-His2 (C2H2) zinc finger domains that are connected by conserved sequences, called H/C links. Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both normal and abnormal cellular proliferation and differentiation. targetId GeneCard:ZKSCAN1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZKSCAN1 validation Human_-_ZKSCAN1_(HPA006672)(Immunoprecipitation,IP-MassSpec):human_ZKSCAN1_HPA006672_validation_Snyder.pdf Mouse_-_ZKSCAN1_(HPA006672)(Immunoprecipitation,IP-MassSpec):mouse_ZKSCAN1_validation_Snyder.pdf vendorId HPA006672 vendorName Sigma-Aldrich term Znf143_(16618-1-AP) tag ZNF143 type Antibody label ZNF143 (16618-1-AP) antibodyDescription Rabbit polyclonal affinity purified against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: ZNF143 lab Snyder lots 8059 orderUrl http://www.ptglab.com/Products/ZNF143-Antibody-16618-1-AP.htm target ZNF143 targetClass TFSS targetDescription Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8 targetId GeneCard:ZNF143 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF143 validation Human_-_Znf143_(16618-1-AP)(Immunoprecipitation,IP-MassSpec):human_ZNF143_validation_Snyder.pdf vendorId 16618-1-AP vendorName Proteintech term ZNF-MIZD-CP1_(ab65767) tag ZNFMIZDCP1AB65767 type Antibody label ZMIZ1 (ab65767) antibodyDescription Rabbit polyclonal affinity purified against synthetic peptide conjugated to KLH derived from within residues 200 - 300 of Human Zinc finger MIZ domain-containing protein 1. Antibody Target: ZMIZ1 lab Snyder lots GR30927-1 orderUrl http://www.abcam.com/Zinc-finger-MIZ-domain-containing-protein-1-antibody-ab65767.html target ZMIZ1 targetDescription Zinc finger MIZ domain-containing protein 1 that increases ligand-dependent transcriptional activity of AR and promotes AR sumoylation. The stimulation of AR activity is dependent upon sumoylation. targetId GeneCard:ZMIZ1 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZMIZ1 validation Human_-_ZNF-MIZD-CP1_(ab65767)(Immunoprecipitation,IP-MassSpec):human_ZNF-MIZD-CP1_ab65767_validation_Snyder.pdf Mouse_-_ZMIZ1_(ab65676)(Immunoprecipitation,IP-MassSpec):mouse_ZMIZ1_validation_Snyder.pdf vendorId ab65767 vendorName abcam term ZNF217 tag ZNF217 type Antibody label ZNF217 (ZNF217) antibodyDescription Rabbit polyclonal antibody affinity purified raised against a recombinant ZNF217 protein corresponding to the 1562-2207 nucleotides from a human ZNF217 cDNA. Antibody Target: ZNF217 lab Farnham orderUrl http://stemcellcenter.berkeley.edu/PIs/yaswen.html target ZNF217 targetDescription ZNF217 is an important oncogene based on the high frequency of amplification and overexpression in many cancer types, but its molecular mode of gene regulation is poorly understood. ZNF217 has been purified in complexes that contain repressor proteins such as CtBP2, suggesting that it acts as a transcriptional repressor. ZNF217 contains seven C2H2 zinc finger domains and has been shown to bind to gene promoters targetId GeneCard:ZNF217 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF217 validation Human_-_ZNF217_(Western_blot,siRNA):human_ZNF217_validation_Farnham.pdf vendorId ZNF217 vendorName Dr. Paul Yaswen at UC Berkeley term ZNF263 tag ZNF263 type Antibody label ZNF263 (H00010127-A01) antibodyDescription Mouse polyclonal. Antibody Target: ZNF263 lab Farnham lots 08212 orderUrl http://www.novusbio.com/data_sheet/index/H00010127-A01.html target ZNF263 targetClass TFSS targetDescription ZNF263 (NP_005732, 201 a.a. ~ 299 a.a) partial recombinant protein with GST tag. targetId GeneCard:ZNF263 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF263 validation Human_-_ZNF263_(Western_blot,siRNA):human_ZNF263_validation_Farnham.pdf vendorId H00010127-A01 vendorName Novus Biologicals term ZNF274 tag ZNF274 type Antibody label ZNF274 (H00010782-A01) antibodyDescription Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Antibody Target: ZNF274 lab Farnham lots 060729QCS1 orderUrl http://www.abnova.com/products/products_detail.asp?Catalog_id=H00010782-A01 target ZNF274 targetClass TFSS targetDescription ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus. targetId GeneCard:ZNF274 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF274 validation Human_-_ZN274(Western_blot,Immunoprecipitation,siRNA):human_ZNF274_validation_Farnham.pdf vendorId H00010782-A01 vendorName Abnova term ZNF274_(M01) tag ZNF274M01 type Antibody label ZNF274 (H00010782-M01) antibodyDescription Mouse monoclonal affinity purified antibody raised against a partial recombinant ZNF274 (corresponding to amino acids 420-531 of the human ZNF274 protein). Antibody Target: ZNF274 lab Farnham lots 08064-4C12 orderUrl http://www.abnova.com/products/products_detail.asp?Catalog_id=H00010782-M01 target ZNF274 targetClass TFSS targetDescription ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor and interacts with the KAP1 corepressor complex. targetId GeneCard:ZNF274 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF274 validation Human_-_ZNF274_(M01)(Western_blot,ChIP-seq):human_ZNF274_M01_validation_Farnham.pdf vendorId H00010782-M01 vendorName Abnova term ZNF384_(HPA004051) tag ZNF384HPA004051 type Antibody label ZNF384 (HPA004051) antibodyDescription Rabbit polyclonal affinity purified generated using the immunogen: Zinc finger protein 384 recombinant protein epitope signature tag (PrEST) lab Snyder lots A57874 orderUrl http://www.sigmaaldrich.com/catalog/product/SIGMA/HPA004051?lang=en®ion=US target ZNF384 targetDescription This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7. targetId GeneCard:ZNF384 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF384 validation Human_-_ZNF384_(HPA004051)(Immunoprecipitation,IP-MassSpec):human_ZNF384_HPA004051_validation_Snyder.pdf Mouse_-_ZNF384_(HPA004051)(Immunoprecipitation,IP-MassSpec):mouse_ZNF384_validation_Snyder.pdf vendorId HPA004051 vendorName Sigma-Aldrich term ZZZ3 tag ZZZ3 type Antibody label ZZZ3 antibodyDescription Rabbit polyclonal anti-human ZZZ3, Immunogen: Synthetic peptide coupled to Ovalbumin (Name PI130, sequence CGNNNGRTTDLKQQSTRESW). Antibody Target: ZZZ3 lab Struhl orderUrl http://www.igbmc.fr target ZZZ3 targetClass TFSS targetDescription ZZZ3 contains one ZZ-type zinc finger domain. ZZ type finger domains are named because of their ability to bind two zinc ions. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions -they are most likely involved in ligand binding or molecular scaffolding. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains. targetId GeneCard:ZZZ3 targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZZZ3 validation Human_-_:missing vendorId ZZZ3 vendorName Dr. Lazlo Tora at Institut de Gènètique et de Biologie Molèculaire et Cellulaire ### mapAlgorithm : Comparing map algorithms # term human-readable map algorithm name # tag machine-readable map algorithm name, no special characters # type informs pipeline code of stanza type. Should always be mapAlgorithm # description human-readable description of the map algorithm, unclear where/if it's used # label provisional labels, same as description term NA tag NA type mapAlgorithm label No algorithm applicable description No algorithm applicable term erng32a tag ERNG32A type mapAlgorithm label erange v3.2.0alpha description erange v3.2.0alpha term erng3 tag ERNG3 type mapAlgorithm label erange v3.0 description erange v3.0 term erng3b tag ERNG3b type mapAlgorithm label erange v3.0beta description erange v3.0beta term blat34 tag BLAT34 type mapAlgorithm label blat v34 description blat v34 term bow098 tag BOW098 type mapAlgorithm label bowtie v0.981 description bowtie v0.981 term bow10 tag BOW10 type mapAlgorithm label bowtie v0.10.0 description bowtie v0.10.0 term bow125 tag BOW125 type mapAlgorithm label bowtie v0.12.5 description bowtie v0.12.5 term BB1 tag BB1 type mapAlgorithm label bowtie v0.981 followed by blat v34 description bowtie v0.981 followed by blat v34 term BB2 tag BB2 type mapAlgorithm label bowtie v0.10.0 followed by blat v34 description bowtie v0.10.0 followed by blat v34 term TH1014 tag TH1014 type mapAlgorithm label TopHat v1.0.14 description TopHat v1.0.14 term TH131 tag TH131 type mapAlgorithm label TopHat v1.3.1 description TopHat v1.3.1 ## quality # term (human-readable read type name) # tag (machine-readable read type name, no special characters) # type (informs pipeline code of stanza type. Should always be readType) # description (human-readable description of the read type, unclear where/if it's used) term caution tag QCAUTION type quality label Caution description Moderate quality; likely lower than optimal sensitivity i.e. when all replicates of a dataset have suboptimal moderate scores term good tag QGOOD type quality label Good description High quality; at least one replicate is of high quality allowing rescue OR all replicates are high quality ### readType # term (human-readable read type name) # tag (machine-readable read type name, no special characters) # type (informs pipeline code of stanza type. Should always be readType) # description (human-readable description of the read type, unclear where/if it's used) term 1x25 tag R1X25 type readType description Single 25 nt reads term 1x30 tag R1x30 type readType description Single 30 nt read term 1x32 tag R1X32 type readType description Single 32 nt reads term 1x36 tag R1X36 type readType description Single 36 nt reads term 1x41 tag R1X41 type readType description Single 41 nt reads term 1x45 tag R1X45 type readType description Single 45 nt reads term 1x50 tag R1X50 type readType description Single 50 nt reads term 1x55 tag R1X55 type readType description Single 55 nt reads term 1x75 tag R1X75 type readType description Single 75 nt reads term 1x75D tag R1X75D type readType description Single 75 nt directed reads term 1x101 tag R1X101 type readType description Single 101 nt reads term 2x36 tag R2X36 type readType description Paired 36 nt reads term 2x75 tag R2X75 type readType description Paired 75 nt reads term 2x76D tag R2X76D type readType description Paired 76 nt directed reads term 2x99D tag R2X99D type readType description Paired 99 nt directed reads term 2x100 tag R2X100 type readType description Paired 100 nt reads term 2x101D tag R2X101D type readType description Paired 101 nt directed reads #### insertLength #### This is being used by the Wold lab as a variable. term 400 tag IL400 type insertLength label 400 base pairs description insert length of 400nt term 200 tag IL200 type insertLength label 200 base pairs description insert length of 200nt term ilNA tag ILNA type insertLength label N/A description insert length not applicable ### fragSize : DNA Fragment Size for GIS DNA PET (gPET) term 1k tag F1K type fragSize label 1kb fragments description 1 kb DNA fragments term 5k tag F5K type fragSize label 5kb fragments description 5 kb DNA fragments term 10k tag F10K type fragSize label 10kb fragments description 10 kb DNA fragments term 20k tag F20K type fragSize label 20kb fragments description 20 kb DNA fragments ### localization # term (human-readable name) # tag (machine-readable name, no special characters) # type (informs pipeline code of stanza type. Should always be localization) # description (human-readable description, used with matrix entries for subcellular localization tracks) # termId (GO ID for this subcellular compartment) # termUrl (a hyperlink to this GO ID. Used with description in matrix entries) term cell tag CELL type localization label cell description Whole cell termId GO:0005623 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005623 term nucleus tag NUCLEUS type localization label nucleus description Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA termId GO:0005634 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005634 term cytosol tag CYTOSOL type localization label cytosol description The fluid between the cells outer membrane and the nucleus termId GO:0005829 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005829 term polysome tag POLYSOME type localization label polysome description Strand of mRNA with ribosomes attached termId GO:0005844 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005844 term chromatin tag CHROMATIN type localization label chromatin description Nuclear DNA and associated proteins termId GO:0000790 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000790 term nucleolus tag NUCLEOLUS type localization label nucleolus description The part of the nucleus where ribosomal RNA is actively transcribed termId GO:0005730 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005730 term nucleoplasm tag NUCLEOPLASM type localization label nucleoplasm description That part of the nuclear content other than the chromosomes or the nucleolus termId GO:0005654 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005654 term nuclearMatrix tag NUCLEARMATRIX type localization description The dense fibrillar network lying on the inner side of the nuclear membrane termId GO:0016363 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016363 term membraneFraction tag MEMBRANEFRACTION type localization label membraneFraction description That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes. termId GO:0005624 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005624 term mitochondria tag MITO type localization label mitochondria description Mitochondria termId GO:0005739 termUrl http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005739 ### RNA extracts term total tag TOTAL type rnaExtract label Total RNA description Total RNA extract (longer than 200 nt) term shortPolyA tag SHORTPOLYA