afdd5daeb07ccef3df67165f6d10e7abd4db21ff lrnassar Thu Sep 3 14:12:39 2026 -0700 Release the ENCODE Expression tracks for mm10 and mm39. refs #37001 Drop the alpha,beta release tags from all three include lines, so the container and the bigWig signal composite now ship to beta and public. Verified with tdbQuery -strict at all three release levels: no errors, and the tracks are visible at each one (320 on mm10, 3 on mm39). Point the pennantIcon at the news archive post and give it the release date: newsarch.html#090426 "Released Sep. 4, 2026", matching the convention used by the other released tracks. The liftOver pennants on the mm39 subtracks are unchanged. Add the Sep. 4 news announcement to newsarch.html and a matching entry to indexNews.html, dropping the oldest front-page item to stay at the six-item limit. The announcement links to the session at genome.ucsc.edu/s/Lou/ENCODEexpression and includes a screenshot of Gap43, whose expression rises through development and is highest in the four neural tissues. Add the screenshot image, which was previously untracked. diff --git src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra index 5471d6ccf2a..d7fdbb16c11 100644 --- src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra +++ src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.ra @@ -1,54 +1,54 @@ track mouseDevTimecourse superTrack on show shortLabel ENCODE Expression longLabel ENCODE developmental time course bulk RNA-seq gene expression group regulation origAssembly mm10 #pennantIcon 10.jpg ../goldenPath/help/liftOver.html "lifted from mm10" -pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD" +pennantIcon New red ../goldenPath/newsarch.html#090426 "Released Sep. 4, 2026" priority 0.6 html mouseDevTimecourse track developmentTimecourseM21mm39TPM parent mouseDevTimecourse priority 1 type bigBarChart shortLabel Timecourse M21 TPM longLabel ENCODE mouse development time course GENCODE M21 liftover TPM visibility pack barChartUnit TPM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_TPM_M21_mm39.bb barChartCategoryUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off origAssembly mm10 pennantIcon 10.jpg ../goldenPath/help/liftOver.html "lifted from mm10" html developmentTimecourseM21mm39TPM track developmentTimecourseM21mm39FPKM parent mouseDevTimecourse priority 2 type bigBarChart shortLabel Timecourse M21 FPKM longLabel ENCODE mouse development time course GENCODE M21 liftover FPKM visibility hide barChartUnit FPKM barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_FPKM_M21_mm39.bb barChartCategoryUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm39/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off origAssembly mm10 pennantIcon 10.jpg ../goldenPath/help/liftOver.html "lifted from mm10" html developmentTimecourseM21mm39FPKM