53ab3f1e293a91ddf71ec7568f4a6ff827bcd278
lrnassar
  Fri Oct 2 13:52:36 2026 -0700
Native GPN-Star track (Ye, Benegas et al., Nature 2026) on hg38, mm39, galGal6, dm6 and ce11, from the authors' Hugging Face hub. Each model is a multiWig sequence logo plus a four-allele -LLR composite using negateValues. The three hg38 models (V/M/P) sit in predictionScoresSuper via human/gpnStar.ra with /gbdb/$D bigDataUrls so -strict drops them on other human assemblies; the other four get a standalone gpnStar superTrack. The authors' bigWigs come from pyBigWig, whose bwAddIntervalSpanSteps writes the last section of each run 6 bases too long (pyBigWig #166) and makes bigWigAverageOverBed and bigWigCorrelate abort, so gpnStarRebuild.sh re-encodes them with wigToBigWig and gpnStarVerify.sh checks every per-base value is unchanged. Entropy scores and the GenArk-only Arabidopsis set are left out, and pennantIcon still has #TBD placeholders for the newsarch anchor and date. refs #38451

diff --git src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
index f07122ff079..ea654933584 100644
--- src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
+++ src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
@@ -1,56 +1,58 @@
 # Local declaration so that local gold.html is picked up.
 track gold override
 html gold
 
 searchTable gold
 searchMethod prefix
 searchType bed
 shortCircuit 1
 termRegex [ACDK][EJPS][0-9]+(\.[0-9]+)*
 query select chrom,chromStart,chromEnd,frag from %s where frag like '%s%%'
 searchPriority 8
 
 # Local declaration so that local gap.html is picked up.
 track gap override
 visibility hide
 html gap
 
 track genscan override
 visibility hide
 
 track cytoBandIdeo
 shortLabel Chromosome Band (Low-res)
 longLabel Chromosome Bands (Low-resolution for Chromosome Ideogram)
 group map
 priority .1
 visibility dense
 altColor 200,150,150
 type bed 4 +
 
 track cytoBand
 shortLabel Chromosome Band
 longLabel Chromosome Bands
 group map
 priority .1
 visibility hide
 altColor 200,150,150
 type bed 4 +
 
 include trackDb.27way.ra
 include flyBaseGene.ra alpha
 
 track spMut override
 group varRep
 bigDataUrl /gbdb/$D/uniprot/unipMut.bb
 
 include ../../refSeqComposite.ra
 
 include trackDb.124way.ra 
 include trackDb.124wayMafNet.ra
 include trackDb.124wayRbest.ra 
 include trackDb.124waySyn.ra 
 include chainNetInsects.ra
 include chainNetSynInsects.ra
 include chainNetRBestInsects.ra
 include ../../crispr10K.ra alpha
 include reMap.ra
+
+include gpnStar.ra alpha