type rnaExtract label Short PolyA+ RNA -description Rna shorter than 200 nt that is Poly Adenalyated +description Rna shorter than 200 nt that is Poly Adenylated term shortTotal tag SHORTTOTAL type rnaExtract label Short Total RNA -description Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation +description Rna shorter than 200 nt that has not been separated based on Poly Adenylation term longPolyA tag PAP type rnaExtract label Long PolyA+ RNA description Poly(A)+ RNA longer than 200 nt term longNonPolyA tag PAM type rnaExtract label Long PolyA- RNA description Poly(A)- RNA longer than 200 nt term polyA tag POLYA type rnaExtract label PolyA+ RNA description Isolated Poly(A) RNA term nonPolyARRna tag NONPOLYARRNA type rnaExtract label PolyA- rRNA description Depleted Poly(A) RNA and rRNA term nonPolyA tag NONPOLYA type rnaExtract label PolyA- RNA description Depleted Poly(A) RNA term proteinRnaExtracts tag PROTEINRNAEXTRACTS type rnaExtract description RNA associated with RNA binding proteins term riboZeroGold tag RIBOZEROG type rnaExtract description Ribo-Zero™ Gold Kits, removes both cytoplasmic (nuclear-encoded) rRNA and mitochondrial rRNA from 1 to 5 µg of human, mouse, or rat total RNA ### promoters term SV40 tag SV40 type promoter description Simian Virus 40 (SV40) Early Core Promoter term G-gamma tag GGAMMA type promoter description promoter for the G-gamma globulin genes ##### Control Terms term Control tag CONTROL type control label Control description This data represents a control being compared with the other tracks in the set. term Control_eGFP-BACH1 tag CONTROLBACH1 type control label eGFP-BACH1 description This data represents a control being compared to experiments using antibody eGFP-BACH1 term Control_eGFP-CCNE1 tag CONTROLCCNE1 type control label eGFP-CCNE1 description This data represents a control being compared to experiments using antibody eGFP-CCNE1 term Control_eGFP-CDKN1B tag CONTROLCDKN1B type control label eGFP-CDKN1B description This data represents a control being compared to experiments using antibody eGFP-CDKN1B term Control_eGFP-ELF1 tag CONTROLELF1 type control label eGFP-ELF1 description This data represents a control being compared to experiments using antibody eGFP-ELF1 term Control_eGFP-ESR tag CONTROLESR type control label eGFP-ESR description This data represents a control being compared to experiments using antibody eGFP-ESR term Control_eGFP-FOS tag CONTROLFOS type control label eGFP-FOS description This data represents a control being compared to experiments using antibody eGFP-FOS term Control_eGFP-GATA2 tag CONTROLGATA2 type control label eGFP-GATA2 description This data represents a control being compared to experiments using antibody eGFP-GATA2 term Control_eGFP-HDAC8 tag CONTROLHDAC8 type control label eGFP-HDAC8 description This data represents a control being compared to experiments using antibody eGFP-HDAC8 term Control_eGFP-ILF2 tag CONTROLILF2 type control label eGFP-ILF2 description This data represents a control being compared to experiments using antibody eGFP-ILF2 term Control_eGFP-JunB tag CONTROLJUNB type control label eGFP-JunB description This data represents a control being compared to experiments using antibody eGFP-JunB term Control_eGFP-JunD tag CONTROLJUND type control label eGFP-JUND description This data represents a control being compared to experiments using antibody eGFP-JUND term Control_eGFP-MLL5 tag CONTROLMLL5 type control label eGFP-MLL5 description This data represents a control being compared to experiments using antibody eGFP-MLL5 term Control_eGFP-NCOR1 tag CONTROLNCOR1 type control label eGFP-NCOR1 description This data represents a control being compared to experiments using antibody eGFP-NCOR1 term Control_eGFP-NF90 tag CONTROLNF90 type control label eGFP-NF90 description This data represents a control being compared to experiments using antibody eGFP-NF90 term Control_eGFP-NR4A1 tag CONTROLNR4A1 type control label eGFP-NR4A1 description This data represents a control being compared to experiments using antibody eGFP-NR4A1 term Control_eGFP-STAT1 tag CONTROLSTAT1 type control label eGFP-STAT1 description This data represents a control being compared to experiments using antibody eGFP-STAT1 term Control_32bp tag CNTRL32B type control label 32bp description This data represents a control being compared to experiments using read length of 32 bp term Control_36bp tag CNTRL36B type control label Control 36bp description This data represents a control being compared to experiments using read length of 36 bp term Control_50bp tag CNTRL50B type control label Control 50bp description This data represents a control being compared to experiments using read length of 50 bp #Input is used on all Chip-seq experiments to inicate that there is no antibody term Input tag INPUT type control label Input Control description Control signal which may be subtracted from experimental raw signal before peaks are called. #ripInput is used for RIP experiments as an antibody when there is no control term ripInput tag RIPIN type control label RIP input description Total input for comparison for RIP experiments term Large_Fragment tag LARGEFRAGMENT type control label Large Fragment description Control signal from sonication into large fragments of DNA (350-800 bp). term Naked_DNA tag NAKEDDNA type control label Naked DNA description Control signal from Naked DNA. #term Reference_Genome #tag REFERENCEGENOME #type control #label Reference Genome #description The reference human genome is currently hg18 - March 2006 (NCBI Build 36.1). term RevXlinkChromatin tag RXLCH type control label RevXlinkChromatin description Sequencing library made from sonicated chromatin whose formaldehyde cross-links have been reversed. These samples serve as controls for peak-calling. term None tag NONE type control label No treatment or prot description No special treatment or protocol applies ### Inputs which are a special type of control term std tag STD type control label Standard Control description Standard input signal for most experiments. term IgG-goat tag IGGGOAT type control label IgG-goat description Input signal from Normal Goat IgG ChIP-seq. term IgG-mus tag IGGMUS type control label IgG-mus description Input signal from Normal Mouse IgG ChIP-seq. term IgG-rab tag IGGRAB type control label IgG-rab description Input signal from Normal Rabbit IgG ChIP-seq. term IgG-rat tag IGGRAT type control label IgG-rat description Input signal from Normal Rat IgG ChIP-seq term IgG-Yale tag IGGYALE type control label IgG-Yale description Input signal from Mouse IgG ChIP-seq prepared at Yale term MNase tag MNASE type control label MNase Input Control description Input signal from MNase digested DNA. term UCDavis tag UCD type control label UCDavis Input Control description Input library was prepared at UC Davis. term Harvard_Control tag HVD type control label Harvard Input Control description input library was prepared at Harvard. ### Treatments term 4OHTAM_1uM_4hr tag TAM14H type treatment label 4-OHTAM 1uM 4hr description 4 hours with 1 uM 4-hydroxytamoxifen dissolved in ethanol (Struhl) term 4OHTAM_1uM_12hr tag TAM112H type treatment label 4-OHTAM 1uM 12hr description 12 hours with 1 uM 4-hydroxytamoxifen dissolved in ethanol (Struhl) term 4OHTAM_1uM_36hr tag TAM type treatment label 4-OHTAM 1uM 36hr description (To replace TAM_1uM_36hr) 36 h with 1 uM 4-hydroxytamoxifen (Myers) term 4OHTAM_20nM_72hr tag OHTAM type treatment label 4-OHTAM 20nM 72hr description 72 hours with 20 nM 4-hydroxytamoxifen (Stam) term 4OHTAM_100nM_30m tag TAM10030 type treatment label 4-OHTAM 100nM 30m description 30 minutes with 100 nM 4-hydroxytamoxifen (Crawford) term androgen tag ANDRO type treatment label Methyltrienolone description 12 hrs with 1 nM Methyltrienolone (R1881) (Crawford) term Alpha-amanitin_50ug_9hr tag AMA50UG9H type treatment description 9h with 50 ug/ml alpha-amanitin term Betamethasone_100nM tag BMETH type treatment description 1 h with 100 nM Betamethasone (Myers) term BPA_100nM tag BPA1H type treatment description 1 h with 100 nM Bisphenol A (Myers) term BPA_100nM_4hr tag BPA14H type treatment description 4 h with 100 nM Bisphenol A (Myers) term CTCF_shRNA_knockdown tag CTCFSHRNA type treatment label CTCF shRNA knockdown description CTCF (CCCTC-binding factor) transcript levels were knocked down in cells using lentiviral transduction to express an shRNA targeting the CTCF gene. The lentiviral construct also contained a puromycin resistance selectable marker and cells were treated 2 times, for three days each, to select for cells containing the retroviral construct. By western blot, CTCF protein levels in the knockdown cells were <10% of cell lines transduced with a randomized shRNA lentiviral construct. term DEX_100nM tag DEX100NM type treatment description 1 h with 100 nM Dexamethasone (Myers) term DEX_100pM tag DEX100PM type treatment description 1 h with 100 pM Dexamethasone (Myers) term DEX_1nM tag DEX1NM type treatment description 1 h with 1 nM Dexamethasone (Myers) term DEX_50nM tag DEX50NM type treatment description 1 h with 50 nM Dexamethasone (Myers) term DEX_5nM tag DEX5NM type treatment description 1 h with 5 nM Dexamethasone (Myers) term DEX_500pM tag DEX500PM type treatment description 1 h with 500 pM Dexamethasone (Myers) term DIFF_4d tag DIFF4D type treatment description Myocytes differentiated from myoblasts for 4 days. See specific cell protocol for treatment details. (Stam) term DIFF_7d tag DIFF7D type treatment description Myocytes differentiated from myoblasts for 7 days. See specific cell protocol for treatment details. (Wold) term diffProtA_2d tag DIFFA2D type treatment label 2 day diff protocol A description H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm term diffProtA_5d tag DIFFA5D type treatment label 5 day diff protocol A description H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm term diffProtA_9d tag DIFFA9D type treatment label 9 day diff protocol A description H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 9 days, lineage: mesoderm term diffProtA_14d tag DIFFA14D type treatment label 14 day diff protocol A description H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm term diffProtB_6hr tag DIFFB6H type treatment label 6 hour diff protocol B description Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 6 hours. Doxycycline added to a final concentration of 100 ng/ml. (Stam) term diffProtB_24hr tag DIFFB24H type treatment label 24 hour diff protocol B description Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 24 hours. Doxycycline added to a final concentration of 100 ng/ml (Stam) term diffProtB_72hr tag DIFFB72H type treatment label 72 hour diff protocol B description Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 72 hours. Doxycycline added to a final concentration of 100 ng/ml (Stam) term diffProtC_24hr tag DIFFC24H type treatment label 24 hour diff protocol C description 24 hour differentiation time point of mG/ER cells towards red blood cells after treatment with estradiol. Estradiol 10^-7 M final concentration (Stam) term diffProtC_48hr tag DIFFC48H type treatment label 48 hour diff protocol C description 48 hour differentiation time point of mG/ER cells towards red blood cells after treatment with estradiol. Estradiol 10^-7 M final concentration (Stam) term diffProtC_120hr tag DIFFC120H type treatment label 120 hour diff protocol C description 120 hour differentiation time point of mG/ER cells towards red blood cells after treatment with estradiol. Estradiol 10^-7 M final concentration (Stam) term diffProtD_3hr tag DIFFD3H type treatment label Estradiol 3 hour diff protocol description 3 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison) term diffProtD_7hr tag DIFFD7H type treatment label Estradiol 7 hour diff protocol description 7 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison) term diffProtD_14hr tag DIFFD14H type treatment label Estradiol 14 hour diff protocol description 14 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison) term diffProtD_24hr tag DIFFD24H type treatment label Estradiol 24 hour diff protocol description 24 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison) term diffProtD_30hr tag DIFFD30H type treatment label Estradiol 30 hour diff protocol description 30 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison) term diffProtE_3d tag DIFFE3D type treatment description 3 day differentiation of ES-D3 cells with conditioned medium MEDII to form neural precursor cells (Gilbert) term diffProtE_6d tag DIFFE6D type treatment description 6 day differentiation of ES-D3 cells with conditioned medium MEDII to form neural precursor cells (Gilbert) term diffProtE_9d tag DIFFE9D type treatment description 9 day differentiation of ES-D3 cells with conditioned medium MEDII to form neural precursor cells (Gilbert) term diffProtF_6d tag DIFFF6D type treatment description 6 day differentiation of ES-46C cells in adherent monolayer culture (Gilbert) term diffProtF_9d tag DIFFF9D type treatment description 9 day differentiation of ES-TT2 cells in adherent monolayer culture (Gilbert) term diffProtG_3d tag DIFFG3D type treatment description 3 day differentiation of ES-D3 cells with conditioned medium MEDII to form attached monolayer cells, early primitive ectoderm-like cells (EPL) (Gilbert) term diffProtH_Sox17+ tag DIFFHSOXP type treatment description Differentiation of ES-GscgfpSox17huCD25 towards endoderm cells after treatment with serum-free medium, SFO3, containing activin (10 ng/ml). After 6 