abc896118b1b7aaf66ff3ade939f34edf49ac97a markd Thu Apr 23 13:56:57 2026 -0700 switch gencode all,joiner to use macros instead of growing every release #37436 diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner index b65695ec96d..fd9bc7d642c 100644 --- src/hg/makeDb/schema/all.joiner +++ src/hg/makeDb/schema/all.joiner @@ -788,8444 +788,512 @@ identifier wgEncodeGencodeClassesRel2 "Link together Gencode gene model (Known) and class for Jan 2009 Data Version" hg18.wgEncodeGencodeClassesRel2.name hg18.wgEncodeGencodeAutoRel2.name unique hg18.wgEncodeGencodeManualRel2.name unique hg18.wgEncodeGencodePolyaRel2.name unique identifier wgEncodeGencodeClassesV3 "Link together Gencode gene model (Known) and class for July 2009 Data Version" hg18.wgEncodeGencodeClassesV3.name hg18.wgEncodeGencodeAutoV3.name unique hg18.wgEncodeGencodeManualV3.name unique hg18.wgEncodeGencodePolyaV3.name unique -# begin Gencode V7 - -# = gencode genepreds with joining through wgEncodeGencodeAttrsV7 -# wgEncodeGencodeBasicV7 -# wgEncodeGencodeCompV7 -# wgEncodeGencodePseudoGeneV7 - -# = gencode genepreds with no associations -# wgEncodeGencodePolyaV7 -# wgEncodeGencode2wayConsPseudoV7 - -# gencode association tables (joined through wgEncodeGencodeAttrsV7) -#wgEncodeGencodeAttrsV7 -#wgEncodeGencodeExonSupportV7 -#wgEncodeGencodeGeneSourceV7 -#wgEncodeGencodePdbV7 -#wgEncodeGencodePubMedV7 -#wgEncodeGencodeRefSeqV7 -#wgEncodeGencodeTagV7 -#wgEncodeGencodeTranscriptSourceV7 -#wgEncodeGencodeTranscriptSupportV7 -#wgEncodeGencodeUniProtV7 - -identifier wgEncodeGencodeBasicAttrsV7 -"Link together Gencode Basic Table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeAttrsV7.transcriptId - hg19.wgEncodeGencodeBasicV7.name - -identifier wgEncodeGencodeCompAttrsV7 -"Link together Gencode Comprehensive Table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeAttrsV7.transcriptId - hg19.wgEncodeGencodeCompV7.name - -identifier wgEncodeGencodePseudoGeneAttrsV7 -"Link together Gencode PseudoGene Table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeAttrsV7.transcriptId - hg19.wgEncodeGencodePseudoGeneV7.name - -identifier wgEncodeGencodeExonSupportV7 -"Link together Gencode Exon Support table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeExonSupportV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV7 -"Link together Gencode Gene Source table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeGeneSourceV7.geneId - hg19.wgEncodeGencodeAttrsV7.geneId - -identifier wgEncodeGencodePdbV7 -"Link together Gencode Pdb table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodePdbV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.0397575 - -identifier wgEncodeGencodePubMedV7 -"Link together Gencode Pubmed table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodePubMedV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV7 -"Link together Gencode RefSeq table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeRefSeqV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.185827 - -identifier wgEncodeGencodeTagV7 -"Link together Gencode Tag table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeTagV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV7 -"Link together Gencode Transcript Source table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeTranscriptSourceV7.transcriptId - hg19.wgEncodeGencodeAttrsV7.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV7 -"Link together Gencode Transcript Support table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeTranscriptSupportV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.333503 - -identifier wgEncodeGencodeUniProtV7 -"Link together Gencode UniProt Support table with Attributes table for May 2011 Data Version" - hg19.wgEncodeGencodeUniProtV7.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV7.transcriptId minCheck=0.358209 - -# end Gencode V7 - -# begin Gencode V10 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV10 -# wgEncodeGencode2wayConsPseudoV10 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV10 -identifier wgEncodeGencodeBasicAttrsV10 +## +# GENCODE macro-driven definitions (recent releases) +# To add a new release: append the version token to the set lines below. +# Older releases (pre-V44, pre-VM35) remain literal above because their +# minCheck values were tuned per-release and would need individual stanzas. +# The macro uses the loosest (V49/VM38) minCheck values, which is safe +# because earlier releases in the set already passed tighter thresholds. +## + +set gencodeHg38Vers V20,V21,V22,V23,V24,V25,V26,V27,V28,V29,V30,V31,V32,V33,V34,V35,V36,V37,V38,V39,V40,V41,V42,V43,V44,V45,V46,V47,V48,V49 +set gencodeHg38GeneSymbolVers V29,V30,V31,V32,V33,V34,V35,V36,V37,V38,V39,V40,V41,V42,V43,V44,V45,V46,V47,V48,V49 +set gencodeHg38EntrezGeneVers V22,V23,V24,V25,V26,V27,V28,V29,V30,V31,V32,V33,V34,V35,V36,V37,V38,V39,V40,V41,V42,V43,V44,V45,V46,V47,V48,V49 + +set gencodeHg19LiftVers V24lift37,V26lift37,V27lift37,V28lift37,V29lift37,V30lift37,V31lift37,V32lift37,V33lift37,V34lift37,V35lift37,V36lift37,V37lift37,V38lift37,V39lift37,V40lift37,V41lift37,V42lift37,V43lift37,V44lift37,V45lift37,V46lift37,V47lift37,V48lift37,V49lift37 +set gencodeHg19LiftGeneSymbolVers V29lift37,V30lift37,V31lift37,V32lift37,V33lift37,V34lift37,V35lift37,V36lift37,V37lift37,V38lift37,V39lift37,V40lift37,V41lift37,V42lift37,V43lift37,V44lift37,V45lift37,V46lift37,V47lift37,V48lift37,V49lift37 +set gencodeHg19LiftEntrezGeneVers V24lift37,V28lift37,V29lift37,V30lift37,V31lift37,V32lift37,V33lift37,V34lift37,V35lift37,V36lift37,V37lift37,V38lift37,V39lift37,V40lift37,V41lift37,V42lift37,V43lift37,V44lift37,V45lift37,V46lift37,V47lift37,V48lift37,V49lift37 +set gencodeHg19LiftEntrezGeneLowVers V26lift37,V27lift37 + +set gencodeMm39Vers VM26,VM27,VM28,VM29,VM30,VM31,VM32,VM33,VM34,VM35,VM36,VM37,VM38 + +set gencodeHg38RefSeqToRefGeneLowVers V23,V24,V25,V26,V27,V28,V29 +set gencodeHg38RefSeqToRefGeneVers V30,V31,V32,V33,V34,V35,V36,V37,V38,V39,V40,V41,V42,V43,V44,V45,V46,V47,V48,V49 +set gencodeHg19LiftRefSeqToRefGeneLowVers V24lift37,V26lift37,V27lift37,V28lift37,V29lift37 +set gencodeHg19LiftRefSeqToRefGeneVers V30lift37,V31lift37,V32lift37,V33lift37,V34lift37,V35lift37,V36lift37,V37lift37,V38lift37,V39lift37,V40lift37,V41lift37,V42lift37,V43lift37,V44lift37,V45lift37,V46lift37,V47lift37,V48lift37,V49lift37 +set gencodeMm39RefSeqToRefGeneVers VM26,VM27,VM28,VM29,VM30,VM31,VM32,VM33,VM34,VM35,VM36,VM37,VM38 + +## +# hg38 +## + +identifier wgEncodeGencodeBasicAttrs[${gencodeHg38Vers}] "Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV10.transcriptId - hg19.wgEncodeGencodeBasicV10.name + hg38.wgEncodeGencodeAttrs[].transcriptId + hg38.wgEncodeGencodeBasic[].name -identifier wgEncodeGencodeCompAttrsV10 +identifier wgEncodeGencodeCompAttrs[${gencodeHg38Vers}] "Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV10.transcriptId - hg19.wgEncodeGencodeCompV10.name + hg38.wgEncodeGencodeAttrs[].transcriptId + hg38.wgEncodeGencodeComp[].name -identifier wgEncodeGencodePseudoGeneAttrsV10 +identifier wgEncodeGencodePseudoGeneAttrs[${gencodeHg38Vers}] "Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV10.transcriptId - hg19.wgEncodeGencodePseudoGeneV10.name + hg38.wgEncodeGencodeAttrs[].transcriptId + hg38.wgEncodeGencodePseudoGene[].name -# gencode association tables (joined through wgEncodeGencodeAttrsV10) -identifier wgEncodeGencodeExonSupportV10 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV10 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV10.geneId - hg19.wgEncodeGencodeAttrsV10.geneId - -identifier wgEncodeGencodePdbV10 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV10 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV10 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.185827 - -identifier wgEncodeGencodeTagV10 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV10 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV10.transcriptId - hg19.wgEncodeGencodeAttrsV10.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV10 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeTranscriptionSupportLevelV10 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV10 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV10 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV10.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV10.transcriptId minCheck=0.10 - -# end Gencode V10 - -# begin Gencode V11 - -# gencode genepreds with no associations -# wgencodegencodepolyav11 -# wgEncodeGencode2wayConsPseudoV11 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV11 -identifier wgEncodeGencodeBasicAttrsV11 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV11.transcriptId - hg19.wgEncodeGencodeBasicV11.name - -identifier wgEncodeGencodeCompAttrsV11 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV11.transcriptId - hg19.wgEncodeGencodeCompV11.name - -identifier wgEncodeGencodePseudoGeneAttrsV11 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV11.transcriptId - hg19.wgEncodeGencodePseudoGeneV11.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV11) -identifier wgEncodeGencodeExonSupportV11 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV11 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV11.geneId - hg19.wgEncodeGencodeAttrsV11.geneId - -identifier wgEncodeGencodePdbV11 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV11 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV11 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.185827 - -identifier wgEncodeGencodeTagV11 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV11 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV11.transcriptId - hg19.wgEncodeGencodeAttrsV11.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV11 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.29 - -identifier wgEncodeGencodeTranscriptionSupportLevelV11 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV11 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV11 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV11.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV11.transcriptId minCheck=0.10 - -# end Gencode V11 - -# begin Gencode V12 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV12 -# wgEncodeGencode2wayConsPseudoV12 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV12 -identifier wgEncodeGencodeBasicAttrsV12 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV12.transcriptId - hg19.wgEncodeGencodeBasicV12.name - -identifier wgEncodeGencodeCompAttrsV12 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV12.transcriptId - hg19.wgEncodeGencodeCompV12.name - -identifier wgEncodeGencodePseudoGeneAttrsV12 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV12.transcriptId - hg19.wgEncodeGencodePseudoGeneV12.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV12) -identifier wgEncodeGencodeExonSupportV12 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV12 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV12.geneId - hg19.wgEncodeGencodeAttrsV12.geneId - -identifier wgEncodeGencodePdbV12 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV12 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV12 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.185827 - -identifier wgEncodeGencodeTagV12 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV12 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV12.transcriptId - hg19.wgEncodeGencodeAttrsV12.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV12 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.29 - -identifier wgEncodeGencodeTranscriptionSupportLevelV12 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV12 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV12 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV12.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV12.transcriptId minCheck=0.10 - -# end Gencode V12 - -# begin Gencode V14 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV14 -# wgEncodeGencode2wayConsPseudoV14 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV14 -identifier wgEncodeGencodeBasicAttrsV14 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV14.transcriptId - hg19.wgEncodeGencodeBasicV14.name - -identifier wgEncodeGencodeCompAttrsV14 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV14.transcriptId - hg19.wgEncodeGencodeCompV14.name - -identifier wgEncodeGencodePseudoGeneAttrsV14 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV14.transcriptId - hg19.wgEncodeGencodePseudoGeneV14.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV14) -identifier wgEncodeGencodeExonSupportV14 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV14 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV14.geneId - hg19.wgEncodeGencodeAttrsV14.geneId - -identifier wgEncodeGencodePdbV14 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV14 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV14 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.18 - -identifier wgEncodeGencodeTagV14 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV14 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV14.transcriptId - hg19.wgEncodeGencodeAttrsV14.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV14 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelV14 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV14 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV14 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV14.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV14.transcriptId minCheck=0.10 - -# end Gencode V14 - -# begin Gencode V16 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV16 -# wgEncodeGencode2wayConsPseudoV16 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV16 -identifier wgEncodeGencodeBasicAttrsV16 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV16.transcriptId - hg19.wgEncodeGencodeBasicV16.name - -identifier wgEncodeGencodeCompAttrsV16 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV16.transcriptId - hg19.wgEncodeGencodeCompV16.name - -identifier wgEncodeGencodePseudoGeneAttrsV16 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV16.transcriptId - hg19.wgEncodeGencodePseudoGeneV16.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV16) -identifier wgEncodeGencodeExonSupportV16 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV16 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV16.geneId - hg19.wgEncodeGencodeAttrsV16.geneId - -identifier wgEncodeGencodePdbV16 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV16 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV16 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV16 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV16 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV16.transcriptId - hg19.wgEncodeGencodeAttrsV16.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV16 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelV16 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV16 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV16 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV16.