b6aee4c6471cddebd638fec8dbb988c29a69bc22 markd Thu Apr 23 21:58:41 2026 -0700 import of GENCODE V50, MV39, and V50lift37; added a command to do import with a single command diff --git src/hg/makeDb/outside/gencode/bin/gencodeExonSupportToTable src/hg/makeDb/outside/gencode/bin/gencodeExonSupportToTable index 4047f6f7ac3..7e2fec8d1ae 100755 --- src/hg/makeDb/outside/gencode/bin/gencodeExonSupportToTable +++ src/hg/makeDb/outside/gencode/bin/gencodeExonSupportToTable @@ -1,22 +1,22 @@ #!/usr/bin/env python3 import sys import os myBinDir = os.path.normpath(os.path.dirname(sys.argv[0])) -sys.path.append(os.path.join(myBinDir, "../lib")) -sys.path.append(os.path.expanduser("/hive/groups/browser/pycbio/lib")) +sys.path.insert(0, os.path.join(myBinDir, "../lib")) +sys.path.insert(0, os.path.expanduser("/hive/groups/browser/pycbio/lib")) import argparse from pycbio.sys import fileOps import pipettor from gencode.gencodeProcess import GencodeLiftOver, getEditIdCmd def parseArgs(): desc = """Convert GENCODE exon support to a table. This deals with exon coordinates mappings. The chains can be generated with buildGencodeToUcscLift """ parser = argparse.ArgumentParser(description=desc) parser.add_argument("--verbose", dest="verbose", action="store_true", default=False, help="verbose output for debugging") parser.add_argument("exonSupportIn",