days, cells were collected for Gsc+Sox17+ by fluorescence activated cell sorting (FACS). (Gilbert) term diffProtH_Sox17- tag DIFFHSOXM type treatment description Differentiation of ES-GscgfpSox17huCD25 towards mesoderm cells after treatment with serum-free medium, SFO3, containing activin (10 ng/ml). After 6 days, cells were collected for Gsc+Sox17- by fluorescence activated cell sorting (FACS). (Gilbert) term DMSO_0.02pct tag DM002P1H type treatment description 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers) term DMSO_0.02pct_24hr tag DM002P24H type treatment description 24 h with 0.02% Dimethyl sufloxide (DMSO) (Myers) term DMSO_0.02pct_7d tag DM002P7D type treatment description 7 d with 0.02% Dimethyl sufloxide (DMSO) (Myers) term DMSO_2.0pct tag DM2P5D type treatment description 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman) term DMSO_4hr tag DM002P4H type treatment description 4 hr with 0.02% Dimethyl sufloxide (DMSO) (Myers) term EqS_2.0pct_24hr tag E2P24H type treatment description 24 h with 2.0% Equine Serum and Insulin (Wold) term EqS_2.0pct_60hr tag E2P60H type treatment description 60 h with 2.0% Equine Serum and Insulin (Wold) term EqS_2.0pct_5d tag E2P5D type treatment description 5 d with 2.0% Equine Serum and Insulin (Wold) term EqS_2.0pct_7d tag E2P7D type treatment description 7 d with 2.0% Equine Serum and Insulin (Wold) term Estradiol_10nM tag EST10NM1H type treatment description 1 h with 10 nM Estradiol (Myers) term Estradiol_10nM_30m tag EST10NM30M type treatment description 30 min with 10nM 7b-Estradiol (Crawford) term Estradiol_10nM_24hr tag EST10NM24H type treatment description 24 hr with 10 nM Estradiol (Myers) term Estradiol_1nM tag EST1NM1H type treatment description 1 h with 1 nM Estradiol (Myers) term Estradiol_10nM_4hr tag EST10NM4H type treatment description 4 h with 10 nM Estradiol (Myers) term Estradiol_100nM_1hr tag EST100NM1H type treatment description 1 h with 100 nM Estradiol, hormone treatment (Stam) term Estradiol_ctrl_0hr tag ESTCTRL0H type treatment description No hormone control, zero timepoint, used to distinguish untreated sample in series (Stam) term estrogen tag ESTRO type treatment label Estradiol 100 nM description 45 min with 100 nM Estradiol (Crawford) term EtOH_0.01pct tag ETOH01 type treatment label EtOH 0.01% 36h description 36 h with 0.01% Ethanol (Snyder) term EtOH_0.01pct_4hr tag ETOH01B type treatment label EtOH 0.01% 4h description 4 h with 0.01% Ethanol (Snyder) term EtOH_0.01pct_12hr tag ETOH01C type treatment label EtOH 0.01% 12h description 12 h with 0.01% Ethanol (Snyder) term EtOH_0.02pct tag ETOH02 type treatment label EtOH 0.02% 1h description 1 h with 0.02% Ethanol (Myers) term forskolin tag FORSKLN type treatment description low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder) term G1_phase tag G1PHASE type treatment description Cells were synchronized and subjected to FACS sorting based on DNA content with the peak of the single DNA content peak taken as G1 cells. The intermediate DNA content cells between G2-M and G1 phases were excluded. (Crawford) #Cells were grown up in 10% FBS RPMI 1640 media vehicle treated with .5% DMSO for 24 hours, then 70 uL per 100 mL media of 10 mg per mL Hoechst 33342 dye was added to the media and the cells were placed back at 37 degrees for 45 minutes in the incubator. The cells were then spun down, resuspended in 2% FBS RPMI1640 placed on ice and then subjected to FACS sorting based on DNA content term G2-M_phase tag G2MPHASE type treatment description Cells were synchronized and subjected to FACS sorting based on DNA content with the peak of double DNA content taken as G2 and M cells. The intermediate DNA content cells between G2-M and G1 phases were excluded. (Crawford) #Cells were grown up in 10% FBS RPMI 1640 media vehicle treated with .5% DMSO for 24 hours, then 70 uL per 100 mL media of 10 mg per mL Hoechst 33342 dye was added to the media and the cells were placed back at 37 degrees for 45 minutes in the incubator. The cells were then spun down, resuspended in 2% FBS RPMI1640 placed on ice and then subjected to FACS sorting based on DNA content term Genistein_100nM tag GEN1H type treatment description 1 h with 100 nM Genistein (Myers) term Genistein_100nM_4hr tag GEN4H type treatment description 4 h with 100 nM Genistein (Myers) term Hypoxia_LacAcid tag HYPOXLAC type treatment label Hypoxia, Lactic acidosis description 24 h with 1% p02 and 10mM Lactate, pH 6.7 (Crawford) term Hypoxia_LacAcid_ctrl tag HYPOXLACCON type treatment label Untreated control cells description Untreated cells grown along side Hypoxia LacAcid treated cells (Crawford) term IFNa30 tag IFNA30 type treatment description 30 m of Interferon alpha (Snyder) term IFNa4h tag IFNA4H type treatment label IFN-a 4 h description 4 hours of 500 U/ml Interferon alpha (Crawford) term IFNa6h tag IFNA6H type treatment description Interferon alpha treatment - 6 hours (Snyder) term IFNg30 tag IFNG30 type treatment description Interferon gamma treatment - 30 minutes (Snyder) term IFNg4h tag IFNG4H type treatment label IFN-g 4 h description Interferon gamma treatment - 4 hours with 5 ng/ml (Crawford) term IFNg6h tag IFNG6H type treatment description Interferon gamma treatment - 6 hours (Snyder) term insulin tag INSLN type treatment description DMEM with 0.5% BSA supplemented with 100 nM insulin and 10 uM 22-hydroxycholesterol for 6 h. (Snyder) term lenti-MyoD tag LENTIMYOD type treatment description GM03348 skin fibroblasts (Coriell) were transduced with an induceable lentivirus (pAK111-TRE-3xflag hMyoD-T2A-dsRed) containing get inducible MyoD. Cells were selected in 1ug per ml puro (Sigma catalog P8833) to obtain a pure cell population. Cells were induced for MYOD expression for 10 days with doxycycline and at concentration of 3ug per ml. Standard media was used (and replaced every 2 days) during induction: DMEM, 1% Pen Strep, and 10% FBS. (Crawford) term lenti-control tag LENTICON type treatment description GM03348 skin fibroblasts (Coriell) were transduced with an induceable lentivirus (pAK111-TRE-3xflag hMyoD-T2A-dsRed) containing get inducible MyoD. Cells were selected in 1ug per ml puro (Sigma catalog P8833) to obtain a pure cell population. Cells were cultured for 10 days (NO DOXYCYCLINE) (Crawford) term MNaseD tag MNASED type treatment label Micrococcal nuclease description Fragmented using micrococcal nuclease digestion term NaBut tag NABUT type treatment label Sodium Butyrate description 0.5 mM Sodium Butyrate for 72 hours term OHUrea tag OHUREA type treatment label Hydroxyurea description 100 uM Hydroxyurea for 72 hours term pravastatin tag PRAVAST type treatment description For sterol deprivation, cells were cultured with pravastatin (2 uM, Sigma) in DMEM with 0.5% BSA for 16 h. (Snyder) term Prednisolone_100nM tag PREDNIS type treatment description 1 h with 100 nM Prednisolone (Myers) term Randomized_shRNA_control tag RANDSHRNA type treatment label Randomized shRNA control description Cells were transduced with a lentivirus expressing an shRNA containing a randomized DNA sequence generated by the siRNA Wizard v3.1 (http://www.sirnawizard.com/scrambled2.php) program. Lentiviral constructs also contained the puromycin resistance selectable marker and cells were treated 2 times, for three days each, to select for cells containing the retroviral construct. term SAHA_1uM_72hr tag SAHA1U72HR type treatment label SAHA 1uM 72hr description Cells grown with 1 uM suberoylanilide hydroxamic acid (SAHA) dissolved in DMSO supplementing RPMI1640 + 10% FBS media for 72 hours (SAHA vehicle volume is ~ .05% of the total media volume). SAHA was provided by Cayman Chemical, item # 10009929. term SAHA_ctrl tag SAHACTRL type treatment label SAHA control description Cells grown with DMSO supplementing RPMI1640 + 10% FBS media for 72 hours (DMSO volume is ~ .05% of the total media volume). This is an untreated control. term serum_free_media tag SERUMFREE type treatment label Serum-free media description Grown with growth factors, then switched to media that contains no FBS for 36 hours (Crawford) term serum_starved_media tag SERUMSTVD type treatment label serum-starved media description Grown with normal serum levels (10%), then switched to media containing low level of FBS (0.05%) for 72 hours term serum_stimulated_media tag SERUMSTIM type treatment label serum-stimulated media description Grown with normal serum levels (10%), then switched to media that contains no FBS for 36 hours, then switched back to normal serum levels (10% FBS) for 3 hours. term Taxol_500nM_24hr tag TAX24H type treatment label Taxol 500nM 24hr description 500 nM Taxol for 24 hours, then sorted for 4n DNA content (Crawford) term TGFb tag TGFB type treatment label TGF-beta description 1 ng/mL transforming growth factor beta for 24 hours (Crawford) term TNFa tag TNFA type treatment label TNF-alpha description human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder) term UT189 tag UT189 type treatment label UT189 E. coli description UT189 E.Coli treatment 1 hour, followed by 24 hour incubation term vehicle tag VEH type treatment label Vehicle description Charcoal stripped hormone-free FBS for 72 hours (Crawford) term ZNF_knockout_2C10_C5 tag ZNF2C10C5 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), homozygous (Stam) term ZNF_knockout_4C50_C4 tag ZNF4C50C4 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), homozygous (Stam) term ZNF_knockout_4G7_D3 tag ZNF4G7D3 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), homozygous (Stam) term ZNF_knockout_A4.1-C6 tag ZNFA41C6 type treatment deprecated data withdrawn description off-target control (Stam) term ZNF_knockout_A4.1-E2 tag ZNFA41E2 type treatment deprecated data withdrawn description off-target control (Stam) term ZNF_knockout_B3.4-A8 tag ZNFB34A8 type treatment deprecated data withdrawn description beta-globin LCR inversion, heterozygous (Stam) term ZNF_knockout_E10.3-C6 tag ZNFE103C6 type treatment deprecated data withdrawn description beta-globin LCR inversion, heterozygous (Stam) term ZNF_knockout_E6.1-A1 tag ZNFE61A1 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), heterozygous (Stam) term ZNF_knockout_F4.1-B2 tag ZNFF41B2 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), heterozygous (Stam) term ZNF_knockout_G5.4-A11 tag ZNFG54A11 type treatment deprecated data withdrawn description beta-globin LCR deletion (18Kb), heterozygous (Stam) term ZNF_knockout_P5 tag ZNFP5 type treatment deprecated data withdrawn description Parental K562 (Stam) ### Protocols term FASP tag FASP type protocol label FASP description Filter-Assisted Sample Preparation (FASP) proteomics protocol (Giddings) term In-gel tag INGEL type protocol label In-gel digestion description In-gel digestion proteomics protocol (Giddings) term MudPIT tag MUDPIT type protocol label MudPIT description Multidimensional Protein Identification Technology (MudPIT) proteomics protocol (Giddings) term PCR1x tag PCR1X type protocol label PCR 1-round description one 15-cycle round of PCR (Myers) term PCR2x tag PCR2X type protocol label PCR 2-round description a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers) term SDS-Page tag SDSPAGE type protocol label SDS-Page proteomics sample description SDS-Page proteomics sample preparation protocol (Giddings) term v041610.1 tag V0416101 type protocol label biorupter, PCR 1-round description 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers) term v041610.2 tag V0416102 type protocol label sonicator, PCR 1-round description 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers) term v042211.1 tag V0422111 type protocol label ChIP AMpure XP description Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers) term v042211.2 tag V0422112 type protocol label ChIP gel description Faster ChIP protocol & gel size selection for ChIP-seq (Myers) term TAP-Only tag TAP type protocol label Tobacco Acid Pyrophosphatase Only description This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned. term CIP-TAP tag CIPTAP type protocol label CIP-TAP description This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs. ### phase term G1 tag G1 type phase label G1 description Flow sorted, G1 phase corresponds to the first DNA content window term G1b tag G1B type phase label G1b description Flow sorted, G1b phase corresponds to the second half of the first DNA content window term G2 tag G2 type phase label G2 description Flow sorted, G2 phase corresponds to the second DNA content window term S1 tag S1 type phase label S1 description Flow sorted, S1 phase corresponds to the third DNA content window term S2 tag S2 type phase label S2 description Flow sorted, S2 phase corresponds to the fourth DNA content window term S3 tag S3 type phase label S3 description Flow sorted, S3 phase corresponds to the fifth DNA content window term S4 tag S4 type phase label S4 description Flow sorted, S4 phase corresponds to the sixth DNA content window ### region # genomic regions used in experiments that are not whole-genome term chr21 tag CHR21 type region label chr21 description Chromsome 21 term ENM tag ENM type region label ENCODE pilot regions description ENCODE pilot manually-selected regions (http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/referenceSequences/encodePilotRegions.hg19.bed) term ENR tag ENR type region label ENCODE pilot random description ENCODE pilot randomly-selected regions (http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/referenceSequences/encodePilotRegions.hg19.bed) term UW-5C-Myc-Region tag UW5CMYC type region label UW-5C-Myc-Region description Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929) term UW-5C-Gene-Regions tag UW5CGENE type region label UW-5C-Gene-Regions description Set of 25 regions interrogated in UW 5C gene-targeted experiments ### restrictionEnzyme term msp tag MSP type restrictionEnzyme label MSPI description MSPI Restriction Enzyme term hpa tag HPA type restrictionEnzyme label HPAII description HPAII Restriction Enzyme ### view THIS WHOLE SECTION IS A ATTEMPT AT CONTROLLING VIEWS ### term: ### tag: This is the camel case convention that we use in our file names ### label: This will be used for human display term Alignability tag ALIGNABI type view label Alignability description Displays how uniquely k-mer sequences align to a region of the genome. The GEM mapper (GEnome Multitool, CRG) maps sliding windows of k-mers (where k has been set to 36, 40, 50, 75 or 100 nts) allowing up to 2 mismatches. Mappability scores were computed as S = 1/(number of matches found in the genome). The CRG Alignability tracks were generated independently of the ENCODE project. term Alignments tag ALN type view label Alignments description Shows individual reads mapped to the genome and indicates where bases may mismatch term Base_Overlap_Signal tag SIGBO type view label Base overlap signal description An alternative version of the F-Seq Density Signal track annotation that provides a higher resolution view of the raw sequence data. This track also includes the combined set of sequences from all replicates. For each sequence, the aligned read is extended 5 bp in both directions from its 5' aligned end where DNase cut the DNA. The score at each base pair represents the number of extended fragments that overlap the base pair. term Clusters tag CLUSTERS type view label Clusters description Clusters built from the alignments term CNV tag CNV type view label CNV description Copy Number Variation term Contigs tag CONTIGS type view label Contigs description Contigs represent continuous regions of the genome that are covered by several overlapping RNA-seq reads. The score represents the logarithm of the expression level (read coverage depth). term CpG_Sites tag CPG type view label CpG Sites description CpG Methylation Sites term NonCpG_Sites tag NONCPG type view label Non-CpG Sites description Non-CpG Methylation Sites term Excludable tag EXCLU type view label Excludable description Genomic regions for which mapped sequence tags were filtered out before signal generation and peak calling, problematic regions for short sequence tag signal detection (such as satellites and rRNA genes) term ExonsDeNovo tag EXONSDENOVO type view label ExonsDenovo description Expression level estimates for Cufflinks exons, derived by summing the expression levels in RPKM for all transcripts containing a given exon term ExonsGencV3c tag EXONGENCV3C type view label Exons Gencode V3c description Expression level estimates for GENCODE CRCh37.v3c exons in gtf format derived by summing the expression levels in FPKM for all transcripts containing a given exon term ExonsGencV7 tag EXONGENCV7 type view label Exons Gencode V7 description Expression level estimates for GENCODE V7 exons in gtf format derived by summing the expression levels in FPKM for all transcripts containing a given exon term ExonsGencV10 tag EXONGENCV10 type view label Exons Gencode V10 description Expression level estimates for GENCODE V10 exons in gtf format derived by summing the expression levels in FPKM for all transcripts containing a given exon term ExonsEnsV65IAcuff tag EXONENSV65 type view label Exons ENSEMBL V65 description Expression level estimates for ENSEMBL V65 exons, and Cufflinks exons that are intergenic or antisense with respect to ENSEMBL 65 annotation. Exon RPKMs are computed by summing the expression levels in RPKM for all transcripts containing a given exon term Fasta3p tag FASTA3P type view label Fasta3p description 3 prime RNA FASTA term Fasta5p tag FASTA5P type view label Fasta5p description 5 prime RNA FASTA term FastaRd1 tag FASTARD1 type view label FastaRd1 description FASTA Read 1 term FastaRd2 tag FASTARD2 type view label FastaRd2 description FASTA Read 2 term FastqRd1 tag FASTQRD1 type view label FastqRd1 description Raw sequence with Phred33 quality scores Read 1 term FastqRd2 tag FASTQRD2 type view label FastqRd2 description Raw sequence with Phred33 quality scores Read 2 term FiltTransfrags tag FILTTRANSFRAGS type view label Filtered Transfrags description Filtered transcript fragments term GeneDeNovo tag GENEDENO type view label Genes De Novo description 'De novo' genes defined by Cufflinks, and their associated RPKMs, as computed by the Flux Capacitor term GeneGencV7 tag GENEGENCV7 type view label Genes Gencode V7 description Expression level estimates at the gene level for the GENCODE V7 annotation in gtf format term GeneGencV10 tag GENEGENCV10 type view label Genes Gencode V10 description Expression level estimates at the gene level for the GENCODE V10 annotation in gtf format term GeneGencV3c tag GENEGENCV3C type view label Genes Gencode V3c description Expression level estimates at the gene level for the GENCODE CRCh37.v3c annotation in gtf format term GeneEnsV65IAcuff tag GENENSV65 type view label Genes ENSEMBL V65 description Expression level estimates for ENSEMBL 65 genes, and Cufflinks gene models that are intergenic or antisense with respect to ENSEMBL 65 annotation term HMM tag HMM type view label HMM description Hidden Markov Model term Hotspots tag HOTSPOTS type view label Hotspots description ChIP-seq affinity zones identified using the HotSpot algorithm term Interactions tag INTERACTIONS type view label Interactions description ChIA-PET Chromatin Interaction PET clusters: Two different genomic regions in the chromatin are genomically far from each other or in different chromosomes, but are spatially close to each other in the nucleus and interact with each other for regulatory functions. BED12 format is used to represent the data. term Junctions tag JUNCTIONS type view label Junctions description TopHat-defined (Caltech) or STAR-defined (CSHL) splice junctions term Matrix tag MATRIX type view label Matrix description Interaction files in matrix format. The number of sequences mapped to each interaction fills the matrix. term MinusRawSignal tag MINUSRAWSIG type view label Minus Raw signal description Graphs the base-by-base density of tags on the minus strand term MinusSignal tag MINUSSIG type view label Minus signal description Graphs the base-by-base density of tags on the minus strand term Peaks tag PKS type view label Peaks description Regions of enriched signal in experiment term pepMapFt tag PEPMAPFT type view label Peptide Mapping (filtered) description Peptide mapping results based on the hg19 genome for mass-spectrometry-based proteomics experiments filtered by false discovery rate (FDR) better than 5%. term pepMapUnFt tag PEPMAPUNFT type view label Peptide Mapping (unfiltered) description Peptide mapping results based on the hg19 genome for mass-spectrometry-based proteomics experiments unfiltered by false discovery rate (FDR). term pepMapGcFt tag PEPMAPGCFT type view label Peptide Genome and GENCODE Mapping (filtered) description Peptide mapping results based on the hg19 genome and GENCODE annotation for mass-spectrometry-based proteomics experiments filtered by false discovery rate (FDR) better than 5%. term pepMapGcUnFt tag PEPMAPGCUNFT type view label Peptide Genome and GENCODE Mapping (unfiltered) description Peptide mapping results based on the hg19 genome and GENCODE annotation for mass-spectrometry-based proteomics experiments unfiltered by false discovery rate (FDR). term mPepMapGcFt tag MPEPMAPGCFT type view label Modified Peptide Genome and GENCODE Mapping (filtered) description Modified peptide mapping results based on the hg19 genome and GENCODE annotation for mass-spectrometry-based proteomics experiments filtered by false discovery rate (FDR) better than 5%. term mPepMapGcUnFt tag MPEPMAPGCUNFT type view label Modified Peptide Genome and GENCODE Mapping (unFiltered) description Modified peptide mapping results based on the hg19 genome and GENCODE annotation for mass-spectrometry-based proteomics experiments unfiltered by false discovery rate (FDR). term PrimerPeaks tag PRIMEPKS type view label Primer Peaks description Regions of enriched signal for a given Primer Set term PeptideMapping tag PEPTIDEMAP type view label Peptide Mapping description PeptideMapping term ModifiedPeptideMapping tag MODPEPTIDEMAP type view label Modified Peptide Mapping description Modified Peptide Mapping term PctSignal tag PCTSIG type view label Percentage-normalized Signal description Signal over an interval as a percentage of normalized tag densities over all phases term PlusRawSignal tag PLUSRAWSIG type view label Plus Raw signal description Graphs the base-by-base density of tags on the plus strand term PlusSignal tag PLUSSIG type view label Plus signal description Graphs the base-by-base density of tags on the plus strand term Primer tag PRIMER type view label Primer deprecated Data linked to view is specific to the composite and not considered an experiment description The sequences of the primers used in the experiments and sequences for the control sites. term Protocol tag PRTCL type view label Protocol description Document of experimental methods term Qual3p tag QUAL3P type view label QUAL3P description Qual3p term Qual5p tag QUAL5P type view label Qual5p description Qual5p term RawData tag RAW type view label Raw data description Sequence and quality files term RawData2 tag RAW2 type view label Raw data 2 description Sequence and quality files term RawSignal tag RAWSIG type view label Raw signal description Shows the density of mapped reads on the plus and minus strands (wiggle format) term RbpAssocRna tag RBPASSOCRNA type view label Rbp Associated RNA description Ribosome binding protein associated RNA term Regions tag REGIONS type view label Regions description Regions term RepPeaks tag REPPEAKS type view label Replicate Peaks description Peaks determined per individual replicate term RepSignal tag REPSIGNAL type view label Replicate Signal description Signal determined per individual replicate term Signal tag SIG type view label Signal description Signal term SimpleSignal tag SIGSIMPLE type view label Simple Signal description Simple Signal term Sites tag SITES type view label Sites description Sites term SNP tag SNP type view label SNP description Single Nucleotide Polymorphism term Spikeins tag SPKNS type view label Spike-ins description Spikeins term Splices tag SPLICES type view label Splices description Subset of aligned reads that cross splice junctions term SumSignal tag SUMSIG type view label Summed Densities description Shows summed densities of all phases combined term TranscriptDeNovo tag TRANSDENOVO type view label Transcripts De novo description 'De novo' transcripts defined by Cufflinks, and their associated RPKMs, as computed by the Flux Capacitor term TranscriptGencV10 tag TRANSGENCV10 type view label Transcript Gencode V10 description Expression level estimates at the transcript level for the GENCODE V10 annotation in gtf format term TranscriptGencV7 tag TRANSGENCV7 type view label Transcript Gencode V7 description Expression level estimates at the transcript level for the GENCODE V7 annotation in gtf format term TranscriptGencV3c tag TRANSGENCV3C type view label Transcript Gencode V3c description Expression level estimates at the transcript level for the GENCODE CRCh37.v3c annotation in gtf format term TranscriptEnsV65IAcuff tag TRANSENSV65 type view label Transcript ENSEMBL V65 description Expression level estimates for ENSEMBL 65 transcript, and Cufflinks transcript models that are intergenic or antisense with respect to ENSEMBL 65 annotation term Transfrags tag TRANSFRAGS type view label Transfrags description Transcribed fragments term TssGencV3c tag TssV3c type view label TSS Gencode V3c description Expression level estimates for GENCODE v3c transcription start sites (TSS) in gtf format derived by summing the expression levels in FPKM for all transcripts originating from a given TSS term TssGencV7 tag TssV7 type view label TSS Gencode V7 description Expression level estimates for GENCODE v7 transcription start sites (TSS) in gtf format derived by summing the expression levels in FPKM for all transcripts originating from a given TSS term TssHmm tag TssHmm type view label TSS HMM description Expression level estimates for transcription start sites (TSS) term UniformSignal tag UNISIG type view label Uniform Signal by AWG description Uniform Signal term Uniqueness tag UNQ type view label Uniqueness description Displays how unique is each sequence on the positive strand starting at a particular base and of a particular length. The score of 1 represents completely unique, 0.5 occurs exactly twice, 0.33 three times, 0.25 four times and 0 occurs > 4 times (excluding chrN_random and alternative haplotypes). The Duke uniqueness tracks were generated for the ENCODE project. term Validation tag VALIDATION type view label Validation description Documents used for the verification of experimental results term Valleys tag VALS type view label Valleys description Regions of enriched signal in experiment term WaveSignal tag WAVESIG type view label Wavelet-smoothed Signal description Shows smoothed wavelet over all phases ### dataType ### term: Ideally this should be the term used by NHGRI for the data type ### tag: This is the camel case convention