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV16.transcriptId minCheck=0.10 - -# end Gencode V16 - -# begin Gencode V17 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV17 -# wgEncodeGencode2wayConsPseudoV17 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV17 -identifier wgEncodeGencodeBasicAttrsV17 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV17.transcriptId - hg19.wgEncodeGencodeBasicV17.name - -identifier wgEncodeGencodeCompAttrsV17 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV17.transcriptId - hg19.wgEncodeGencodeCompV17.name - -identifier wgEncodeGencodePseudoGeneAttrsV17 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV17.transcriptId - hg19.wgEncodeGencodePseudoGeneV17.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV17) -identifier wgEncodeGencodeExonSupportV17 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV17 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV17.geneId - hg19.wgEncodeGencodeAttrsV17.geneId - -identifier wgEncodeGencodePdbV17 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV17 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV17 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV17 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV17 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV17.transcriptId - hg19.wgEncodeGencodeAttrsV17.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV17 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelV17 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV17 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV17 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV17.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV17.transcriptId minCheck=0.10 - -# end Gencode V17 - -# begin Gencode V19 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV19 -# wgEncodeGencode2wayConsPseudoV19 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV19 -identifier wgEncodeGencodeBasicAttrsV19 -"Link together Gencode Basic Table with Attributes table" - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId - hg19,hg38.wgEncodeGencodeBasicV19.name - -identifier wgEncodeGencodeCompAttrsV19 -"Link together Gencode Comprehensive Table with Attributes table" - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId - hg19,hg38.wgEncodeGencodeCompV19.name - -identifier wgEncodeGencodePseudoGeneAttrsV19 -"Link together Gencode PseudoGene Table with Attributes table" - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId - hg19,hg38.wgEncodeGencodePseudoGeneV19.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV19) -identifier wgEncodeGencodeExonSupportV19 -"Link together Gencode Exon Support table with Attributes table" - hg19,hg38.wgEncodeGencodeExonSupportV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceV19 -"Link together Gencode Gene Source table with Attributes table" - hg19,hg38.wgEncodeGencodeGeneSourceV19.geneId - hg19,hg38.wgEncodeGencodeAttrsV19.geneId - -identifier wgEncodeGencodePdbV19 -"Link together Gencode Pdb table with Attributes table" - hg19,hg38.wgEncodeGencodePdbV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV19 -"Link together Gencode Pubmed table with Attributes table" - hg19,hg38.wgEncodeGencodePubMedV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV19 -"Link together Gencode RefSeq table with Attributes table" - hg19,hg38.wgEncodeGencodeRefSeqV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV19 -"Link together Gencode Tag table with Attributes table" - hg19,hg38.wgEncodeGencodeTagV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV19.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV19 -"Link together Gencode Transcript Source table with Attributes table" - hg19,hg38.wgEncodeGencodeTranscriptSourceV19.transcriptId - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV19 -"Link together Gencode Transcript Support table with Attributes table" - hg19,hg38.wgEncodeGencodeTranscriptSupportV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelV19 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19,hg38.wgEncodeGencodeTranscriptionSupportLevelV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV19 -"Link together Gencode UniProt Support table with Attributes table" - hg19,hg38.wgEncodeGencodeUniProtV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV19 -"Link together Gencode Annotation Remark table with Attributes table" - hg19,hg38.wgEncodeGencodeAnnotationRemarkV19.transcriptId dupeOk - hg19,hg38.wgEncodeGencodeAttrsV19.transcriptId minCheck=0.10 - -# end Gencode V19 - -# begin Gencode V20 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV20 -# wgEncodeGencode2wayConsPseudoV20 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV20 -identifier wgEncodeGencodeBasicAttrsV20 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV20.transcriptId - hg38.wgEncodeGencodeBasicV20.name - -identifier wgEncodeGencodeCompAttrsV20 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV20.transcriptId - hg38.wgEncodeGencodeCompV20.name - -identifier wgEncodeGencodePseudoGeneAttrsV20 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV20.transcriptId - hg38.wgEncodeGencodePseudoGeneV20.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV20) -identifier wgEncodeGencodeExonSupportV20 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.98 - -identifier wgEncodeGencodeGeneSourceV20 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV20.geneId - hg38.wgEncodeGencodeAttrsV20.geneId - -identifier wgEncodeGencodePdbV20 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV20 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV20 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV20 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV20 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV20.transcriptId - hg38.wgEncodeGencodeAttrsV20.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV20 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.81 - -identifier wgEncodeGencodeTranscriptionSupportLevelV20 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV20 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV20 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV20.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV20.transcriptId minCheck=0.10 - -# end Gencode V20 - -# begin Gencode V21 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV21 -# wgEncodeGencode2wayConsPseudoV21 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV21 -identifier wgEncodeGencodeBasicAttrsV21 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV21.transcriptId - hg38.wgEncodeGencodeBasicV21.name - -identifier wgEncodeGencodeCompAttrsV21 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV21.transcriptId - hg38.wgEncodeGencodeCompV21.name - -identifier wgEncodeGencodePseudoGeneAttrsV21 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV21.transcriptId - hg38.wgEncodeGencodePseudoGeneV21.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV21) -identifier wgEncodeGencodeExonSupportV21 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.98 - -identifier wgEncodeGencodeGeneSourceV21 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV21.geneId - hg38.wgEncodeGencodeAttrsV21.geneId - -identifier wgEncodeGencodePdbV21 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV21 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqV21 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV21 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV21 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV21.transcriptId - hg38.wgEncodeGencodeAttrsV21.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV21 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.81 - -identifier wgEncodeGencodeTranscriptionSupportLevelV21 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV21 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV21 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV21.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV21.transcriptId minCheck=0.10 - -# end Gencode V21 - -# begin Gencode V22 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV22 -# wgEncodeGencode2wayConsPseudoV22 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV22 -identifier wgEncodeGencodeBasicAttrsV22 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV22.transcriptId - hg38.wgEncodeGencodeBasicV22.name - -identifier wgEncodeGencodeCompAttrsV22 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV22.transcriptId - hg38.wgEncodeGencodeCompV22.name - -identifier wgEncodeGencodePseudoGeneAttrsV22 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV22.transcriptId - hg38.wgEncodeGencodePseudoGeneV22.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV22) -identifier wgEncodeGencodeExonSupportV22 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceV22 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV22.geneId - hg38.wgEncodeGencodeAttrsV22.geneId - -identifier wgEncodeGencodePdbV22 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV22 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV22 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagV22 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceV22 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV22.transcriptId - hg38.wgEncodeGencodeAttrsV22.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV22 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.22 - -identifier wgEncodeGencodeTranscriptionSupportLevelV22 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV22 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV22 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV22.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV22.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV22 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV22.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV22.transcriptId minCheck=0.358209 - -# end Gencode V22 - -# begin Gencode V23 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV23 -# wgEncodeGencode2wayConsPseudoV23 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV23 -identifier wgEncodeGencodeBasicAttrsV23 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV23.transcriptId - hg38.wgEncodeGencodeBasicV23.name - -identifier wgEncodeGencodeCompAttrsV23 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV23.transcriptId - hg38.wgEncodeGencodeCompV23.name - -identifier wgEncodeGencodePseudoGeneAttrsV23 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV23.transcriptId - hg38.wgEncodeGencodePseudoGeneV23.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV23) -identifier wgEncodeGencodeExonSupportV23 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceV23 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV23.geneId - hg38.wgEncodeGencodeAttrsV23.geneId - -identifier wgEncodeGencodePdbV23 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV23 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV23 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV23 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV23.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.8 - -identifier wgEncodeGencodeTagV23 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV23.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV23 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV23.transcriptId - hg38.wgEncodeGencodeAttrsV23.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV23 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.2297 - -identifier wgEncodeGencodeTranscriptionSupportLevelV23 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV23 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV23 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV23.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV23.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV23 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV23.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV23.transcriptId minCheck=0.358209 - -# end Gencode V23 - -# begin Gencode V24 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV24 -# wgEncodeGencode2wayConsPseudoV24 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV24 -identifier wgEncodeGencodeBasicAttrsV24 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV24.transcriptId - hg38.wgEncodeGencodeBasicV24.name - -identifier wgEncodeGencodeCompAttrsV24 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV24.transcriptId - hg38.wgEncodeGencodeCompV24.name - -identifier wgEncodeGencodePseudoGeneAttrsV24 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV24.transcriptId - hg38.wgEncodeGencodePseudoGeneV24.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV24) -identifier wgEncodeGencodeExonSupportV24 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceV24 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV24.geneId - hg38.wgEncodeGencodeAttrsV24.geneId - -identifier wgEncodeGencodePdbV24 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV24 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV24 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV24 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV24.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV24 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV24.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV24 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV24.transcriptId - hg38.wgEncodeGencodeAttrsV24.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV24 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.2285 - -identifier wgEncodeGencodeTranscriptionSupportLevelV24 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV24 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV24 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV24.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV24.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV24 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV24.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV24.transcriptId minCheck=0.358209 - -# end Gencode V24 - -# begin Gencode V25 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV25 -# wgEncodeGencode2wayConsPseudoV25 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV25 -identifier wgEncodeGencodeBasicAttrsV25 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV25.transcriptId - hg38.wgEncodeGencodeBasicV25.name - -identifier wgEncodeGencodeCompAttrsV25 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV25.transcriptId - hg38.wgEncodeGencodeCompV25.name - -identifier wgEncodeGencodePseudoGeneAttrsV25 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV25.transcriptId - hg38.wgEncodeGencodePseudoGeneV25.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV25) -identifier wgEncodeGencodeExonSupportV25 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.95 - -identifier wgEncodeGencodeGeneSourceV25 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV25.geneId - hg38.wgEncodeGencodeAttrsV25.geneId - -identifier wgEncodeGencodePdbV25 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV25 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV25 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV25 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV25.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV25 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV25.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV25 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV25.transcriptId - hg38.wgEncodeGencodeAttrsV25.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV25 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV25 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV25 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV25 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV25.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV25.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV25 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV25.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV25.transcriptId minCheck=0.358209 - -# end Gencode V25 - -# begin Gencode V26 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV26 -# wgEncodeGencode2wayConsPseudoV26 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV26 -identifier wgEncodeGencodeBasicAttrsV26 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV26.transcriptId - hg38.wgEncodeGencodeBasicV26.name - -identifier wgEncodeGencodeCompAttrsV26 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV26.transcriptId - hg38.wgEncodeGencodeCompV26.name - -identifier wgEncodeGencodePseudoGeneAttrsV26 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV26.transcriptId - hg38.wgEncodeGencodePseudoGeneV26.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV26) -identifier wgEncodeGencodeExonSupportV26 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.95 - -identifier wgEncodeGencodeGeneSourceV26 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV26.geneId - hg38.wgEncodeGencodeAttrsV26.geneId - -identifier wgEncodeGencodePdbV26 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV26 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV26 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV26 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV26.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV26 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV26.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV26 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV26.transcriptId - hg38.wgEncodeGencodeAttrsV26.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV26 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV26 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV26 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV26 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV26.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV26.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV26 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV26.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV26.transcriptId minCheck=0.358209 - -# end Gencode V26 - -# begin Gencode V27 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV27 -# wgEncodeGencode2wayConsPseudoV27 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV27 -identifier wgEncodeGencodeBasicAttrsV27 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV27.transcriptId - hg38.wgEncodeGencodeBasicV27.name - -identifier wgEncodeGencodeCompAttrsV27 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV27.transcriptId - hg38.wgEncodeGencodeCompV27.name - -identifier wgEncodeGencodePseudoGeneAttrsV27 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV27.transcriptId - hg38.wgEncodeGencodePseudoGeneV27.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV27) -identifier wgEncodeGencodeExonSupportV27 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.95 - -identifier wgEncodeGencodeGeneSourceV27 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV27.geneId - hg38.wgEncodeGencodeAttrsV27.geneId - -identifier wgEncodeGencodePdbV27 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV27 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV27 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV27 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV27.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV27 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV27.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV27 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV27.transcriptId - hg38.wgEncodeGencodeAttrsV27.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV27 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV27 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV27 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV27 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV27.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV27.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV27 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV27.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV27.transcriptId minCheck=0.358209 - -# end Gencode V27 - -# begin Gencode V28 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV28 -# wgEncodeGencode2wayConsPseudoV28 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV28 -identifier wgEncodeGencodeBasicAttrsV28 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV28.transcriptId - hg38.wgEncodeGencodeBasicV28.name - -identifier wgEncodeGencodeCompAttrsV28 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV28.transcriptId - hg38.wgEncodeGencodeCompV28.name - -identifier wgEncodeGencodePseudoGeneAttrsV28 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV28.transcriptId - hg38.wgEncodeGencodePseudoGeneV28.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV28) -identifier wgEncodeGencodeGeneSourceV28 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV28.geneId - hg38.wgEncodeGencodeAttrsV28.geneId - -identifier wgEncodeGencodePdbV28 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV28 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV28 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV28 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV28.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV28 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV28.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV28 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV28.transcriptId - hg38.wgEncodeGencodeAttrsV28.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV28 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV28 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV28 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV28 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV28 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV28.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV28.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportV28 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV28.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV28.transcriptId minCheck=0.95 - -# end Gencode V28 - -# begin Gencode V29 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV29 -# wgEncodeGencode2wayConsPseudoV29 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV29 -identifier wgEncodeGencodeBasicAttrsV29 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV29.transcriptId - hg38.wgEncodeGencodeBasicV29.name - -identifier wgEncodeGencodeCompAttrsV29 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV29.transcriptId - hg38.wgEncodeGencodeCompV29.name - -identifier wgEncodeGencodePseudoGeneAttrsV29 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV29.transcriptId - hg38.wgEncodeGencodePseudoGeneV29.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV29) -identifier wgEncodeGencodeGeneSourceV29 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV29.geneId - hg38.wgEncodeGencodeAttrsV29.geneId - -identifier wgEncodeGencodeGeneSymbolV29 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV29 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV29 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV29 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV29 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV29.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV29 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV29.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV29 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV29.transcriptId - hg38.wgEncodeGencodeAttrsV29.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV29 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV29 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV29 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV29 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV29 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV29.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV29.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportV29 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV29.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV29.transcriptId minCheck=0.95 - -# end Gencode V29 - -# begin Gencode V30 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV30 -# wgEncodeGencode2wayConsPseudoV30 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV30 -identifier wgEncodeGencodeBasicAttrsV30 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV30.transcriptId - hg38.wgEncodeGencodeBasicV30.name - -identifier wgEncodeGencodeCompAttrsV30 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV30.transcriptId - hg38.wgEncodeGencodeCompV30.name - -identifier wgEncodeGencodePseudoGeneAttrsV30 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV30.transcriptId - hg38.wgEncodeGencodePseudoGeneV30.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV30) -identifier wgEncodeGencodeGeneSourceV30 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV30.geneId - hg38.wgEncodeGencodeAttrsV30.geneId - -identifier wgEncodeGencodeGeneSymbolV30 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV30 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV30 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV30 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV30 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV30.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV30 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV30.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV30 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV30.transcriptId - hg38.wgEncodeGencodeAttrsV30.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV30 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV30 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV30 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV30 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV30 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV30.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV30.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportV30 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV30.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV30.transcriptId minCheck=0.95 - -# end Gencode V30 - -# begin Gencode V31 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV31 -# wgEncodeGencode2wayConsPseudoV31 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV31 -identifier wgEncodeGencodeBasicAttrsV31 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV31.transcriptId - hg38.wgEncodeGencodeBasicV31.name - -identifier wgEncodeGencodeCompAttrsV31 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV31.transcriptId - hg38.wgEncodeGencodeCompV31.name - -identifier wgEncodeGencodePseudoGeneAttrsV31 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV31.transcriptId - hg38.wgEncodeGencodePseudoGeneV31.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV31) -identifier wgEncodeGencodeGeneSourceV31 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV31.geneId - hg38.wgEncodeGencodeAttrsV31.geneId - -identifier wgEncodeGencodeGeneSymbolV31 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV31 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV31 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV31 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV31 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV31.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV31 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.373378 - hg38.wgEncodeGencodeRefSeqV31.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV31 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV31.transcriptId - hg38.wgEncodeGencodeAttrsV31.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV31 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV31 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV31 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV31 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV31 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV31.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV31.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportV31 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV31.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV31.transcriptId minCheck=0.90 - -# end Gencode V31 - -# begin Gencode V32 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV32 -# wgEncodeGencode2wayConsPseudoV32 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV32 -identifier wgEncodeGencodeBasicAttrsV32 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV32.transcriptId - hg38.wgEncodeGencodeBasicV32.name - -identifier wgEncodeGencodeCompAttrsV32 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV32.transcriptId - hg38.wgEncodeGencodeCompV32.name - -identifier wgEncodeGencodePseudoGeneAttrsV32 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV32.transcriptId - hg38.wgEncodeGencodePseudoGeneV32.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV32) -identifier wgEncodeGencodeGeneSourceV32 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV32.geneId - hg38.wgEncodeGencodeAttrsV32.geneId - -identifier wgEncodeGencodeGeneSymbolV32 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV32 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV32 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV32 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV32 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV32.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV32 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV32.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV32 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV32.transcriptId - hg38.wgEncodeGencodeAttrsV32.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV32 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV32 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV32 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV32 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV32 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV32.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV32.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV32 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV32.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV32.transcriptId minCheck=0.90 - -# end Gencode V32 - -# begin Gencode V33 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV33 -# wgEncodeGencode2wayConsPseudoV33 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV33 -identifier wgEncodeGencodeBasicAttrsV33 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV33.transcriptId - hg38.wgEncodeGencodeBasicV33.name - -identifier wgEncodeGencodeCompAttrsV33 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV33.transcriptId - hg38.wgEncodeGencodeCompV33.name - -identifier wgEncodeGencodePseudoGeneAttrsV33 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV33.transcriptId - hg38.wgEncodeGencodePseudoGeneV33.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV33) -identifier wgEncodeGencodeGeneSourceV33 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV33.geneId - hg38.wgEncodeGencodeAttrsV33.geneId - -identifier wgEncodeGencodeGeneSymbolV33 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV33 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV33 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV33 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV33 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV33.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV33 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV33.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV33 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV33.transcriptId - hg38.wgEncodeGencodeAttrsV33.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV33 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV33 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV33 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV33 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV33 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV33.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV33.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV33 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV33.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV33.transcriptId minCheck=0.90 - -# end Gencode V33 - -# begin Gencode V34 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV34 -# wgEncodeGencode2wayConsPseudoV34 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV34 -identifier wgEncodeGencodeBasicAttrsV34 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV34.transcriptId - hg38.wgEncodeGencodeBasicV34.name - -identifier wgEncodeGencodeCompAttrsV34 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV34.transcriptId - hg38.wgEncodeGencodeCompV34.name - -identifier wgEncodeGencodePseudoGeneAttrsV34 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV34.transcriptId - hg38.wgEncodeGencodePseudoGeneV34.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV34) -identifier wgEncodeGencodeGeneSourceV34 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV34.geneId - hg38.wgEncodeGencodeAttrsV34.geneId - -identifier wgEncodeGencodeGeneSymbolV34 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV34 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV34 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV34 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV34 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV34.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV34 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV34.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV34 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV34.transcriptId - hg38.wgEncodeGencodeAttrsV34.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV34 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV34 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV34 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV34 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV34 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV34.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV34.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV34 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV34.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV34.transcriptId minCheck=0.90 - -# end Gencode V34 - -# begin Gencode V35 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV35 -# wgEncodeGencode2wayConsPseudoV35 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV35 -identifier wgEncodeGencodeBasicAttrsV35 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV35.transcriptId - hg38.wgEncodeGencodeBasicV35.name - -identifier wgEncodeGencodeCompAttrsV35 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV35.transcriptId - hg38.wgEncodeGencodeCompV35.name - -identifier wgEncodeGencodePseudoGeneAttrsV35 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV35.transcriptId - hg38.wgEncodeGencodePseudoGeneV35.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV35) -identifier wgEncodeGencodeGeneSourceV35 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV35.geneId - hg38.wgEncodeGencodeAttrsV35.geneId - -identifier wgEncodeGencodeGeneSymbolV35 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV35 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV35 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV35 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV35 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV35.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV35 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV35.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV35 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV35.transcriptId - hg38.wgEncodeGencodeAttrsV35.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV35 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV35 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV35 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV35 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV35 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV35.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV35.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV35 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV35.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.90 - -# end Gencode V35 - -# begin Gencode V36 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV36 -# wgEncodeGencode2wayConsPseudoV36 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV36 -identifier wgEncodeGencodeBasicAttrsV36 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV36.transcriptId - hg38.wgEncodeGencodeBasicV36.name - -identifier wgEncodeGencodeCompAttrsV36 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV36.transcriptId - hg38.wgEncodeGencodeCompV36.name - -identifier wgEncodeGencodePseudoGeneAttrsV36 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV36.transcriptId - hg38.wgEncodeGencodePseudoGeneV36.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV36) -identifier wgEncodeGencodeGeneSourceV36 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV36.geneId - hg38.wgEncodeGencodeAttrsV36.geneId - -identifier wgEncodeGencodeGeneSymbolV36 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV36 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV36 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV36 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV36 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV36.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV36 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV36.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV36 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV36.transcriptId - hg38.wgEncodeGencodeAttrsV36.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV36 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.08 - -identifier wgEncodeGencodeTranscriptionSupportLevelV36 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV36 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV36 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV36 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV36.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV36.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV36 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV36.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.80 - -# end Gencode V36 - -# begin Gencode V37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV37 -# wgEncodeGencode2wayConsPseudoV37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV37 -identifier wgEncodeGencodeBasicAttrsV37 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV37.transcriptId - hg38.wgEncodeGencodeBasicV37.name - -identifier wgEncodeGencodeCompAttrsV37 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV37.transcriptId - hg38.wgEncodeGencodeCompV37.name - -identifier wgEncodeGencodePseudoGeneAttrsV37 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV37.transcriptId - hg38.wgEncodeGencodePseudoGeneV37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV37) -identifier wgEncodeGencodeGeneSourceV37 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV37.geneId - hg38.wgEncodeGencodeAttrsV37.geneId - -identifier wgEncodeGencodeGeneSymbolV37 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV37 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV37 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV37 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV37 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV37.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV37 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.36 - hg38.wgEncodeGencodeRefSeqV37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV37 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV37.transcriptId - hg38.wgEncodeGencodeAttrsV37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV37 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.08 - -identifier wgEncodeGencodeTranscriptionSupportLevelV37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV37 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV37 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV37 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV37.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV37 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV37.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV37.transcriptId minCheck=0.80 - -# end Gencode V37 - -# begin Gencode V38 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV38 -# wgEncodeGencode2wayConsPseudoV38 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV38 -identifier wgEncodeGencodeBasicAttrsV38 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV38.transcriptId - hg38.wgEncodeGencodeBasicV38.name - -identifier wgEncodeGencodeCompAttrsV38 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV38.transcriptId - hg38.wgEncodeGencodeCompV38.name - -identifier wgEncodeGencodePseudoGeneAttrsV38 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV38.transcriptId - hg38.wgEncodeGencodePseudoGeneV38.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV38) -identifier wgEncodeGencodeGeneSourceV38 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV38.geneId - hg38.wgEncodeGencodeAttrsV38.geneId - -identifier wgEncodeGencodeGeneSymbolV38 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV38 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV38 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV38 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV38 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV38.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV38 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV38 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV38.transcriptId - hg38.wgEncodeGencodeAttrsV38.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV38 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV38 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV38 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV38 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV38 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV38.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV38.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV38 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV38.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV38.transcriptId minCheck=0.80 - -# end Gencode V38 - -# begin Gencode V39 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV39 -# wgEncodeGencode2wayConsPseudoV39 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV39 -identifier wgEncodeGencodeBasicAttrsV39 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV39.transcriptId - hg38.wgEncodeGencodeBasicV39.name - -identifier wgEncodeGencodeCompAttrsV39 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV39.transcriptId - hg38.wgEncodeGencodeCompV39.name - -identifier wgEncodeGencodePseudoGeneAttrsV39 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV39.transcriptId - hg38.wgEncodeGencodePseudoGeneV39.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV39) -identifier wgEncodeGencodeGeneSourceV39 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV39.geneId - hg38.wgEncodeGencodeAttrsV39.geneId - -identifier wgEncodeGencodeGeneSymbolV39 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV39 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV39 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV39 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV39 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV39.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV39 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV39 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV39.transcriptId - hg38.wgEncodeGencodeAttrsV39.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV39 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV39 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV39 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV39 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV39 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV39.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV39.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV39 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV39.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV39.transcriptId minCheck=0.80 - -# end Gencode V39 - -# begin Gencode V40 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV40 -# wgEncodeGencode2wayConsPseudoV40 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV40 -identifier wgEncodeGencodeBasicAttrsV40 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV40.transcriptId - hg38.wgEncodeGencodeBasicV40.name - -identifier wgEncodeGencodeCompAttrsV40 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV40.transcriptId - hg38.wgEncodeGencodeCompV40.name - -identifier wgEncodeGencodePseudoGeneAttrsV40 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV40.transcriptId - hg38.wgEncodeGencodePseudoGeneV40.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV40) -identifier wgEncodeGencodeGeneSourceV40 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV40.geneId - hg38.wgEncodeGencodeAttrsV40.geneId - -identifier wgEncodeGencodeGeneSymbolV40 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV40 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV40 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV40 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV40 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV40.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV40 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV40 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV40.transcriptId - hg38.wgEncodeGencodeAttrsV40.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV40 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV40 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV40 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV40 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV40 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV40.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV40.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV40 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV40.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV40.transcriptId minCheck=0.80 - -# end Gencode V40 - -# begin Gencode V41 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV41 -# wgEncodeGencode2wayConsPseudoV41 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV41 -identifier wgEncodeGencodeBasicAttrsV41 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV41.transcriptId - hg38.wgEncodeGencodeBasicV41.name - -identifier wgEncodeGencodeCompAttrsV41 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV41.transcriptId - hg38.wgEncodeGencodeCompV41.name - -identifier wgEncodeGencodePseudoGeneAttrsV41 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV41.transcriptId - hg38.wgEncodeGencodePseudoGeneV41.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV41) -identifier wgEncodeGencodeGeneSourceV41 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV41.geneId - hg38.wgEncodeGencodeAttrsV41.geneId - -identifier wgEncodeGencodeGeneSymbolV41 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV41 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV41 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV41 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV41 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV41.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV41 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV41 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV41.transcriptId - hg38.wgEncodeGencodeAttrsV41.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV41 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV41 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV41 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV41 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV41 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV41.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV41.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV41 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV41.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.80 - -# end Gencode V41 - -# begin Gencode V42 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV42 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV42 -identifier wgEncodeGencodeBasicAttrsV42 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV42.transcriptId - hg38.wgEncodeGencodeBasicV42.name - -identifier wgEncodeGencodeCompAttrsV42 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV42.transcriptId - hg38.wgEncodeGencodeCompV42.name - -identifier wgEncodeGencodePseudoGeneAttrsV42 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV42.transcriptId - hg38.wgEncodeGencodePseudoGeneV42.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV42) -identifier wgEncodeGencodeGeneSourceV42 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV42.geneId - hg38.wgEncodeGencodeAttrsV42.geneId - -identifier wgEncodeGencodeGeneSymbolV42 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV42 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV42 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV42 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV42 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV42.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV42 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV42 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV42.transcriptId - hg38.wgEncodeGencodeAttrsV42.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV42 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV42 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV42 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV42 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV42 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV42.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV42.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV42 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV42.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV42.transcriptId minCheck=0.80 - -# end Gencode V42 - -# begin Gencode V43 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV43 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV43 -identifier wgEncodeGencodeBasicAttrsV43 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV43.transcriptId - hg38.wgEncodeGencodeBasicV43.name - -identifier wgEncodeGencodeCompAttrsV43 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV43.transcriptId - hg38.wgEncodeGencodeCompV43.name - -identifier wgEncodeGencodePseudoGeneAttrsV43 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV43.transcriptId - hg38.wgEncodeGencodePseudoGeneV43.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV43) -identifier wgEncodeGencodeGeneSourceV43 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV43.geneId - hg38.wgEncodeGencodeAttrsV43.geneId - -identifier wgEncodeGencodeGeneSymbolV43 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV43 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV43 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV43 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV43 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV43.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV43 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV43 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV43.transcriptId - hg38.wgEncodeGencodeAttrsV43.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV43 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV43 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV43 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV43 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV43 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV43.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV43.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV43 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV43.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV43.transcriptId minCheck=0.80 - -# end Gencode V43 - -# begin Gencode V44 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV44 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV44 -identifier wgEncodeGencodeBasicAttrsV44 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV44.transcriptId - hg38.wgEncodeGencodeBasicV44.name - -identifier wgEncodeGencodeCompAttrsV44 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV44.transcriptId - hg38.wgEncodeGencodeCompV44.name - -identifier wgEncodeGencodePseudoGeneAttrsV44 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV44.transcriptId - hg38.wgEncodeGencodePseudoGeneV44.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV44) -identifier wgEncodeGencodeGeneSourceV44 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV44.geneId - hg38.wgEncodeGencodeAttrsV44.geneId - -identifier wgEncodeGencodeGeneSymbolV44 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV44 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV44 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV44 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV44 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV44.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV44 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV44 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV44.transcriptId - hg38.wgEncodeGencodeAttrsV44.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV44 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV44 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV44 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV44 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV44 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV44.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV44.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV44 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV44.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV44.transcriptId minCheck=0.50 - -# end Gencode V44 - -# begin Gencode V45 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV45 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV45 -identifier wgEncodeGencodeBasicAttrsV45 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV45.transcriptId - hg38.wgEncodeGencodeBasicV45.name - -identifier wgEncodeGencodeCompAttrsV45 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV45.transcriptId - hg38.wgEncodeGencodeCompV45.name - -identifier wgEncodeGencodePseudoGeneAttrsV45 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV45.transcriptId - hg38.wgEncodeGencodePseudoGeneV45.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV45) -identifier wgEncodeGencodeGeneSourceV45 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV45.geneId - hg38.wgEncodeGencodeAttrsV45.geneId - -identifier wgEncodeGencodeGeneSymbolV45 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV45 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV45 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV45 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV45 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV45.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV45 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV45 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV45.transcriptId - hg38.wgEncodeGencodeAttrsV45.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV45 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV45 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV45 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV45 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV45 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV45.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV45.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV45 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV45.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV45.transcriptId minCheck=0.50 - -# end Gencode V45 - -# begin Gencode V46 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV46 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV46 -identifier wgEncodeGencodeBasicAttrsV46 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV46.transcriptId - hg38.wgEncodeGencodeBasicV46.name - -identifier wgEncodeGencodeCompAttrsV46 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV46.transcriptId - hg38.wgEncodeGencodeCompV46.name - -identifier wgEncodeGencodePseudoGeneAttrsV46 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV46.transcriptId - hg38.wgEncodeGencodePseudoGeneV46.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV46) -identifier wgEncodeGencodeGeneSourceV46 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV46.geneId - hg38.wgEncodeGencodeAttrsV46.geneId - -identifier wgEncodeGencodeGeneSymbolV46 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV46 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV46 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV46 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV46 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV46.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV46 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV46 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV46.transcriptId - hg38.wgEncodeGencodeAttrsV46.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV46 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV46 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV46 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV46 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV46 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV46.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV46.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV46 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV46.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV46.transcriptId minCheck=0.50 - -# end Gencode V46 - -# begin Gencode V47 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV47 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV47 -identifier wgEncodeGencodeBasicAttrsV47 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV47.transcriptId - hg38.wgEncodeGencodeBasicV47.name - -identifier wgEncodeGencodeCompAttrsV47 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV47.transcriptId - hg38.wgEncodeGencodeCompV47.name - -identifier wgEncodeGencodePseudoGeneAttrsV47 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV47.transcriptId - hg38.wgEncodeGencodePseudoGeneV47.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV47) -identifier wgEncodeGencodeGeneSourceV47 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV47.geneId - hg38.wgEncodeGencodeAttrsV47.geneId - -identifier wgEncodeGencodeGeneSymbolV47 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV47 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV47 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV47 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV47 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV47.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV47 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV47 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV47.transcriptId - hg38.wgEncodeGencodeAttrsV47.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV47 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV47 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV47 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.28 - -identifier wgEncodeGencodeAnnotationRemarkV47 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV47 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV47.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV47.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV47 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV47.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV47.transcriptId minCheck=0.50 - -# end Gencode V47 - -# begin Gencode V48 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV48 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV48 -identifier wgEncodeGencodeBasicAttrsV48 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV48.transcriptId - hg38.wgEncodeGencodeBasicV48.name - -identifier wgEncodeGencodeCompAttrsV48 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV48.transcriptId - hg38.wgEncodeGencodeCompV48.name - -identifier wgEncodeGencodePseudoGeneAttrsV48 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV48.transcriptId - hg38.wgEncodeGencodePseudoGeneV48.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV48) -identifier wgEncodeGencodeGeneSourceV48 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV48.geneId - hg38.wgEncodeGencodeAttrsV48.geneId - -identifier wgEncodeGencodeGeneSymbolV48 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV48 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedV48 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV48 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV48 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV48.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV48 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV48 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV48.transcriptId - hg38.wgEncodeGencodeAttrsV48.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV48 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV48 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV48 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkV48 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV48 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV48.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV48.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV48 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV48.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV48.transcriptId minCheck=0.50 - -# end Gencode V48 - -# begin Gencode V49 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV49 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV49 -identifier wgEncodeGencodeBasicAttrsV49 -"Link together Gencode Basic Table with Attributes table" - hg38.wgEncodeGencodeAttrsV49.transcriptId - hg38.wgEncodeGencodeBasicV49.name - -identifier wgEncodeGencodeCompAttrsV49 -"Link together Gencode Comprehensive Table with Attributes table" - hg38.wgEncodeGencodeAttrsV49.transcriptId - hg38.wgEncodeGencodeCompV49.name - -identifier wgEncodeGencodePseudoGeneAttrsV49 -"Link together Gencode PseudoGene Table with Attributes table" - hg38.wgEncodeGencodeAttrsV49.transcriptId - hg38.wgEncodeGencodePseudoGeneV49.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV49) -identifier wgEncodeGencodeGeneSourceV49 -"Link together Gencode Gene Source table with Attributes table" - hg38.wgEncodeGencodeGeneSourceV49.geneId - hg38.wgEncodeGencodeAttrsV49.geneId - -identifier wgEncodeGencodeGeneSymbolV49 -"Link together Gencode gene symbol table with Attributes table" - hg38.wgEncodeGencodeGeneSymbolV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV49 -"Link together Gencode Pdb table with Attributes table" - hg38.wgEncodeGencodePdbV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedV49 -"Link together Gencode Pubmed table with Attributes table" - hg38.wgEncodeGencodePubMedV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV49 -"Link together Gencode RefSeq table with Attributes table" - hg38.wgEncodeGencodeRefSeqV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV49 -"Link together Gencode RefSeq table with refGene track" - hg38.wgEncodeGencodeRefSeqV49.rnaAcc dupeOk chopAfter=. - hg38.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV49 -"Link together Gencode Tag table with Attributes table" - hg38.wgEncodeGencodeTagV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV49 -"Link together Gencode Transcript Source table with Attributes table" - hg38.wgEncodeGencodeTranscriptSourceV49.transcriptId - hg38.wgEncodeGencodeAttrsV49.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV49 -"Link together Gencode Transcript Support table with Attributes table" - hg38.wgEncodeGencodeTranscriptSupportV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV49 -"Link together Gencode Transcription Support Level table with Attributes table" - hg38.wgEncodeGencodeTranscriptionSupportLevelV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV49 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeUniProtV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkV49 -"Link together Gencode Annotation Remark table with Attributes table" - hg38.wgEncodeGencodeAnnotationRemarkV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV49 -"Link together Gencode UniProt Support table with Attributes table" - hg38.wgEncodeGencodeEntrezGeneV49.transcriptId dupeOk - hg38.wgEncodeGencodeEntrezGeneV49.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportV49 -"Link together Gencode Exon Support table with Attributes table" - hg38.wgEncodeGencodeExonSupportV49.transcriptId dupeOk - hg38.wgEncodeGencodeAttrsV49.transcriptId minCheck=0.50 - -# end Gencode V49 - -# begin Gencode V24lift37 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaV24lift37 -# wgEncodeGencode2wayConsPseudoV24lift37 - -# gencode genepreds with joining through wgEncodeGencodeAttrsV24lift37 -identifier wgEncodeGencodeBasicAttrsV24lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId - hg19.wgEncodeGencodeBasicV24lift37.name - -identifier wgEncodeGencodeCompAttrsV24lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId - hg19.wgEncodeGencodeCompV24lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV24lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV24lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV24lift37) -identifier wgEncodeGencodeExonSupportV24lift37 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceV24lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV24lift37.geneId - hg19.wgEncodeGencodeAttrsV24lift37.geneId - -identifier wgEncodeGencodePdbV24lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV24lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV24lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV24lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV24lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV24lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV24lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV24lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV24lift37.transcriptId - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV24lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.2297 - -identifier wgEncodeGencodeTranscriptionSupportLevelV24lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV24lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV24lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV24lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV24lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV24lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV24lift37.transcriptId minCheck=0.358209 - -# end Gencode V24lift37 - -# begin Gencode V26lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV26lift37 -# wgEncodeGencode2wayConsPseudoV26lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV26lift37 -identifier wgEncodeGencodeBasicAttrsV26lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId - hg19.wgEncodeGencodeBasicV26lift37.name - -identifier wgEncodeGencodeCompAttrsV26lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId - hg19.wgEncodeGencodeCompV26lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV26lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV26lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV26lift37) -identifier wgEncodeGencodeGeneSourceV26lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV26lift37.geneId - hg19.wgEncodeGencodeAttrsV26lift37.geneId - -identifier wgEncodeGencodePdbV26lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedV26lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV26lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV26lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV26lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV26lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV26lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV26lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV26lift37.transcriptId - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV26lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV26lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV26lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV26lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV26lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV26lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV26lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV26lift37.transcriptId minCheck=0.358209 - -# end Gencode V26lift37 - -# begin Gencode V27lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV27lift37 -# wgEncodeGencode2wayConsPseudoV27lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV27lift37 -identifier wgEncodeGencodeBasicAttrsV27lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId - hg19.wgEncodeGencodeBasicV27lift37.name - -identifier wgEncodeGencodeCompAttrsV27lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId - hg19.wgEncodeGencodeCompV27lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV27lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV27lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV27lift37) -identifier wgEncodeGencodeExonSupportV27lift37 -"Link together Gencode Exon Support table with Attributes table" - hg19.wgEncodeGencodeExonSupportV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.95 - -identifier wgEncodeGencodeGeneSourceV27lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV27lift37.geneId - hg19.wgEncodeGencodeAttrsV27lift37.geneId - -identifier wgEncodeGencodePdbV27lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV27lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV27lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV27lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV27lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV27lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV27lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV27lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV27lift37.transcriptId - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV27lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV27lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV27lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV27lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV27lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV27lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV27lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV27lift37.transcriptId minCheck=0.358209 - -# end Gencode V27lift37 - -# begin Gencode V28lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV28lift37 -# wgEncodeGencode2wayConsPseudoV28lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV28lift37 -identifier wgEncodeGencodeBasicAttrsV28lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId - hg19.wgEncodeGencodeBasicV28lift37.name - -identifier wgEncodeGencodeCompAttrsV28lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId - hg19.wgEncodeGencodeCompV28lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV28lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV28lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV28lift37) -identifier wgEncodeGencodeGeneSourceV28lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV28lift37.geneId - hg19.wgEncodeGencodeAttrsV28lift37.geneId - -identifier wgEncodeGencodePdbV28lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV28lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV28lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV28lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV28lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV28lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV28lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV28lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV28lift37.transcriptId - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV28lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV28lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV28lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV28lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV28lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV28lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV28lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV28lift37.transcriptId minCheck=0.358209 - -# end Gencode V28lift37 - -# begin Gencode V29lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV29lift37 -# wgEncodeGencode2wayConsPseudoV29lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV29lift37 -identifier wgEncodeGencodeBasicAttrsV29lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId - hg19.wgEncodeGencodeBasicV29lift37.name - -identifier wgEncodeGencodeCompAttrsV29lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId - hg19.wgEncodeGencodeCompV29lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV29lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV29lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV29lift37) -identifier wgEncodeGencodeGeneSourceV29lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV29lift37.geneId - hg19.wgEncodeGencodeAttrsV29lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV29lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV29lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV29lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV29lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV29lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV29lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV29lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV29lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV29lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV29lift37.transcriptId - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV29lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV29lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV29lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV29lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV29lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV29lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV29lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV29lift37.transcriptId minCheck=0.358209 - -# end Gencode V29lift37 - -# begin Gencode V30lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV30lift37 -# wgEncodeGencode2wayConsPseudoV30lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV30lift37 -identifier wgEncodeGencodeBasicAttrsV30lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId - hg19.wgEncodeGencodeBasicV30lift37.name - -identifier wgEncodeGencodeCompAttrsV30lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId - hg19.wgEncodeGencodeCompV30lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV30lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV30lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV30lift37) -identifier wgEncodeGencodeGeneSourceV30lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV30lift37.geneId - hg19.wgEncodeGencodeAttrsV30lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV30lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV30lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV30lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV30lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV30lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV30lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV30lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.373378 - hg19.wgEncodeGencodeRefSeqV30lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV30lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV30lift37.transcriptId - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV30lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV30lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV30lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkV30lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV30lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV30lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV30lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV30lift37.transcriptId