3d416983a22ec1b123e9951e3511cdcec36df0b2
lrnassar
Mon Dec 1 15:20:30 2025 -0800
More feedback from Zhiping, refs #34109
diff --git src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra
index fb7a5cd26ed..1e0a4f1e2eb 100644
--- src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra
+++ src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra
@@ -1,33 +1,33 @@
track cCREs
superTrack on show
shortLabel ENCODE cCREs
longLabel ENCODE Registry of cCREs (candidate Cis-Regulatory Elements)
group regulation
priority 1
pennantIcon New red ../goldenPath/newsarch.html#XXXXXX "XXX"
html cCREsSuper.html
track encodeCcreCombined override
parent cCREs
longLabel ENCODE3 Registry of candidate Cis-Regulatory Elements (cCREs)
priority 3
visibility hide
shortLabel ENCODE3 cCREs
pennantIcon snowflake.png ../goldenPath/newsarch.html#XXXXXX "This data represents ENCODE3 cCREs. For the latest data, see the ENCODE4 cCREs track."
track cCREregistry
shortLabel ENCODE4 cCREs
longLabel ENCODE4 Registry of candidate Cis-Regulatory Elements (cCREs)
type bigBed 9 + 5
bigDataUrl /gbdb/$D/encode4/ccre/encodeCcreRegistry.bb
visibility dense
priority 1
filterValues.cCRE_class CA|Chromatin accessibility (CA),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhance|Proximal enhance,Promoter|Promoter,TF|Transcription factor (TF)
parent cCREs
filterType.cCRE_class multipleListOr
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Max-Z: ${DNase_maxZ}
H3K4me3 Max-Z: ${H3K4me3_maxZ}
H3K27ac Max-Z: ${H3K27ac_maxZ}
CTCF Max-Z: ${CTCF_maxZ}
url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$
urlLabel cCRE details on SCREEN:
-dataVersion ENCODE Registry version 4, 2024. (ENCODE4 data includes ENCODE2 and ENCODE3)
+dataVersion ENCODE Registry version 4, 2024. (ENCODE4 data includes ENCODE2, ENCODE3, and the Roadmap Epigenomics Project)
include encode4.ccres.ra