afdd5daeb07ccef3df67165f6d10e7abd4db21ff lrnassar Thu Sep 3 14:12:39 2026 -0700 Release the ENCODE Expression tracks for mm10 and mm39. refs #37001 Drop the alpha,beta release tags from all three include lines, so the container and the bigWig signal composite now ship to beta and public. Verified with tdbQuery -strict at all three release levels: no errors, and the tracks are visible at each one (320 on mm10, 3 on mm39). Point the pennantIcon at the news archive post and give it the release date: newsarch.html#090426 "Released Sep. 4, 2026", matching the convention used by the other released tracks. The liftOver pennants on the mm39 subtracks are unchanged. Add the Sep. 4 news announcement to newsarch.html and a matching entry to indexNews.html, dropping the oldest front-page item to stay at the six-item limit. The announcement links to the session at genome.ucsc.edu/s/Lou/ENCODEexpression and includes a screenshot of Gap43, whose expression rises through development and is highest in the four neural tissues. Add the screenshot image, which was previously untracked. diff --git src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra index 527303f822a..67a486901a4 100644 --- src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra +++ src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra @@ -1,75 +1,75 @@ -include mouseDevTimecourse.ra alpha,beta +include mouseDevTimecourse.ra # Local declaration so that local gold.html is picked up. track gold override html gold # Local declaration so that local gap.html is picked up. track gap override html gap #track chainNetCalJac4 override #chainMinScore 3000 #track ensGene override #priority 2.02 track xenoRefGene override visibility hide #priority 2.03 track mrna override priority 2.1 searchTable gold shortCircuit 1 termRegex [ABCFLM][ACEFGHLNOPQRTUXY][AEKJQR0-9]+(\.[0-9_]+)? query select chrom,chromStart,chromEnd,frag from %s where frag like '%s%%' searchPriority 8 #include evaSnp.ra include xenoRefGene.ra include trackDb.35way.ra include trackDb.chainNet.ra include trackDb.syntenicNet.ra alpha include trackDb.rbestNet.ra alpha include trackDb.gencode.ra include knownGene.ra include knownGeneArchive.ra include reMap.ra include liftOverMm10.ra track vistaEnhancersBb shortLabel VISTA Enhancers longLabel VISTA Enhancers group regulation url https://enhancer.lbl.gov/vista/element?vistaId=$$ type bigBed 9 + mouseOverField patternExpression urlLabel View on the VISTA Enhancer Browser bigDataUrl /gbdb/mm39/vistaEnhancers/vistaEnhancers.bb itemRgb on include ../refSeqComposite.mm10.mm39.ra include cytoBand.ra track ucscGenePfam override shortLabel Pfam in GENCODE longLabel Pfam Domains in GENCODE Genes html gencodePfam include vgp577way.trackDb.ra alpha include tad.ra alpha track dnaMethylation superTrack on shortLabel DNA Methylation longLabel DNA Methylation group regulation priority 3 html dnaMethylation.html include methbase2.ra alpha