that we use in our file names ### label: This will be used for human display and should also match NHGRI term 5C tag 5C type dataType label 5C dataGroup Other description 5C Chromatin Interactions term AffyExonArray tag AFFYEXONARRAY type dataType label Exon Array dataGroup RNA Profiling description Affymetrix Exon Microarray term Bip tag BIP type dataType label Bi-dir Promoters dataGroup Other description Bidirectional Promoters term Cage tag CAGE type dataType label CAGE dataGroup RNA Profiling description CAGE 5' RNA Tags term ChipSeq tag CHIPSEQ type dataType label ChIP-seq dataGroup TFBS & Histones description Chromatin IP Sequencing term Cluster tag CLUSTER type dataType label Integ Cluster dataGroup Other description Element Clusters by Integrative Analysis term Combined tag COMBO type dataType label Combined dataGroup Other description Multi-assay Synthesis term DnaseDgf tag DGF type dataType label DNase-DGF dataGroup Open Chromatin description DNase Digital Footprinting term DnaPet tag DNAPET type dataType label DNA-PET dataGroup Other description DNA Paired-End Tags term DnaseSeq tag DNASESEQ type dataType label DNase-seq dataGroup Open Chromatin description DNaseI HS Sequencing term FaireSeq tag FAIRESEQ type dataType label FAIRE-seq dataGroup Open Chromatin description FAIRE-seq Open Chromatin term Genotype tag GENOTYPE type dataType label Genotype dataGroup Other description Genotype CNV and SNP term Gencode tag GENCODE type dataType label GENCODE dataGroup Other description GENCODE term ChiaPet tag CHIAPET type dataType label ChIA-PET dataGroup Other description Chromatin Interaction Paired-End Tags term Orchid tag ORCHID type dataType label ORChID dataGroup Other description ORChID DNA Cleavage term Mapability tag MAPABILITY type dataType label Mappability dataGroup Other description Short Read Mappability term MethylArray tag METHYLARRAY type dataType label Methyl Array dataGroup DNA Methylation description DNA Methylation Array term MethylSeq tag METHYLSEQ type dataType label Methyl-seq dataGroup DNA Methylation description DNA Methyl Seq term MethylRrbs tag METHYLRRBS type dataType label Methyl RRBS dataGroup DNA Methylation description DNA Methyl Reduced Rep Bisulfite Seq term MethylWgbs tag METHYLWGBS type dataType label Methyl WGBS dataGroup DNA Methylation description DNA Methyl Whole Genome Bisulfite Seq term NRE tag NRE type dataType label Negative Regulatory Elements dataGroup Other description Negative Regulatory Elements term Nucleosome tag NUCLEOSOME type dataType label Nucleosome dataGroup Other description Nucleosome Position term Proteogenomics tag PROTGENO type dataType label Proteogenomics dataGroup Other description Mass Spec Proteogenomic Mapping term RepliChip tag REPLICHIP type dataType label Repli-chip dataGroup Other description Assessment of DNA Replication Timing term RepliSeq tag REPLISEQ type dataType label Repli-seq dataGroup Other description Assessment of DNA Replication Timing term RnaPet tag PET type dataType label RNA-PET dataGroup RNA Profiling description RNA Paired-End Tags term RnaChip tag RNACHIP type dataType label RNA-chip dataGroup RNA Profiling description RNA Protein Interactions term RnaSeq tag RNASEQ type dataType label RNA-seq dataGroup RNA Profiling description Sequencing analysis of RNA expression term RipGeneSt tag GENEST type dataType label RIP Gene ST dataGroup RNA Binding Proteins description RNA IP Gene Array term RipTiling tag TILING type dataType label RIP Tiling Array dataGroup RNA Binding Proteins description RNA IP Tiling Array term RipChip tag RIPCHIP type dataType label RIP-chip dataGroup RNA Binding Proteins description RNA IP Microarray term RipSeq tag RIPSEQ type dataType label RIP-seq dataGroup RNA Binding Proteins description RNA IP Sequencing term Switchgear tag SWITCHGEAR type dataType label RIP Validation dataGroup RNA Binding Proteins description RNA IP SwitchGear Validation term TfbsValid tag TFBSVALID type dataType label TFBS Validation dataGroup Other description Validation of Transcription Factor Binding ### Strain # Used in conjunction with mouse submissions # Expected fields: # ---------------- # term human-readable name # tag machine-readable name, no special characters # type informs pipeline code of stanza type. Should always be strain # description human-readable description. Can't say where/how it's used term B10.H-2aH-4bp/Wts tag 2A4B type strain label B10.H-2aH-4bp/Wts description Derived by inbreeding from selected F2 progeny of B10.A X B10.129 term B6D2F1/J tag B6D2F1J type strain label B6D2F1/J description Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1. term B6CBAF1/J tag B6CBAF1J type strain description Derived from cross between C57BL/6J Female x CBA/J Male (C57BL/6 x CBA)F1/J. term BALB/cJ tag BALBCJ type strain description A common inbred strain of laboratory mouse. term BALB/cAnN tag BALBCANN type strain label BALB/cAnN description ccMyeloma high incidence H2d term C3H tag C3H type strain label C3H description Strain C3H, Very related to C57BL/6 term C57BL/6 tag C57BL6 type strain label C57BL/6 description C57 black 6, the most common inbred strain of laboratory mouse term C57BL/6J tag C57BL6J type strain label C57BL/6J description A substrain of C57BL/6 term CD-1 tag CD1 type strain label CD-1 description Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy. term DBA/2 tag DBA2 type strain label DBA/2 description Inbred strain used for Coat Color Experiments. Was DBA/212 but reclassified as DBA/2 term NIH/Swiss tag NIHS type strain label NIH/Swiss description An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing. term RIII tag RIII type strain label RIII description High mammary tumor incidence in unfostered substrains. term 129 tag S129 type strain label 129 description Strain 129, has widely available embryonic stem cells term 129.DLCR/DLCR tag 129DLCR type strain label 129.ΔLCR/ΔLCR description 129 strain mouse with homozygous deletion of the beta-globin LCR region, see Bender et. al. (2000). Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region. term 129/Ola tag 129OLA type strain label 129/Ola description The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice. term 129S1/SVImJ tag 129S1 type strain description Control inbred strain of the steel-derived ES cells. term 129S2/SvPas tag 129S2 type strain description The mice have white (or light)-bellied agouti. term 129S4/SvJae tag 129S4 type strain description The mice have white (or light)-bellied agouti and have been used to develop multiple embryonic stem cell lines term Spretus.BL6-Xist tag SPBL6 type strain label Spretus.BL6-Xist description M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. term Unknown tag UKN type strain label Unknown description Unknown strain origin ### Age # Used in conjunction with mouse submissions # Expected fields: # ---------------- # term (human-readable name) # tag (machine-readable name, no special characters) # type (informs pipeline code of stanza type. Should always be age) # stage (either embryonic or adult. cannot say how/where this is used) # description (human-readable description. Can't say where/how it's used) # label provisional labels using description term E0 tag E0 type age label Embryonic day 0 (stem cell) description Embryonic day 0 (stem cell) stage Embryonic term E3.5 tag E3HALF type age label Embryonic day 3.5 description Embryonic day 3.5 stage Embryonic term E11.5 tag E11HALF type age label Embryonic day 11.5 description Embryonic day 11.5 stage Embryonic term E13.5 tag E13HALF type age label Embryonic day 13.5 description Embryonic day 13.5 stage Embryonic term E14 tag E14 type age label Embryonic day 14 description Embryonic day 14 stage Embryonic term E14.5 tag E14HALF type age label Embryonic day 14.5 description Embryonic day 14.5 stage Embryonic term E18 tag E18 type age label Embryonic day 18 description Embryonic day 18 stage Embryonic term E18.5 tag E18HALF type age label Embryonic day 18.5 description Embryonic day 18.5 stage Embryonic term newborn-1days tag NEW1DAYS type age label Newborn 1 day description Newborn 1 day stage newborn term adult-1wks tag ADULT1WKS type age label Adult 1 week description Adult 1 week stage Adult term adult-4wks tag ADULT4WKS type age label Adult 4 weeks description Adult 4 weeks stage Adult term adult-5wks tag ADULT5WKS type age label Adult 5 weeks description Adult 5 weeks stage Adult term adult-8wks tag ADULT8WKS type age label Adult 8 weeks description Adult 8 weeks stage Adult term adult-10-12wks tag ADULT810WKS type age label Adult 8-10 weeks description Adult between 8-10 weeks stage Adult term adult-24wks tag ADULT24WKS type age label Adult 24 weeks description Adult 24 weeks stage Adult term immortalized tag IMMORTAL type age label Immortal cells description Immortal cells stage Cell Line term ageUnknown tag AGEUNKN type age label the age when the real age is unknown description the age when the real age is unknown stage stageUnknown ### Attic # Expected fields: # ---------------- # term (human-readable name) # tag (machine-readable name, no special characters) # type (informs pipeline code of stanza type. Should always be attic) # description (human-readable description. Can't say where/how it's used) # label provisional, same as term term supplemental tag SUP type attic label supplemental description Files supplemental at composite level term auxSup tag AUXSUP type attic label auxSup description Unverified files supplemental at experiment level term auxValid tag AUXVAL type attic label auxValid description Validated files supplemental to experiments term auxExp tag AUXEXP type attic label auxExp description Supplemental experiments # Expected fields: # ---------------- # term (human-readable name) # tag (machine-readable name, no special characters. uppercase) # type (informs pipeline code of stanza type. Should always be sex) # description (human-readable description. Can't say where/how it's used) # label provisional, same as description # # Category: T for tissue, L for cell Line, P for Primary cell term Tissue tag T type category label Tissue description Tissue term cellLine tag L type category label cell line description cell line term primaryCells tag P type category label primary cells description primary cells term M tag M type sex description Male term F tag F type sex description Female term B tag B type sex description Both: a cell population with both male and female cells term U tag U type sex description Unknown ## object Status term revoked tag REVOKED type objStatus description This file has been REVOKED by the submitting laboratory. It should not be used for further research. term replaced tag REPLACED type objStatus description This file has been REPLACED by the submitting laboratory with an improved version. term renamed tag RENAMED type objStatus description This file has been RENAMED by the submitting laboratory. Please see updated file for newest metadata. # Type Organism term human tag HUMAN type organism description Human term mouse tag MOUSE type organism description Mouse ## Tissue Sourced (Used for Mouse cell) term Both tag BOTH type tissueSourceType description Tissue analyzed using replicate samples obtained from and individual and by pooling. term Individual tag INDIV type tissueSourceType description Tissue obtained from an individual term Pooled tag POOL type tissueSourceType description Tissue obtained from pooling samples from various sample organisms # Seq Platform # Expected fields: # --------------- # term (human-readable name) # tag (machine-readable name, no special characters. uppercase.) # type (informs pipeline code of stanza type, should be seqPlatform) # description: Working on inputing description from geo and product website # label provisional label using description and words joined with numbers term Illumina_GA tag ILLUMINAGA type seqPlatform label Illumina Genome Analyzer description Illumina Genome Analyzer geoPlatformName Illumina Genome Analyzer term Illumina_GA2 tag ILLUMINAGA2 type seqPlatform label Illumina Genome Analyzer II description Illumina Genome Analyzer II geoPlatformName Illumina Genome Analyzer II term Illumina_GA2e tag ILLUMINAGA2E type seqPlatform label Illumina Genome Analyzer IIe description Illumina Genome Analyzer IIe geoPlatformName Illumina Genome Analyzer II term Illumina_GA2x tag ILLUMINAGA2X type seqPlatform label Illumina Genome Analyzer IIx description Illumina Genome Analyzer IIx geoPlatformName Illumina Genome Analyzer II term Illumina_HiSeq_2000 tag ILLUMINAHISEQ2000 type seqPlatform label Illumina HiSeq 2000 description Illumina HiSeq 2000 geoPlatformName Illumina HiSeq 2000 term 454_GS tag 454GS type seqPlatform label Roche 454 Genome Sequencer description Roche 454 Genome Sequencer geoPlatformName 454 GS term 454_GS_20 tag 454GS20 type seqPlatform label Roche454 Genome Sequencer 20 description Roche 454 Genome Sequencer 20 geoPlatformName 454 GS 20 term 454_GS_FLX tag 454GSFLX type seqPlatform label Roche 454 Genome Sequencer FLX description Roche 454 Genome Sequencer FLX geoPlatformName 454 GS FLX term AB_SOLiD tag ABSOLID type seqPlatform label Applied Biosystems SOLiD System description Applied Biosystems SOLiD System geoPlatformName AB SOLiD System term AB_SOLiD_2.0 tag ABSOLID2 type seqPlatform label Applied Biosystems SOLiD System 2.0 description Applied Biosystems SOLiD System 2.0 geoPlatformName AB_SOLiD System 2.0 term AB_SOLiD_3.5 tag ABSOLID3PLUS type seqPlatform label Applied Biosystems SOLiD System 3.5 description Applied Biosystems SOLiD System 3.5 