b6aee4c6471cddebd638fec8dbb988c29a69bc22 markd Thu Apr 23 21:58:41 2026 -0700 import of GENCODE V50, MV39, and V50lift37; added a command to do import with a single command diff --git src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks index 1b69571cceb..4c464ba8a52 100755 --- src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks +++ src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks @@ -1,22 +1,22 @@ #!/usr/bin/env python3 import sys import os myBinDir = os.path.normpath(os.path.dirname(sys.argv[0])) -sys.path.append(os.path.join(myBinDir, "../lib")) -sys.path.append(os.path.expanduser("/hive/groups/browser/pycbio/lib")) +sys.path.insert(0, os.path.join(myBinDir, "../lib")) +sys.path.insert(0, os.path.expanduser("/hive/groups/browser/pycbio/lib")) import argparse from pycbio.sys.symEnum import SymEnum from gencode.gencodeGenes import GencodeGenes, GencodeFunction, GencodeTag GencodeSubset = SymEnum("GencodeSubset", ("pseudogene", "basic", "comp")) def parseArgs(): desc = """%prog [options] gencodeSubset gencodeGp gencodeAttrs outGp Extracts genePred records for a track based on various criteria and sort results. """ parser = argparse.ArgumentParser(description=desc) parser.add_argument("gencodeSubset", type=GencodeSubset, choices=GencodeSubset,