f4d967492fedb59d2e528cf196e35c1da248ae96
lrnassar
Fri Oct 2 07:15:47 2026 -0700
Quarterly pennant cleanup: removing New/Updated pennantIcons released before July 2026 (strVar, nmd, promoterAi, primateAi, mpra, varaico). No RM.
diff --git src/hg/makeDb/trackDb/human/hg38/mpra.ra src/hg/makeDb/trackDb/human/hg38/mpra.ra
index 1130e431aac..5c7f1e1b291 100644
--- src/hg/makeDb/trackDb/human/hg38/mpra.ra
+++ src/hg/makeDb/trackDb/human/hg38/mpra.ra
@@ -1,55 +1,54 @@
track mpra
shortLabel MPRAs
longLabel Massively Parallel Reporter Assays
group regulation
visibility hide
superTrack on
-pennantIcon New red ../goldenPath/newsarch.html#060226 "Released Jun. 2, 2026"
track mprabase
shortLabel MPRA Base
longLabel MPRAs: MPRA Base Enhancer Elements
type bigBed 9 + 11
bigDataUrl /gbdb/hg38/mpra/mprabase/mprabase.bb
parent mpra on
visibility pack
priority 1
itemRgb on
dataVersion MPRA Base 2026-05-27 refresh
mouseOver Element: $name
Cell line: $cell_line
Assay: $assay
Raw score: $raw_score
Percentile rank: $percentile_rank
Citation: $citation
urls PMID="https://www.ncbi.nlm.nih.gov/pubmed/$$"
labelFields name,variant_type,cell_line,assay,author_lab
defaultLabelFields name
filterValues.cell_line HepG2,HUES64,mESC,NPC,HEK293FT,UACC903
filterValues.assay lentiMPRA (LM),plasmidMPRA (PM),STARR-seq (ST)
filterValues.variant_type alternate,NA,reference
filter.percentile_rank 0:100
filterByRange.percentile_rank on
filterLimits.percentile_rank 0:100
filterLabel.percentile_rank Filter by activity percentile rank (within experiment)
track mpraVarDb
shortLabel MPRAVarDB
longLabel MPRAs: MPRAVarDB - MPRA-tested Regulatory Variant Effects
parent mpra on
bigDataUrl /gbdb/hg38/mpra/mpravardb/mpravardb.bb
type bigBed 9 + 13
itemRgb on
visibility dense
priority 2
maxWindowToDraw 10000000
dataVersion MPRAVarDB snapshot 2026-03-10
mouseOver Variant: $name
Ref/Alt: $ref/$alt
Cell line: $cellLine
Disease/Trait: $disease
log2FC: $_mouseOverLog2FC
p-value: $_mouseOverPvalue
FDR: $_mouseOverFdr
skipFields _mouseOverLog2FC,_mouseOverPvalue,_mouseOverFdr
labelFields name,cellLine,disease
defaultLabelFields name
urls rsid="https://www.ncbi.nlm.nih.gov/snp/$$"
filterValues.cellLine GM12878,PC3 cell,HepG2,K562,Jurkat,HEK293FT,HEK293T,SKNSH,HMEC,HNPS,HEK293s,HEL92.1.7,Neuro-2a,MIN6,NIH/3T3,HEK293T,,SF7996,N2A,SH-SY5Y,HaCaT,HeLa,LNCaP,SK-MEL-28,Saos-2,MOLP8,L363,C283T,UACC903,K562+GATA1,BLA,CE,NAC,SFC
filter.fdr 0:1
filterByRange.fdr on
filterLimits.fdr 0:1
filterLabel.fdr Filter by false discovery rate
filter.log2FC -5:5
filterByRange.log2FC on
filterLimits.log2FC -5:5
filterLabel.log2FC Filter by log2 fold change (alt vs ref)