f4d967492fedb59d2e528cf196e35c1da248ae96 lrnassar Fri Oct 2 07:15:47 2026 -0700 Quarterly pennant cleanup: removing New/Updated pennantIcons released before July 2026 (strVar, nmd, promoterAi, primateAi, mpra, varaico). No RM. diff --git src/hg/makeDb/trackDb/human/hg38/mpra.ra src/hg/makeDb/trackDb/human/hg38/mpra.ra index 1130e431aac..5c7f1e1b291 100644 --- src/hg/makeDb/trackDb/human/hg38/mpra.ra +++ src/hg/makeDb/trackDb/human/hg38/mpra.ra @@ -1,55 +1,54 @@ track mpra shortLabel MPRAs longLabel Massively Parallel Reporter Assays group regulation visibility hide superTrack on -pennantIcon New red ../goldenPath/newsarch.html#060226 "Released Jun. 2, 2026" track mprabase shortLabel MPRA Base longLabel MPRAs: MPRA Base Enhancer Elements type bigBed 9 + 11 bigDataUrl /gbdb/hg38/mpra/mprabase/mprabase.bb parent mpra on visibility pack priority 1 itemRgb on dataVersion MPRA Base 2026-05-27 refresh mouseOver <b>Element</b>: $name<br><b>Cell line</b>: $cell_line<br><b>Assay</b>: $assay<br><b>Raw score</b>: $raw_score<br><b>Percentile rank</b>: $percentile_rank<br><b>Citation</b>: $citation urls PMID="https://www.ncbi.nlm.nih.gov/pubmed/$$" labelFields name,variant_type,cell_line,assay,author_lab defaultLabelFields name filterValues.cell_line HepG2,HUES64,mESC,NPC,HEK293FT,UACC903 filterValues.assay lentiMPRA (LM),plasmidMPRA (PM),STARR-seq (ST) filterValues.variant_type alternate,NA,reference filter.percentile_rank 0:100 filterByRange.percentile_rank on filterLimits.percentile_rank 0:100 filterLabel.percentile_rank Filter by activity percentile rank (within experiment) track mpraVarDb shortLabel MPRAVarDB longLabel MPRAs: MPRAVarDB - MPRA-tested Regulatory Variant Effects parent mpra on bigDataUrl /gbdb/hg38/mpra/mpravardb/mpravardb.bb type bigBed 9 + 13 itemRgb on visibility dense priority 2 maxWindowToDraw 10000000 dataVersion MPRAVarDB snapshot 2026-03-10 mouseOver <b>Variant</b>: $name<br><b>Ref/Alt</b>: $ref/$alt<br><b>Cell line</b>: $cellLine<br><b>Disease/Trait</b>: $disease<br><b>log2FC</b>: $_mouseOverLog2FC<br><b>p-value</b>: $_mouseOverPvalue<br><b>FDR</b>: $_mouseOverFdr skipFields _mouseOverLog2FC,_mouseOverPvalue,_mouseOverFdr labelFields name,cellLine,disease defaultLabelFields name urls rsid="https://www.ncbi.nlm.nih.gov/snp/$$" filterValues.cellLine GM12878,PC3 cell,HepG2,K562,Jurkat,HEK293FT,HEK293T,SKNSH,HMEC,HNPS,HEK293s,HEL92.1.7,Neuro-2a,MIN6,NIH/3T3,HEK293T,,SF7996,N2A,SH-SY5Y,HaCaT,HeLa,LNCaP,SK-MEL-28,Saos-2,MOLP8,L363,C283T,UACC903,K562+GATA1,BLA,CE,NAC,SFC filter.fdr 0:1 filterByRange.fdr on filterLimits.fdr 0:1 filterLabel.fdr Filter by false discovery rate filter.log2FC -5:5 filterByRange.log2FC on filterLimits.log2FC -5:5 filterLabel.log2FC Filter by log2 fold change (alt vs ref)