f2ef97844c0973a30cbbc1afcdd01b4096143a69
lrnassar
  Wed Jun 3 10:56:07 2026 -0700
Add date-based dataVersion to composite/superTrack otto containers. refs #36455

Composite and superTrack container pages do not display 'Data last updated at
UCSC' (printUpdateTime returns early for them), so a dataVersion file is the
only freshness signal a user sees there. Add one to the dbVar (dbVarSv),
panelApp, clinGen (clinGenComp) and decipher (decipherContainer) containers.

Each otto build script writes a per-assembly 'Last updated <date>' file when it
actually updates the data, and the container stanza points to it via dataVersion.
clinGen's container date is written by its three displayed feeds (makeDosage,
makeGeneValidity, makeClinGenCspec); decipher writes hg38 only (hg19 is frozen).

diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index 8a246ad99b1..0a19cfd94be 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,79 +1,80 @@
 track decipherContainer
 superTrack on
 shortLabel DECIPHER
 longLabel DECIPHER
 cartVersion 7
 group phenDis
+dataVersion /gbdb/$D/decipher/version.txt
 
     track decipher
     priority 1
     shortLabel DECIPHER CNVs
     longLabel DECIPHER CNVs
     group phenDis
     visibility pack
     type bigBed 9 +
     itemRgb on
     tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
     bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
     url https://www.deciphergenomics.org/patient/$$
     urlLabel Decipher Patient View:
     filter.size 0
     filterByRange.size on
     filterLimits.size 2:170487333
     filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
     filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
     mergeSpannedItems on
     searchIndex name
     #mouseOverField _mouseOver
     mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Size of Variant</b>: $size<br> <b>Genotype</b>: $genotype<br> <b>Variant Class</b>: $variant_class<br> <b>Inheritance</b>: $inheritance<br> <b>Pathogenicity</b>: $pathogenicity<br> <b>Phenotypes</b>: $phenotypes<br>
     html decipherContainer
     parent decipherContainer
 
     track decipherSnvs
     priority 2
     shortLabel DECIPHER SNVs
     longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
     group phenDis
     visibility pack
     color 0,0,0
     type bed 4
     tableBrowser off decipherSnvsRaw
     prevExonText Left edge
     nextExonText Right edge
     html decipherContainer
     parent decipherContainer
 
     track decipherPopulation
     priority 3
     parent decipherContainer
     type bigBed 9 +
     shortLabel DECIPHER Population CNVs
     longLabel DECIPHER: Population CNVs
     bigDataUrl /gbdb/$D/decipher/population_cnv.bb
     visibility pack
     mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Type of CNV</b>: $type<br> <b>Frequency of CNV</b>: $frequency<br> <b>Number of Observations</b>: $observations<br> <b>Sample Size of Study</b>: $sample_size<br>
     html decipherContainer
     searchIndex name
     noScoreFilter on
     filterValues.type loss,gain,del/dup
     filter.sample_size 0
 
 searchTable decipher
 searchMethod exact
 searchType bigBed
 
 searchTable decipherPopulation
 searchMethod exact
 searchType bigBed
 
 searchName decipherId
 searchTable decipher
 termRegex [0-9]+
 searchType bed
 searchPriority 50
 
 searchName decipherSnvsId
 searchTable decipherSnvs
 termRegex [0-9]+
 searchType bed
 searchPriority 50