b6aee4c6471cddebd638fec8dbb988c29a69bc22 markd Thu Apr 23 21:58:41 2026 -0700 import of GENCODE V50, MV39, and V50lift37; added a command to do import with a single command diff --git src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift index 4d68b14488a..c292e6646f9 100755 --- src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift +++ src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift @@ -1,23 +1,23 @@ #!/usr/bin/env python3 import sys import os import re from collections import defaultdict myBinDir = os.path.normpath(os.path.dirname(sys.argv[0])) -sys.path.append(os.path.expanduser("/hive/groups/browser/pycbio/lib")) +sys.path.insert(0, os.path.expanduser("/hive/groups/browser/pycbio/lib")) import argparse from pycbio.db import mysqlOps from pycbio.hgdata import hgDb from pycbio.hgdata.chromInfo import ChromInfoTbl mysqlOps.mySqlSetErrorOnWarn() DEBUG = False ucscDbToRefAsm = { "hg19": "GRCh37", "hg38": "GRCh38", "mm10": "GRCm38", "mm39": "GRCm39", }