geoPlatformName AB SOLiD 3 Plus #Uses the GEO terms to be conistent and help with GEO submissions ### Platform # Expected fields: # --------------- # term (human-readable name) # tag (machine-readable name, no special characters. uppercase.) # type (informs pipeline code of stanza type, should be seqPlatform) # description: Working on inputing description from geo and product website term GPL13190 tag GPL13190 type platform description Human CGH 2.1M Whole-Genome Tiling v2.0D Array geoPlatformName NimbleGen Human CGH 2.1M Whole-Genome Tiling Array [080131_HG18_WG_CGH_v2D_HX1] term GPL14965 tag GPL14965 type platform description Human 3x720k Whole Genome CGH geoPlatformName NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3] term GPL10989 tag GPL10989 type platform description NimbleGen Mouse CGH 3x720K Whole-Genome Tiling (FSU) geoPlatformName NimbleGen Mouse CGH 3x720K Whole-Genome Tiling [080603_MM9_WG_CGH_HX3] term GPL9156 tag GPL9156 type platform description FSU NimbleGen Mouse 385K Whole Genome Tiling geoPlatformName FSU NimbleGen Mouse 385K Whole Genome Tiling #LABS #term: #tag: Short, uppercase, no special characters #type: We use the phrase lab as a source of data #label: What is seen in findTracks. Roughly "$labPi - $labInst" #labInst: This is the full name of the Institution where the lab is housed #labPi: This is the shortened name that we refer to the PI, usually just last name #labPiFull: The full name of the PI #grantPI: Shortened name of the head PI for the grant #type grant #grantInst: The name of the institution where the grant is administered from. #projectName: #organism: human or mouse term BioChain tag BIOCHAIN type lab label BioChain description The BioChain subset of HudsonAlpha grantPi Myers labInst BioChain labPi Myers labPiFull Richard Myers organism human term Broad tag BROAD type lab label Bernstein - Broad Institute description Bernstein - Broad Institute grantPi Bernstein labInst Broad Institute labPi Bernstein labPiFull Bradley Bernstein organism human term BU tag BU type lab label Tullius - Boston University description Tullius - Boston University grantPi Tullius labInst Boston University labPi Tullius labPiFull Thomas Tullius organism human term CRG-Guigo tag CRG type lab label Guigo - CGR, Barcelona description Guigo - CGR, Barcelona grantPi Gingeras labInst Genome Center for Genomic Regulation, Barcelona labPi Guigo labPiFull Roderic Guigo organism human term GIS-Ruan tag GISRUAN type lab label Ruan - GIS (Chia) description Ruan - Genome Institute of Singapore (Chia) grantPi Ruan labInst Genome Institute of Singapore (Chia) labPi Ruan labPiFull Yijun Ruan organism human term Sanger tag SANGER type lab label Hubbard - GENCODE at Sanger description Hubbard - GENCODE at Sanger Institute grantPi Hubbard labInst Gencode labPi Hubbard labPiFull Tim Hubbard organism human term SunyAlbany tag SUNY type lab label Tenenbaum - SUNY at Albany description Tenenbaum - SUNY at Albany grantPi Tenenbaum labInst State University of New York at Albany labPi Tenenbaum labPiFull Scott Tenebaum organism human term UCSC tag UCSC type lab label Kent - UC Santa Cruz description Kent - UC Santa Cruz grantPi Kent labInst University of California at Santa Cruz labPi Kent labPiFull Jim Kent organism human term UW tag UW type lab label Stamatoyannopoulous - UW description Stamatoyannopoulous - University of Washington grantPi Stam labInst University of Washington labPi Stam labPiFull John Stamatoyannopoulous organism human ### Duke Labs ### Crawford and Iyer term Duke tag DUKE type lab label Crawford - Duke University description Crawford - Duke University grantPi Crawford labInst Duke University labPi Crawford labPiFull Greg Crawford organism human term UT-A tag UT-A type lab label Iyer - UT Austin description Iyer - University of Texas at Austin grantPi Crawford labInst University of Texas at Austin labPi Iyer labPiFull Tara Iyer organism human term UNC tag UNC type lab label Lieb - UNC description Lieb - University of North Carolina grantPi Crawford labInst Univeristy of North Carolina labPi Lieb labPiFull Jason Lieb organism human ### HAIB Project Labs ### Caltech and HudsonAlpha term Caltech tag CALTECH type lab label Wold - CalTech description Wold - California Institute of Technology grantPi Myers labInst California Institute of Technology labPi Wold labPiFull Barbara Wold organism human term HudsonAlpha tag HAIB type lab label Myers - Hudson Alpha description Myers - Hudson Alpha Institute for Biotechnology grantPi Myers labInst Hudson Alpha Institute for Biotechnology labPi Myers labPiFull Richard Myers organism human ### NHGRI Labs term NHGRI-Elnitski tag NHGRI-ELNITSKI type lab label Elnitski - NHGRI description Elnitski - National Human Genome Research Institute grantPi Elnitski labInst National Human Genome Research Institute labPi Elnitski labPiFull Laura Elnitski organism human term NHGRI-Margulies tag NHGRI-MARGULIES type lab label Margulies - NHGRI description Margulies - National Human Genome Research Institute grantPi Margulies labInst National Human Genome Research Institute labPi Margulies labPiFull Elliott Margulies organism human ### Transcriptome Project Labs ### GIS, Riken, CHSL, CSHL, Affy, Helicos term CSHL tag CSHL type lab label Gingeras - CSHL description Gingeras - Cold Spring Harbor Laboratory grantPi Gingeras labInst Cold Spring Harbor Laboratory labPi Gingeras labPiFull Thomas Gingeras organism human term GIS tag GIS type lab label Ruan - GIS description Ruan - Genome Institute of Singapore grantPi Gingeras labInst Genome Institute of Singapore labPi Ruan labPiFull Yijun Ruan organism human term Helicos tag HELICOS type lab label Kapranov - Helicos description Kapranov - Helicos BioScience Corporation grantPi Gingeras labInst Helicos BioScience Corporation labPi Kapranov labPiFull Philipp Kapranov organism human term Affy tag AFFY type lab label Gingeras - Affymetrix description Gingeras - Affymetrix grantPi Gingeras labInst Affymetrix labPi Gingeras labPiFull Thomas Gingeras organism human term RIKEN tag RIKEN type lab label Carninci - RIKEN description Carninci - RIKEN Omics Science Center grantPi Gingeras labInst Riken Omics Science Center labPi Carninci labPiFull Piero Carninci organism human ### UMass Labs ### Dekker and Weng term UMass-Dekker tag UMASS-DEKKER type lab label Dekker - UMass description Dekker - University of Massachusettes grantPi Dekker labInst UMass labPi Dekker labPiFull Job Dekker organism human term UMass-Weng tag UMASS-WENG type lab label Weng - UMass description Weng - University of Massachusettes grantPi Weng labInst UMass labPi Weng labPiFull Zhiping Weng organism human #### The SYDH Project #### Stanford, Yale, Davis, Harvard term Stanford tag STANFORD type lab label Snyder - Stanford description Snyder - Stanford University grantPi Snyder labInst Stanford labPi Snyder labPiFull Michael Snyder organism human term Yale tag YALE type lab label Snyder - Yale description Snyder - Yale University grantPi Snyder labInst Yale labPi Snyder labPiFull Michael Snyder organism human term Yale-Weissman tag YALEWEIS type lab label Weissman - Yale description Weissman - Yale University grantPi Snyder labInst Yale labPi Weissman labPiFull Sherman Weissman organism human term Harvard tag HARVARD type lab label Struhl - Harvard description Struhl - Harvard University grantPi Snyder labInst Harvard labPi Struhl labPiFull Kevin Struhl organism human term USC tag USC type lab label Farnham - USC description Farnham - University of Southern California grantPi Snyder labInst USC labPi Farnham labPiFull Peggy Farnham organism human ### ARRA human labs term UNC/BSU tag UNCBSU type lab label Giddings - UNC and Boise description Giddings - University of North Carolina and Boise State University grantPi Giddings labInst University of North Carolina / Boise State University labPi Giddings labPiFull Morgan Giddings organism human term UChicago tag UCHICAGO type lab label White - UChicago description White - University of Chicago grantPi White labInst University of Chicago labPi White labPiFull Kevin White organism human ### Gilbert lab term FSU tag FSU type lab label Gilbert - FSU description Gilber - The Florida State University grantPi Gilbert labInst The Florida State University labPi Gilbert labPiFull David Gilbert organism human ### Mouse labs term LICR-m tag LICRm type lab label Ren - LICR description Ren - Ludwig Institue for Cancer Research grantPi Ren labInst Ludwig Institue for Cancer Research labPi Ren labPiFull Bing Ren organism mouse term Caltech-m tag CALTECHm type lab label Wold - CalTech description Wold - Califonia Institute of Technology grantPi Hardison labInst Caltech labPi Wold labPiFull Barbara Wold organism mouse term CRG-Guigo-m tag CRG type lab label Guigo - CGR, Barcelona description Guigo - CGR, Barcelona grantPi Gingeras labInst Genome Center for Genomic Regulation, Barcelona labPi Guigo labPiFull Roderic Guigo organism mouse term UMass-m tag UMASSm type lab label Dekker - UMass description Dekker - University of Massachusettes grantPi Hardison labInst University of Massachusettes labPi Dekker labPiFull Job Dekker organism mouse term Duke-m tag DUKEm type lab label Crawford - Duke description Crawford - Duke University grantPi Hardison labInst Duke University labPi Crawford labPiFull Greg Crawford organism mouse term PSU-m tag PSUm type lab label Hardison - PSU description Hardison - Penn State University grantPi Hardison labInst PSU labPi Hardison labPiFull Ross Hardison organism mouse term UW-m tag UWm type lab label Stamatoyannopoulous - UW description Stamatoyannopoulous - University of Washington grantPi Stam labInst University of Washington labPi Stam labPiFull George Stamatoyannopoulous organism mouse term Stanford-m tag STANFORDm type lab label Snyder - Stanford description Snyder - Stanford University grantPi Snyder labInst Stanford labPi Snyder labPiFull Michael Snyder organism mouse term Yale-m tag YALEm type lab label Weissman - Yale description Weissman - Yale University grantPi Snyder labInst Yale labPi Weissman labPiFull Sherman Weissman organism mouse term FSU-m tag FSUm type lab label Gilbert - FSU description Gilber - The Florida State University grantPi Gilbert labInst The Florida State University labPi Gilbert labPiFull David Gilbert organism mouse term CSHL-m tag CSHLm type lab label Gingeras - CSHL description Gingeras - Cold Spring Harbor Laboratory grantPi Gingeras labInst Cold Spring Harbor Laboratory labPi Gingeras labPiFull Thomas Gingeras organism mouse ### AWG (DAC) Labs term DAC-Stanford tag DACSTANF type lab label Batzoglou & Sidow - Stanford description Batzoglou & Sidow - Stanford University grantPi Birney labInst Stanford labPi Birney labPiFull Ewan Birney organism human term AWG tag AWG type lab label Analysis Working Group description ENCODE Analysis Working Group grantPi Birney labInst EBI labPi Birney labPiFull Ewan Birney organism human # Grant information # term is the last name of the PI # grantInst Is the full name of the institution # projectName is the name we use to call the project term Bernstein tag BERNSTEIN type grant description Bernstein grantInst Broad Institute projectName Broad term Birney tag BIRNEY type grant description Birney grantInst ENCODE Data Analysis Center (DAC) projectName DAC term Tullius tag TULLIUS type grant description Tullius grantInst Boston University projectName BU term Ruan tag RUAN type grant description Yijun Ruan grantInst Genome Institute of Singapore projectName ChIA-PET term Hubbard tag HUBBARD type grant description Hubbard grantInst Sanger Institute projectName Sanger term Tenenbaum tag TENENBAUM type grant description Tenenbaum grantInst SUNY-Albany projectName SUNY term Stam tag STAM type grant label Stamatoyannopoulous description Stamatoyannopoulous grantInst University of Washington projectName UW term Crawford tag CRAWFORD type grant description Crawford grantInst Duke projectName OpenChrom term Myers tag MYERS type grant description Myers grantInst Hudson Alpha Institute of Biotechnology projectName HAIB term Elnitski tag ELNITSKI type grant description Elnitski grantInst National Human Genome Research Institute projectName NHGRI-Elnitski term Kent tag KENT type grant description Kent grantInst UCSC projectName UCSC term Margulies tag MARGULIES type grant description Margulies grantInst National Human Genome Research Institute projectName NHGRI-Margulies term Gingeras tag GINGERAS type grant description Gingeras grantInst Cold Spring Harbor Laboratory projectName Transcriptome term Dekker tag DEKKER type grant description Dekker grantInst University of Massachusetts Amherst projectName UMass-Dekker term Weng tag WENG type grant description Weng grantInst University of Massachusetts Amherst projectName UMass-Weng term Snyder tag SNYDER type grant description Snyder grantInst Stanford projectName SYDH term Ren tag REN type grant description Ren grantInst LICR projectName LICR term Hardison tag HARDISON type grant description Hardison grantInst Penn State University projectName PSU term White tag WHITE type grant description White grantInst University of Chicago projectName UChicago term Giddings tag GIDDINGS type grant description Giddings grantInst University of North Carolina projectName UNC-Giddings term Gilbert tag GILBERT type grant description Gilbert grantInst The Florida State University projectName FSU ################################################################################################################# ############# Definition of all term types in cv.ra and most other terms