b6aee4c6471cddebd638fec8dbb988c29a69bc22 markd Thu Apr 23 21:58:41 2026 -0700 import of GENCODE V50, MV39, and V50lift37; added a command to do import with a single command diff --git src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs index 494448b06f9..f054fae2b86 100755 --- src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs +++ src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs @@ -1,22 +1,22 @@ #!/usr/bin/env python3 import sys import os myBinDir = os.path.normpath(os.path.dirname(sys.argv[0])) -sys.path.append(os.path.join(myBinDir, "../lib")) -sys.path.append(os.path.expanduser("/hive/groups/browser/pycbio/lib")) +sys.path.insert(0, os.path.join(myBinDir, "../lib")) +sys.path.insert(0, os.path.expanduser("/hive/groups/browser/pycbio/lib")) import argparse from pycbio.sys import fileOps from gencode.gencodeGenes import GencodeGenes def parseArgs(): desc = """%prog [options] gencodeGp gencodeAttrs gencodeAttrsTbl gencodeTagTbl gencodeTslTbl Output the gencode attributes table, adding computed columns to attributes file. Output matches: kent/src/hg/lib/encode/wgEncodeGencodeAttrs.as and is sorted by locus to optimize track display speed. Also outputs a tags in the format: