198c9b8daecc44fbda6a6494c566c723920f030a
lrnassar
  Wed Mar 11 18:25:21 2026 -0700
Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM.

diff --git src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html
index 3e1fe9ea498..d7d6ca7ef95 100644
--- src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html
+++ src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html
@@ -1,65 +1,65 @@
 <H2>Overview</H2>
 <P>
 This super-track combines related tracks from Yale Transcript Map analysis.
 These tracks contain transcriptome data from different
 cell lines and biological samples as well as analysis of transcriptionally
 active regions (TARs).
 </P>
 Experiments were performed with Yale MAS (Maskless Array Synthesizer)
 ENCODE oligonucleotide microarray (see NCBI
 <A HREF="https://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL2105"
 TARGET=_blank>GEO GPL2105</A> for details of this array design) as well as
 the Affymetrix ENCODE oligonucleotide microarray. Multiple biological samples 
 were assayed, such as total RNA from human NB4 cells. Experiments also included 
 chemical treatments such as retinoic acid (RA) treatments.
 
 <H2>Credits</H2>
 <H3>Yale MAS RNA, Yale MAS TAR</H3>
 <P>
-These data were generated and analyzed by the the labs of Michael Snyder,
+These data were generated and analyzed by the labs of Michael Snyder,
 Mark Gerstein and Sherman Weissman at Yale University.</P>
 
 <H3>Yale RNA, Yale TAR</H3>
 <P>
 These data were generated and analyzed by the Yale/Affymetrix
 collaboration among the labs of Michael Snyder, Mark Gerstein and
 Sherman Weissman at Yale University and Tom Gingeras at Affymetrix.</P>
 
 <H3>Yale RACE</H3>
 <P>
 These data were generated and analyzed by the lab of Mark Gerstein 
 at Yale University.</P>
 
 <H2>References</H2>
 <P>
 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X,
 Rinn JL, Tongprasit W, Samanta M <em>et al</em>.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15539566&query_hl=7"
 TARGET=_blank>Global identification of human transcribed sequences with
 genome tiling arrays</A>.
 <em>Science</em>. 2004 Dec 24;306(5705):2242-6.</P>
 <P>
 Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S,
 Long J, Stern D, Tammana H <em>et al</em>.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15790807&query_hl=5"
 TARGET=_blank>Transcriptional maps of 10 human chromosomes at 5-nucleotide
 resolution</A>.
 <em>Science</em>. 2005 May 20;308(5725):1149-54.</P>
 <P>
 Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL,
 Fodor SP, Gingeras TR.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11988577&query_hl=5"
 TARGET=_blank>Large-scale transcriptional activity in chromosomes 21 and 22</A>.
 <em>Science</em>. 2002 May 3;296(5569):916-9.</P>
 <P>
 Kluger Y, Tuck DP, Chang JT, Nakayama Y, Poddar R, Kohya N,
 Lian Z, Ben Nasr A, Halaban HR <em>et al</em>.
 <A HREF="https://www.pnas.org/content/101/17/6508.full"
 TARGET=_blank>Lineage specificity of gene expression patterns</A>.
 <em>Proc Natl Acad Sci U S A</em>. 2004 Apr 27;101(17):6508-13. </P>
 <P>
 Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM,
 Hartman S, Harrison PM, Nelson FK, Miller P <em>et al.</em>
 <A HREF="https://genesdev.cshlp.org/content/17/4/529.full"
 TARGET=_blank>The transcriptional activity of human Chromosome 22</A>.
 <em>Genes Dev</em>. 2003 Feb 15;17(4):529-40. </P>