that are in the metaDb ############# ################################################################################################################# # This is a very important table of definitions which may be used by CGIs, but will not get into the MDB # # Definition of specialized settings: # searchable [no/select/date/numeric] DEFAULT: NO # select: drop-down selection of values discovered in mdb # multiSelect: drop-down check-box list allowing selection of multiple values (e.g. [GM12878,K562] means search for either) # freeText: searches by free text accept the wild card '%' and any subset of text # wildList: one or more values delimited by commas ('%' wildcards accepted) # date: by less than or greater than date range (not yet implemented) # numeric: numeric by range (not yet implemented) # # cvDefined [no/yes] DEFAULT: NO. Yes when every possible value must be in cv.ra # # hidden [no/yes/beta,public DEFAULT: no. Yes when users should not see this internal metadata. # use comma delimited list of alpha,beta,public to restrict visibility from certain machines. # # validate [cv/date/exists/float/integer/list:/none/regex:] outlines the expected values. ENFORCED by mdbPrint -validate # cv: must be defined term in cv (e.g. cell=GM12878). "cv or None" indicates that "None is also acceptable. # "cv or control" indicates that cv-defined terms of type "control" are also acceptable. # date: must be date in YYYY-MM-DD format # exists: not enforced. (e.g. fileName could be validated to exist in download directory) # float: must be floating point number # integer: must be integer # "list:": must be one of several terms in comma delimeited list (e.g. "list: yes,no,maybe" ) # ("list:" includes colon) # none: not validated in any way #"regex:": must match regular expression (e.g. "regex: ^GS[M,E][0-9]$" ) # ("regex:" includes colon) # # NOTE: that validate rules may end comment delimited by a '#' # # priority Like in trackDb.ra this is used for enforcing a sort order in certain circumstances, with lower numbers implying greater priority. # At beginnning: # 10s: objStatus:1 project:10 grant:15 lab:20 composite:25 dataType:30 view:35 # Experiment defining: # 100s: expId:100 cellType:110 strain:120 sex:130 age:140 localization:150 rnaExtract:160 readType:165 insertLength:166 phase:170 treatment:180 Antibody:190 attic:190 # Undefine: # 200s: protocol:200 restrictionEnzyme:220 control:230 replicate:240 dccRep:241 submittedDataVersion:250 # DCC descriptive: # 300s: origAssembly:305 dataVersion:310 dccAccession:312 dateSubmitted:315 dateResubmitted:320 dateUnrestricted:325 subId:335 geoSeriesAccession:340 geoSampleAccession:345 setType:350 controlId:355 # Lab descriptive: # 400s: labExpId:410 bioRep:415 labVersion:430 mapAlgorithm:430 platform:430 seqPlatform:430 spikeInPool:430 softwareVersion:440 privacy:450 category:470 tissueSourceType:470 # Miscellaneous junk which will be put into the 500 pot which will sort near the end: # 500s: typeOfTerm:500 accession:500 expVars:500 obtainedBy:500 region:500 size:500 promoter:500 annotation:590 fragLength:590 fragSize:590 level:590 uniqueness:590 # At End: # 900s: dccInternalNotes:910 sourceObj:921 tableName:970 fileName:980 type:985 md5sum:999 term typeOfTerm tag TYPEOFTERM type typeOfTerm label Term types defined cvDefined yes description Types of terms used frequently in controlled vocabulary or metadata should be defined here. hidden yes optionalVars label,hidden,requiredVars,optionalVars,deprecated priority 500 requiredVars term,tag,type,description,searchable,cvDefined,validate,priority searchable no validate cv term accession tag ACCESSION type typeOfTerm label GEO accession number provided by lab cvDefined no description A generic GEO accession number provided by the producing lab. hidden yes optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate regex: ^GS[M,E][0-9]*$ term age tag AGE type typeOfTerm label Age of donor organism cvDefined yes description The age of the organism used to produce tissue or cell line. optionalVars label,deprecated priority 140 requiredVars term,tag,type,description,stage searchable multiSelect validate cv term annotation tag ANNOTATION type typeOfTerm label GENCODE annotation. cvDefined no deprecated No longer neede by GENCODE description GENCODE specifies if an annotation is done manually or automatically. optionalVars label,validation,targetUrl,displayName,deprecated priority 590 requiredVars term,tag,type,target,antibodyDescription,targetDescription,vendorName,vendorId,orderUrl,targetId,lab searchable no validate list: manual,automatic term Antibody tag ANTIBODY type typeOfTerm label Antibody or target protein cvDefined yes description The antibody to a specific protein. Used in immuno-precipitation to target certain fractions of biological interest. optionalVars label,validation,targetUrl,lots,deprecated,targetClass priority 190 requiredVars term,tag,type,target,antibodyDescription,targetDescription,vendorName,vendorId,orderUrl,targetId,lab searchable multiSelect validate cv or control term attic tag ATTIC type typeOfTerm label Is this auxillary data cvDefined yes description Indicates file status as in the attic or not, hosted for download only, it is an internal piece of metaData. hidden yes optionalVars label,deprecated priority 190 requiredVars term,tag,type,description searchable no validate cv term bioRep tag BIOREP type typeOfTerm label Cross Lab Bio-Replicate ID cvDefined no description Cross lab sample ID number used to track biological replicates. optionalVars label,deprecated priority 415 requiredVars term,tag,type,description searchable no validate none term category tag CATEGORY type typeOfTerm label Cell type category cvDefined yes description Cell type category, such as T for tissue, L for cell line, P for primary cells hidden yes optionalVars label,deprecated priority 470 requiredVars term,tag,type,description searchable no validate cv term cellType tag CELLTYPE type typeOfTerm label Cell, tissue or DNA sample cvDefined yes description Cell line or tissue used as the source of experimental material. optionalVars label,tissue,vendorId,karyotype,lineage,termUrl,color,protocol,category,lots,lab,age,deprecated,childOf priority 110 requiredVars term,tag,type,description,organism,vendorName,orderUrl,sex,tier,termId searchable multiSelect validate cv or None term composite tag COMPOSITE type typeOfTerm label UCSC Composite Track cvDefined no description Related tracks in the UCSC Genome Browser are often grouped into a named composite track. optionalVars label,deprecated priority 025 requiredVars term,tag,type,description searchable no validate regex: ^wgEncode.*$ term control tag CONTROLi type typeOfTerm label Control or Input for ChIP-seq cvDefined yes description The type of control (or 'input') used in ChIP-seq experiments to remove background noise before peak calling. optionalVars label,deprecated priority 230 requiredVars term,tag,type,description searchable multiSelect validate cv term controlId tag CONTROLID type typeOfTerm label ControlId - explicit relationship cvDefined no description This ID is used to explicitly tie a ChIP-seq experiment with the control/input that was used in peak calling. The specification may be a labExpId or a UCSC docId or a list of variables that uniquely define an experiment. optionalVars label,deprecated priority 355 requiredVars term,tag,type,description searchable no validate none term dataGroup tag DATAGROUP type typeOfTerm label Experiment (Assay) group cvDefined no description The larger groupings of dataTypes. optionalVars label,deprecated priority 030 requiredVars term,tag,type,description searchable no validate none term dataType tag DATATYPE type typeOfTerm label Experiment (Assay) type cvDefined yes description The types of experiments such as ChIP-seq, DNAse-seq and RNA-seq. optionalVars label,deprecated priority 030 requiredVars term,tag,type,description,label,dataGroup searchable multiSelect validate cv term dataVersion tag DATAVERSION type typeOfTerm label ENCODE Data Freeze cvDefined no description The ENCODE project declares specific data freezes for data to be used in papers or analysis. optionalVars label,deprecated priority 310 requiredVars term,tag,type,description searchable multiSelect validate none term dateResubmitted tag DATERESUBMITTED type typeOfTerm label Date resubmitted to UCSC cvDefined no description Submitted data that was remapped to a new assembly, found to have errors or otherwise needed to be updated will have a date of resubmission. optionalVars label,deprecated priority 320 requiredVars term,tag,type,description searchable date validate date term dateSubmitted tag DATESUBMITTED type typeOfTerm label Date submitted to UCSC cvDefined no description Date that a particular file was originally submitted to the UCSC Genome Browser. optionalVars label,deprecated priority 315 requiredVars term,tag,type,description searchable date validate date term dateUnrestricted tag DATEUNRESTRICTED type typeOfTerm label Date restrictions end cvDefined no description ENCODE data is made publicly available but with restrictions on use for the first nine months since date submitted. After this date, the data is unrestricted. optionalVars label,deprecated priority 325 requiredVars term,tag,type,description searchable date validate date term dccAccession tag DCCACCESSION type typeOfTerm label UCSC Accession cvDefined no description The accession number provided by the UCSC Genome Browser. optionalVars label,deprecated priority 312 requiredVars term,tag,type,description searchable wildList validate regex: ^\(wgEncodeE[H,M][0-9]*, *\)*wgEncodeE[H,M][0-9]*$ term dccInternalNotes tag DCCINTERNALNOTES type typeOfTerm label Internal DCC Notes cvDefined no description Notes about tracks that are internal to the DCC. RELOAD will be used to indicate that the table was reloaded with the same content, but with a corrected .as file. hidden yes optionalVars label,deprecated priority 910 requiredVars term,tag,type,description searchable no validate none term dccRep tag DCCREP type typeOfTerm label UCSC replicate number cvDefined no description This replicate number is based on submission to the UCSC browser, it may not reflect the replicate number assigned by the contributing lab. hidden no optionalVars label,deprecated priority 241 requiredVars term,tag,type,description searchable yes validate integer term donorId tag DONOR type typeOfTerm label Donor ID cvDefined no description The identification of the donor of the tissue sample. hidden no priority 241 searchable no validate none term expId tag EXPID type typeOfTerm label Experiment ID cvDefined no description The ENCODE DCC experiment identification number. hidden beta,public optionalVars label,deprecated priority 100 requiredVars term,tag,type,description searchable wildList validate integer term expVars tag EXPVARS type typeOfTerm label Experimental variables cvDefined no description Experiment defining variables for a given ENCODE composite set of tracks. hidden yes optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate none term fileName tag FILENAME type typeOfTerm label File Name for downloading cvDefined no description The name of a downloadable file associated with a particular track in the browser. optionalVars label,deprecated priority 980 requiredVars term,tag,type,description searchable no validate exists term files tag FILES type typeOfTerm label DDF defined files cvDefined no description The name of the files defined in the DDF by the lab priority 990 searchable no validate none term fragLength tag FRAGLENGTH type typeOfTerm label Mean Length of DNA fragments cvDefined no description DNA libraries built for ChIP-seq and similar experiments often involve fragmenting the DNA into lengths close to this size. optionalVars label,deprecated priority 590 requiredVars term,tag,type,description searchable no validate integer term fragSize tag FRAGSIZE type typeOfTerm label Length of GIS DNA PET fragments cvDefined yes description length of GIS DNA PET fragments, which has different values than fragLength optionalVars label,deprecated priority 590 requiredVars term,tag,type,description searchable no validate regex: ^[0-9]*k$ term geoSampleAccession tag GEOSAMPLE type typeOfTerm label GEO sample accession cvDefined no description GEO sample accession number applied to a single data set in a series of related data sets. optionalVars label,deprecated priority 345 requiredVars term,tag,type,description searchable wildList validate regex: ^GSM[0-9]*$ term geoSeriesAccession tag GEOSERIES type typeOfTerm label GEO series accession cvDefined no description GEO series accession number applied to all data sets in a related series. optionalVars label,deprecated priority 340 requiredVars term,tag,type,description searchable wildList validate regex: ^GSE[0-9]*$ term grant tag GRANT type typeOfTerm label Principal Investigator on grant cvDefined yes description Principle investigator holding the grant by which a set of experiments are financed. Several labs led by other PI's may be under one grant. optionalVars label,deprecated priority 015 requiredVars term,tag,type,description,grantInst,projectName searchable multiSelect validate cv term insertLength tag INSERTLENGTH type typeOfTerm label Insertion length cvDefined yes description The length of the insertion for paired reads for RNA-seq experiments. optionalVars label,deprecated priority 166 requiredVars term,tag,type,description searchable no validate cv or None term lab tag LAB type typeOfTerm label Lab producing data cvDefined