afdd5daeb07ccef3df67165f6d10e7abd4db21ff lrnassar Thu Sep 3 14:12:39 2026 -0700 Release the ENCODE Expression tracks for mm10 and mm39. refs #37001 Drop the alpha,beta release tags from all three include lines, so the container and the bigWig signal composite now ship to beta and public. Verified with tdbQuery -strict at all three release levels: no errors, and the tracks are visible at each one (320 on mm10, 3 on mm39). Point the pennantIcon at the news archive post and give it the release date: newsarch.html#090426 "Released Sep. 4, 2026", matching the convention used by the other released tracks. The liftOver pennants on the mm39 subtracks are unchanged. Add the Sep. 4 news announcement to newsarch.html and a matching entry to indexNews.html, dropping the oldest front-page item to stay at the six-item limit. The announcement links to the session at genome.ucsc.edu/s/Lou/ENCODEexpression and includes a screenshot of Gap43, whose expression rises through development and is highest in the four neural tissues. Add the screenshot image, which was previously untracked. diff --git src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra index a01913f1b08..51bc45bbf57 100644 --- src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra +++ src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra @@ -1,88 +1,88 @@ track mouseDevTimecourse superTrack on show shortLabel ENCODE Expression longLabel ENCODE developmental time course bulk RNA-seq gene expression group regulation priority 0.6 -pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD" +pennantIcon New red ../goldenPath/newsarch.html#090426 "Released Sep. 4, 2026" html mouseDevTimecourse track developmentTimecourseM4mm10TPM parent mouseDevTimecourse priority 3 type bigBarChart shortLabel Timecourse M4 TPM longLabel ENCODE mouse development time course GENCODE M4 TPM visibility hide barChartUnit TPM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_TPM_M4_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.facets singleCellColumnNames off html developmentTimecourseM4mm10TPM track developmentTimecourseM4mm10FPKM parent mouseDevTimecourse priority 4 type bigBarChart shortLabel Timecourse M4 FPKM longLabel ENCODE mouse development time course GENCODE M4 FPKM visibility hide barChartUnit FPKM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_FPKM_M4_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.facets singleCellColumnNames off html developmentTimecourseM4mm10FPKM track developmentTimecourseM21mm10TPM parent mouseDevTimecourse priority 1 type bigBarChart shortLabel Timecourse M21 TPM longLabel ENCODE mouse development time course GENCODE M21 TPM visibility pack barChartUnit TPM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_TPM_M21_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off html developmentTimecourseM21mm10TPM track developmentTimecourseM21mm10FPKM parent mouseDevTimecourse priority 2 type bigBarChart shortLabel Timecourse M21 FPKM longLabel ENCODE mouse development time course GENCODE M21 FPKM visibility hide barChartUnit FPKM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_FPKM_M21_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off html developmentTimecourseM21mm10FPKM