a19ed7de71135030a5f88e8bc7098db99fa3e96a
markd
  Mon Jun 8 09:27:19 2026 -0700
*** empty log message ***

diff --git src/hg/blastToPsl/tests/input/blastn-ncbi-seqs.xml src/hg/blastToPsl/tests/input/blastn-ncbi-seqs.xml
new file mode 100644
index 00000000000..19cd8a707af
--- /dev/null
+++ src/hg/blastToPsl/tests/input/blastn-ncbi-seqs.xml
@@ -0,0 +1,118 @@
+<?xml version="1.0" encoding="US-ASCII"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+  <BlastOutput_program>blastn</BlastOutput_program>
+  <BlastOutput_version>BLASTN 2.17.0+</BlastOutput_version>
+  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
+  <BlastOutput_db>../../data/genomes/GCA_046629575.1_NA20762_hap2_hprc_f2/blast/NA20762_hap2</BlastOutput_db>
+  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
+  <BlastOutput_query-def>Hsa-Let-7-P1b_5p</BlastOutput_query-def>
+  <BlastOutput_query-len>22</BlastOutput_query-len>
+  <BlastOutput_param>
+    <Parameters>
+      <Parameters_expect>10</Parameters_expect>
+      <Parameters_sc-match>2</Parameters_sc-match>
+      <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
+      <Parameters_gap-open>5</Parameters_gap-open>
+      <Parameters_gap-extend>2</Parameters_gap-extend>
+      <Parameters_filter>L;m;</Parameters_filter>
+    </Parameters>
+  </BlastOutput_param>
+<BlastOutput_iterations>
+<Iteration>
+  <Iteration_iter-num>1</Iteration_iter-num>
+  <Iteration_query-ID>Query_1</Iteration_query-ID>
+  <Iteration_query-def>Hsa-Let-7-P1b_5p</Iteration_query-def>
+  <Iteration_query-len>22</Iteration_query-len>
+<Iteration_hits>
+<Hit>
+  <Hit_num>1</Hit_num>
+  <Hit_id>gb|JBKOQX010000002.1|</Hit_id>
+  <Hit_def>No definition line</Hit_def>
+  <Hit_accession>JBKOQX010000002</Hit_accession>
+  <Hit_len>58989755</Hit_len>
+  <Hit_hsps>
+    <Hsp>
+      <Hsp_num>1</Hsp_num>
+      <Hsp_bit-score>40.9604</Hsp_bit-score>
+      <Hsp_score>44</Hsp_score>
+      <Hsp_evalue>0.00423013</Hsp_evalue>
+      <Hsp_query-from>1</Hsp_query-from>
+      <Hsp_query-to>22</Hsp_query-to>
+      <Hsp_hit-from>52005671</Hsp_hit-from>
+      <Hsp_hit-to>52005692</Hsp_hit-to>
+      <Hsp_query-frame>1</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>22</Hsp_identity>
+      <Hsp_positive>22</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>22</Hsp_align-len>
+      <Hsp_qseq>TGAGGTAGGAGGTTGTATAGTT</Hsp_qseq>
+      <Hsp_hseq>TGAGGTAGGAGGTTGTATAGTT</Hsp_hseq>
+      <Hsp_midline>||||||||||||||||||||||</Hsp_midline>
+    </Hsp>
+  </Hit_hsps>
+</Hit>
+</Iteration_hits>
+  <Iteration_stat>
+    <Statistics>
+      <Statistics_db-num>36</Statistics_db-num>
+      <Statistics_db-len>3016800655</Statistics_db-len>
+      <Statistics_hsp-len>19</Statistics_hsp-len>
+      <Statistics_eff-space>9050399913</Statistics_eff-space>
+      <Statistics_kappa>0.41</Statistics_kappa>
+      <Statistics_lambda>0.625</Statistics_lambda>
+      <Statistics_entropy>0.78</Statistics_entropy>
+    </Statistics>
+  </Iteration_stat>
+</Iteration>
+<Iteration>
+  <Iteration_iter-num>2</Iteration_iter-num>
+  <Iteration_query-ID>Query_2</Iteration_query-ID>
+  <Iteration_query-def>Hsa-Let-7-P1c_5p</Iteration_query-def>
+  <Iteration_query-len>22</Iteration_query-len>
+<Iteration_hits>
+<Hit>
+  <Hit_num>1</Hit_num>
+  <Hit_id>gb|CM102538.1|</Hit_id>
+  <Hit_def>No definition line</Hit_def>
+  <Hit_accession>CM102538</Hit_accession>
+  <Hit_len>42568278</Hit_len>
+  <Hit_hsps>
+    <Hsp>
+      <Hsp_num>1</Hsp_num>
+      <Hsp_bit-score>40.9604</Hsp_bit-score>
+      <Hsp_score>44</Hsp_score>
+      <Hsp_evalue>0.00423013</Hsp_evalue>
+      <Hsp_query-from>1</Hsp_query-from>
+      <Hsp_query-to>22</Hsp_query-to>
+      <Hsp_hit-from>12353802</Hsp_hit-from>
+      <Hsp_hit-to>12353823</Hsp_hit-to>
+      <Hsp_query-frame>1</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>22</Hsp_identity>
+      <Hsp_positive>22</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>22</Hsp_align-len>
+      <Hsp_qseq>TGAGGTAGTAGGTTGTATGGTT</Hsp_qseq>
+      <Hsp_hseq>TGAGGTAGTAGGTTGTATGGTT</Hsp_hseq>
+      <Hsp_midline>||||||||||||||||||||||</Hsp_midline>
+    </Hsp>
+  </Hit_hsps>
+</Hit>
+</Iteration_hits>
+  <Iteration_stat>
+    <Statistics>
+      <Statistics_db-num>36</Statistics_db-num>
+      <Statistics_db-len>3016800655</Statistics_db-len>
+      <Statistics_hsp-len>19</Statistics_hsp-len>
+      <Statistics_eff-space>9050399913</Statistics_eff-space>
+      <Statistics_kappa>0.41</Statistics_kappa>
+      <Statistics_lambda>0.625</Statistics_lambda>
+      <Statistics_entropy>0.78</Statistics_entropy>
+    </Statistics>
+  </Iteration_stat>
+</Iteration>
+</BlastOutput_iterations>
+</BlastOutput>
+