yes description The name of the lab producing the data. Often many labs are working together under one grant or one project. optionalVars label,labInst,labPiFull,grantPi,deprecated priority 020 requiredVars term,tag,type,description,organism,labPi searchable multiSelect validate cv term labExpId tag LABEXPID type typeOfTerm label Lab provided identifier cvDefined no description An ID provided by a lab that uniquely identifies an experiment (dataset) to that lab. optionalVars label,deprecated priority 410 requiredVars term,tag,type,description searchable wildList validate none term labProtocolId tag LABPROTOCOLID type typeOfTerm label Lab specific protocol ID cvDefined no description Some labs produce experiments under multiple defined protocols which may or may not be experiment altering, but which should be recorded all the same. optionalVars label,deprecated priority 420 requiredVars term,tag,type,description searchable no validate none term labVersion tag LABVERSION type typeOfTerm label Lab specific details cvDefined no description Free text field for labs to record miscellaneous details of their experiments and submitted data sets. optionalVars label,deprecated priority 430 requiredVars term,tag,type,description searchable freeText validate none term level tag LEVEL type typeOfTerm label GENCODE level cvDefined no deprecated no longer needed by GENCODE description GENCODE level of annotation. Level 1: validated. Level 2: manually annotated. Level 3: automated annotation. optionalVars label,deprecated priority 590 requiredVars term,tag,type,description searchable no validate list: 1,2,3,1-2 term localization tag LOCALIZATION type typeOfTerm label Cellular compartment cvDefined yes description The cellular compartment from which RNA is extracted. Primarily used by the Transcriptome Project. optionalVars label,deprecated priority 150 requiredVars term,tag,type,description,termId,termUrl searchable multiSelect validate cv term mapAlgorithm tag MAPALGORITHM type typeOfTerm label Mapping algorithm cvDefined yes description Algorithm used in high-throughput sequencing experiments to map sequenced tags to a particular location in the reference genome. optionalVars label,deprecated priority 430 requiredVars term,tag,type,description searchable multiSelect validate cv term md5sum tag MD5SUM type typeOfTerm label md5sum #This can either be a valid md5sum 920afe925b7f7b4d7617ef538160579c with 32 digits #in the case of bam files, it can be a pair bam=2aac07f3f113b5bd708915081eb1a11d,bai=0da3b2adf4f21d5bb50e7cae31b91f2c cvDefined no description The md5sum for the file associated with the object. optionalVars label,deprecated priority 999 requiredVars term,tag,type,description searchable no validate regex: ^\([0-9a-f]\{32\},\)*[0-9a-f]\{32\}$ term objStatus tag OBJSTAT type typeOfTerm label Object Status cvDefined no description The status of the file or table object (revoked, replaced, etc) hidden no optionalVars label,deprecated priority 1 requiredVars term,tag,type,description searchable no validate regex: ^renamed\|replaced\|revoked - .*$ term obtainedBy tag OBTAINEDBY type typeOfTerm label Obtained by cvDefined no description The production group that grew the cells and isolated genomic DNA. optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable multiSelect validate none term organism tag ORGANISM type typeOfTerm label Organism cvDefined yes description The type of organism for an experiment. optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate cv term origAssembly tag ORIGASSEMBLY type typeOfTerm label Assembly originally mapped to cvDefined no description Some experiments are originally performed and mapped to an earlier assembly of the reference genome and then are remapped or lifted over to a more recent assembly. optionalVars label,deprecated priority 305 requiredVars term,tag,type,description searchable multiSelect validate list: hg18,hg19,mm9 term phase tag PHASE type typeOfTerm label Cell phase cvDefined yes description The phase in a cell cycle that corresponds to a defined DNA content range determined by flow cytometry measurements that includes G1 (gap phase 1), S phase (the DNA synthesis phase), and G2/M (the gap 2 and mitosis phases; here abbreviated G2). Different portions of S phase are obtained by dividing the cell cycle into seven DNA content windows based on the relative peak positions corresponding to the G1 and G2 cell cycle fractions. The G1 peak position is routinely set at "60" relative UV fluorescence, thus producing G2 peak values in the 116-120 range optionalVars label,deprecated priority 170 requiredVars term,tag,type,description searchable no validate cv or None term platform tag PLATFORM type typeOfTerm label Platform cvDefined yes description Platform used in experiment. optionalVars label,geoPlatformName,deprecated priority 430 requiredVars term,tag,type,description searchable multiSelect validate cv term project tag PROJECT type typeOfTerm label Project funded by cvDefined no description Project that funded this and a related set of experiments. optionalVars label,deprecated priority 010 requiredVars term,tag,type,description searchable no validate list: wgEncode term promoter tag PROMOTER type typeOfTerm label Promoter cvDefined yes description Target Promoter optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate cv term protocol tag PROTOCOL type typeOfTerm label Library Protocol cvDefined yes description Lab specific protocol that may cover a number of steps in an experiment. Most typically this identifies methods for building a DNA or RNA library. optionalVars label,deprecated priority 200 requiredVars term,tag,type,description searchable multiSelect validate cv or None term quality tag QUALITY type typeOfTerm label Integrated quality flag cvDefined yes description Quality assessment based on multiple metrics; manually curated based on automatic flagging optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate cv term readType tag READTYPE type typeOfTerm label Paired/Single reads lengths cvDefined yes description Specific information about cDNA sequence reads including length, directionality and single versus paired read. optionalVars label,deprecated priority 165 requiredVars term,tag,type,description searchable multiSelect validate cv term region tag REGION type typeOfTerm label Genomic region(s) cvDefined yes description Genomic region(s) targeted by an experiment that is not whole-genome optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable multiSelect validate cv or None term replicate tag REPLICATE type typeOfTerm label Replicate number cvDefined no description The biological replicate of a particular experiment. optionalVars label,deprecated priority 240 requiredVars term,tag,type,description searchable multiSelect validate integer term restrictionEnzyme tag RESTRICTIONENZYME type typeOfTerm label Restriction Enzyme used cvDefined yes description The restriction enzyme used in an experiment, typically for DNA library preparation for a high-throughput sequencing experiment. optionalVars label,deprecated priority 220 requiredVars term,tag,type,description searchable no validate cv or None term rnaExtract tag RNAEXTRACT type typeOfTerm label RNA Extract cvDefined yes description Fraction of total cellular RNA selected for by an experiment. This includes size fractionation (long versus short) and feature frationation (PolyA-, PolyA+, rRNA-). optionalVars label,deprecated priority 160 requiredVars term,tag,type,description searchable multiSelect validate cv term seqPlatform tag SEQPLATFORM type typeOfTerm label Sequencing Platform cvDefined yes description Sequencing platform used in high-throughput sequencing experiment. optionalVars label,geoPlatformName,deprecated priority 430 requiredVars term,tag,type,description searchable multiSelect validate cv term setType tag SETTYPE type typeOfTerm label Experiment or Input cvDefined no description ChIP-seq experiments often require 'input' or control results to be subtracted from the experimental results. This term clearly identifies which datasets are being used as the experiment and which are the input. optionalVars label,deprecated priority 350 requiredVars term,tag,type,description searchable multiSelect validate list: exp,input,control term sex tag SEX type typeOfTerm label Sex of donor organism cvDefined yes description The sex of a cell line or tissue sample affects the genome target of an experiment. optionalVars label,deprecated priority 130 requiredVars term,tag,type,description searchable multiSelect validate cv term size tag SIZE type typeOfTerm label Mappability windowing size cvDefined no description The windowing size used, typically in a whole genome computational analysis and characterization dataset. optionalVars label,deprecated priority 500 requiredVars term,tag,type,description searchable no validate regex: ^[0-9]*mer$ term softwareVersion tag SOFTWAREVERSION type typeOfTerm label Lab specific informatics cvDefined no description A free-text field for a lab to declare the software and computational methods used in an experiment. optionalVars label,deprecated priority 440 requiredVars term,tag,type,description searchable freeText validate none term sourceObj tag SOURCEOBJ type typeOfTerm label Source Objects cvDefined no description Objects this object was built with. optionalVars label,deprecated priority 921 requiredVars term,tag,type,description searchable no validate none term spikeInPool tag SPIKEINPOOL type typeOfTerm label Spike-In Pool cvDefined no description The spike-in pool that was used. optionalVars label,deprecated priority 430 requiredVars term,tag,type,description searchable no validate none term strain tag STRAIN type typeOfTerm label Strain of organism cvDefined yes description The strain of the donor organism used in an experiment. optionalVars label,deprecated priority 120 requiredVars term,tag,type,description searchable multiSelect validate cv term subId tag SUBID type typeOfTerm label Submission ID cvDefined no description The submission ID assigned by the UCSC Genome Browser at time of actual data submission. optionalVars label,deprecated priority 335 requiredVars term,tag,type,description searchable no validate integer term submittedDataVersion tag SUBMITTEDDATAVERSION type typeOfTerm label Version of data if resubmitted cvDefined no description When submitted data has been publicly released in the Genome Browser, but subsequently corrected and re-released, this data version will advance from the implicit V1. optionalVars label,deprecated priority 250 requiredVars term,tag,type,description searchable no validate regex: ^V[2-9]\+ \- .*$ term tableName tag TABLENAME type typeOfTerm label Table name at UCSC cvDefined no description Downloadable files containing data displayed in tracks in the UCSC Genome Browser are often stored in SQL tables. The particular table can be located by this name. optionalVars label,deprecated priority 970 requiredVars term,tag,type,description searchable freeText validate exists # this is a dummy typeOfTerm -- there are no stanzas of type target. # The actual target values appear in the Antibody term stanzas. # The typeOfTerm stanza here is here just to allow validator to accept target objects in metaDb. term target tag TARGET type typeOfTerm label Antibody target cvDefined no description The gene targeted by an antibody optionalVars label priority 150 requiredVars term,tag,type searchable no validate none term targetClass tag TARGETCLASS type typeOfTerm label Antibody target class cvDefined yes description The genes targeted by antibodies are classified by the biological function of the gene products. optionalVars label priority 150 requiredVars term,tag,type searchable freeText validate cv term treatment tag TREATMENT type typeOfTerm label Treatment cvDefined yes description Treatment used as an experimental variable in a series of experiments. optionalVars label,deprecated priority 180 requiredVars term,tag,type,description searchable multiSelect validate cv or None term tier tag TIER type typeOfTerm label Cell Tier cvDefined no description ENCODE Cell Tier optionalVars label,deprecated priority 999 requiredVars term,tag,type,description searchable no validate integer term tissueSourceType tag TISSUESOURCETYPE type typeOfTerm label Tissue Source Type cvDefined yes description Source of tissue from either an indiviual organism or pooled set of organisms optionalVars label,deprecated priority 470 requiredVars term,tag,type,description searchable multiSelect validate cv or None term type tag TYPE type typeOfTerm label File type cvDefined no description The type of the primary file associated with the object optionalVars label,deprecated priority 985 requiredVars term,tag,type,description searchable no validate none term uniqueness tag UNIQUENESS type typeOfTerm label Mappability Distinctions cvDefined no description Degree of region uniqueness or mappability disctinctions optionalVars label,deprecated priority 590 requiredVars term,tag,type,description searchable no validate none term view tag VIEW type typeOfTerm label View - Peaks or Signals cvDefined yes description Different track formats often allow different views of the data of a single experiment. These views sometimes represent different stages of processing, such as experimental 'signal' resulting directly from high-throughput sequencing and called 'peaks' which result from further analysis. optionalVars label,deprecated priority 035 requiredVars term,tag,type,description,label searchable multiSelect validate cv