minCheck=0.358209 - -# end Gencode V30lift37 - - -# begin Gencode V31lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV31lift37 -# wgEncodeGencode2wayConsPseudoV31lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV31lift37 -identifier wgEncodeGencodeBasicAttrsV31lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId - hg19.wgEncodeGencodeBasicV31lift37.name - -identifier wgEncodeGencodeCompAttrsV31lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId - hg19.wgEncodeGencodeCompV31lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV31lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV31lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV31lift37) -identifier wgEncodeGencodeGeneSourceV31lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV31lift37.geneId - hg19.wgEncodeGencodeAttrsV31lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV31lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV31lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV31lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV31lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV31lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV31lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV31lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV31lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV31lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV31lift37.transcriptId - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV31lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV31lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV31lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV31lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV31lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV31lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV31lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV31lift37.transcriptId minCheck=0.35 - -# end Gencode V31lift37 - -# begin Gencode V32lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV32lift37 -# wgEncodeGencode2wayConsPseudoV32lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV32lift37 -identifier wgEncodeGencodeBasicAttrsV32lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId - hg19.wgEncodeGencodeBasicV32lift37.name - -identifier wgEncodeGencodeCompAttrsV32lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId - hg19.wgEncodeGencodeCompV32lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV32lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV32lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV32lift37) -identifier wgEncodeGencodeGeneSourceV32lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV32lift37.geneId - hg19.wgEncodeGencodeAttrsV32lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV32lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV32lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV32lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV32lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV32lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV32lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV32lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV32lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV32lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV32lift37.transcriptId - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV32lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV32lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV32lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV32lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV32lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV32lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV32lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV32lift37.transcriptId minCheck=0.35 - -# end Gencode V32lift37 - -# begin Gencode V33lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV33lift37 -# wgEncodeGencode2wayConsPseudoV33lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV33lift37 -identifier wgEncodeGencodeBasicAttrsV33lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId - hg19.wgEncodeGencodeBasicV33lift37.name - -identifier wgEncodeGencodeCompAttrsV33lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId - hg19.wgEncodeGencodeCompV33lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV33lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV33lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV33lift37) -identifier wgEncodeGencodeGeneSourceV33lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV33lift37.geneId - hg19.wgEncodeGencodeAttrsV33lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV33lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV33lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV33lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV33lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV33lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV33lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV33lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV33lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV33lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV33lift37.transcriptId - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV33lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV33lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV33lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV33lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV33lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV33lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV33lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV33lift37.transcriptId minCheck=0.35 - -# end Gencode V33lift37 - -# begin Gencode V34lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV34lift37 -# wgEncodeGencode2wayConsPseudoV34lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV34lift37 -identifier wgEncodeGencodeBasicAttrsV34lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId - hg19.wgEncodeGencodeBasicV34lift37.name - -identifier wgEncodeGencodeCompAttrsV34lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId - hg19.wgEncodeGencodeCompV34lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV34lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV34lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV34lift37) -identifier wgEncodeGencodeGeneSourceV34lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV34lift37.geneId - hg19.wgEncodeGencodeAttrsV34lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV34lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV34lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV34lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV34lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV34lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV34lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV34lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV34lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV34lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV34lift37.transcriptId - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV34lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV34lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV34lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV34lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV34lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV34lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV34lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV34lift37.transcriptId minCheck=0.35 - -# end Gencode V34lift37 - -# begin Gencode V35lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV35lift37 -# wgEncodeGencode2wayConsPseudoV35lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV35lift37 -identifier wgEncodeGencodeBasicAttrsV35lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId - hg19.wgEncodeGencodeBasicV35lift37.name - -identifier wgEncodeGencodeCompAttrsV35lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId - hg19.wgEncodeGencodeCompV35lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV35lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV35lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV35lift37) -identifier wgEncodeGencodeGeneSourceV35lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV35lift37.geneId - hg19.wgEncodeGencodeAttrsV35lift37.geneId minCheck=0.99 - -identifier wgEncodeGencodeGeneSymbolV35lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV35lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV35lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV35lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV35lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV35lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV35lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV35lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV35lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV35lift37.transcriptId - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.99 - -identifier wgEncodeGencodeTranscriptSupportV35lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelV35lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV35lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV35lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV35lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV35lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV35lift37.transcriptId minCheck=0.35 - -# end Gencode V35lift37 - -# begin Gencode V36lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV36lift37 -# wgEncodeGencode2wayConsPseudoV36lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV36lift37 -identifier wgEncodeGencodeBasicAttrsV36lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId - hg19.wgEncodeGencodeBasicV36lift37.name - -identifier wgEncodeGencodeCompAttrsV36lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId - hg19.wgEncodeGencodeCompV36lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV36lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV36lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV36lift37) -identifier wgEncodeGencodeGeneSourceV36lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV36lift37.geneId - hg19.wgEncodeGencodeAttrsV36lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV36lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV36lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV36lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV36lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV36lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV36lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV36lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV36lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV36lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV36lift37.transcriptId - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV36lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.08 - -identifier wgEncodeGencodeTranscriptionSupportLevelV36lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV36lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV36lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV36lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV36lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV36lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV36lift37.transcriptId minCheck=0.35 - -# end Gencode V36lift37 - -# begin Gencode V37lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV37lift37 -# wgEncodeGencode2wayConsPseudoV37lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV37lift37 -identifier wgEncodeGencodeBasicAttrsV37lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId - hg19.wgEncodeGencodeBasicV37lift37.name - -identifier wgEncodeGencodeCompAttrsV37lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId - hg19.wgEncodeGencodeCompV37lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV37lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV37lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV37lift37) -identifier wgEncodeGencodeGeneSourceV37lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV37lift37.geneId - hg19.wgEncodeGencodeAttrsV37lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV37lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV37lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV37lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV37lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV37lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV37lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV37lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.36 - hg19.wgEncodeGencodeRefSeqV37lift37.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceV37lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV37lift37.transcriptId - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV37lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.08 - -identifier wgEncodeGencodeTranscriptionSupportLevelV37lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV37lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV37lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV37lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV37lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV37lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV37lift37.transcriptId minCheck=0.35 - -# end Gencode V37lift37 - -# begin Gencode V38lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV38lift37 -# wgEncodeGencode2wayConsPseudoV38lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV38lift37 -identifier wgEncodeGencodeBasicAttrsV38lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId - hg19.wgEncodeGencodeBasicV38lift37.name - -identifier wgEncodeGencodeCompAttrsV38lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId - hg19.wgEncodeGencodeCompV38lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV38lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV38lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV38lift37) -identifier wgEncodeGencodeGeneSourceV38lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV38lift37.geneId - hg19.wgEncodeGencodeAttrsV38lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV38lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV38lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV38lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV38lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV38lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV38lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV38lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV38lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV38lift37.transcriptId - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV38lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV38lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV38lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV38lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV38lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV38lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV38lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV38lift37.transcriptId minCheck=0.35 - -# end Gencode V38lift37 - -# begin Gencode V39lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV39lift37 -# wgEncodeGencode2wayConsPseudoV39lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV39lift37 -identifier wgEncodeGencodeBasicAttrsV39lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId - hg19.wgEncodeGencodeBasicV39lift37.name - -identifier wgEncodeGencodeCompAttrsV39lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId - hg19.wgEncodeGencodeCompV39lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV39lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV39lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV39lift37) -identifier wgEncodeGencodeGeneSourceV39lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV39lift37.geneId - hg19.wgEncodeGencodeAttrsV39lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV39lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV39lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV39lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV39lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV39lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV39lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV39lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV39lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV39lift37.transcriptId - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV39lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV39lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV39lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV39lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV39lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV39lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV39lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV39lift37.transcriptId minCheck=0.35 - -# end Gencode V39lift37 - -# begin Gencode V40lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV40lift37 -# wgEncodeGencode2wayConsPseudoV40lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV40lift37 -identifier wgEncodeGencodeBasicAttrsV40lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId - hg19.wgEncodeGencodeBasicV40lift37.name - -identifier wgEncodeGencodeCompAttrsV40lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId - hg19.wgEncodeGencodeCompV40lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV40lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV40lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV40lift37) -identifier wgEncodeGencodeGeneSourceV40lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV40lift37.geneId - hg19.wgEncodeGencodeAttrsV40lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV40lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV40lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV40lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV40lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV40lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV40lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV40lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV40lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV40lift37.transcriptId - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV40lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV40lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV40lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV40lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV40lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV40lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV40lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV40lift37.transcriptId minCheck=0.35 - -# end Gencode V40lift37 - -# begin Gencode V41lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV41lift37 -# wgEncodeGencode2wayConsPseudoV41lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV41lift37 -identifier wgEncodeGencodeBasicAttrsV41lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId - hg19.wgEncodeGencodeBasicV41lift37.name - -identifier wgEncodeGencodeCompAttrsV41lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId - hg19.wgEncodeGencodeCompV41lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV41lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV41lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV41lift37) -identifier wgEncodeGencodeGeneSourceV41lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV41lift37.geneId - hg19.wgEncodeGencodeAttrsV41lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV41lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV41lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV41lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV41lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV41lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV41lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV41lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV41lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV41lift37.transcriptId - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV41lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV41lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV41lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV41lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV41lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV41lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV41lift37.transcriptId minCheck=0.35 - -# end Gencode V41lift37 - -# begin Gencode V42lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV42lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV42lift37 -identifier wgEncodeGencodeBasicAttrsV42lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId - hg19.wgEncodeGencodeBasicV42lift37.name - -identifier wgEncodeGencodeCompAttrsV42lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId - hg19.wgEncodeGencodeCompV42lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV42lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV42lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV42lift37) -identifier wgEncodeGencodeGeneSourceV42lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV42lift37.geneId - hg19.wgEncodeGencodeAttrsV42lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV42lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV42lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV42lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV42lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV42lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV42lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV42lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV42lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV42lift37.transcriptId - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV42lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV42lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV42lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV42lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV42lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV42lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV42lift37.transcriptId minCheck=0.35 - -# end Gencode V42lift37 - -# begin Gencode V43lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV43lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV43lift37 -identifier wgEncodeGencodeBasicAttrsV43lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId - hg19.wgEncodeGencodeBasicV43lift37.name - -identifier wgEncodeGencodeCompAttrsV43lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId - hg19.wgEncodeGencodeCompV43lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV43lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV43lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV43lift37) -identifier wgEncodeGencodeGeneSourceV43lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV43lift37.geneId - hg19.wgEncodeGencodeAttrsV43lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV43lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV43lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV43lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV43lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV43lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV43lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV43lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV43lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV43lift37.transcriptId - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV43lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelV43lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV43lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV43lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV43lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV43lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV43lift37.transcriptId minCheck=0.35 - -# end Gencode V43lift37 - -# begin Gencode V44lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV44lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV44lift37 -identifier wgEncodeGencodeBasicAttrsV44lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId - hg19.wgEncodeGencodeBasicV44lift37.name - -identifier wgEncodeGencodeCompAttrsV44lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId - hg19.wgEncodeGencodeCompV44lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV44lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV44lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV44lift37) -identifier wgEncodeGencodeGeneSourceV44lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV44lift37.geneId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV44lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV44lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV44lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV44lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV44lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV44lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV44lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV44lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV44lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV44lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV44lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV44lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV44lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV44lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV44lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV44lift37.transcriptId minCheck=0.35 - -# end Gencode V44lift37 - -# begin Gencode V45lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV45lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV45lift37 -identifier wgEncodeGencodeBasicAttrsV45lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId - hg19.wgEncodeGencodeBasicV45lift37.name - -identifier wgEncodeGencodeCompAttrsV45lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId - hg19.wgEncodeGencodeCompV45lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV45lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV45lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV45lift37) -identifier wgEncodeGencodeGeneSourceV45lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV45lift37.geneId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV45lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV45lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV45lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV45lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV45lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV45lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV45lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV45lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV45lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV45lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV45lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV45lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV45lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV45lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV45lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV45lift37.transcriptId minCheck=0.35 - -# end Gencode V45lift37 - -# begin Gencode V46lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV46lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV46lift37 -identifier wgEncodeGencodeBasicAttrsV46lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId - hg19.wgEncodeGencodeBasicV46lift37.name - -identifier wgEncodeGencodeCompAttrsV46lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId - hg19.wgEncodeGencodeCompV46lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV46lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV46lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV46lift37) -identifier wgEncodeGencodeGeneSourceV46lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV46lift37.geneId - hg19.wgEncodeGencodeAttrsV46lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV46lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV46lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV46lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqV46lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV46lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV46lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV46lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV46lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV46lift37.transcriptId - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV46lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelV46lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV46lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkV46lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV46lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV46lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV46lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV46lift37.transcriptId minCheck=0.35 - -# end Gencode V46lift37 - -# begin Gencode V47lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV47lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV47lift37 -identifier wgEncodeGencodeBasicAttrsV47lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId - hg19.wgEncodeGencodeBasicV47lift37.name - -identifier wgEncodeGencodeCompAttrsV47lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId - hg19.wgEncodeGencodeCompV47lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV47lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV47lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV47lift37) -identifier wgEncodeGencodeGeneSourceV47lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV47lift37.geneId - hg19.wgEncodeGencodeAttrsV47lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV47lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV47lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedV47lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV47lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV47lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV47lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV47lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV47lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV47lift37.transcriptId - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV47lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV47lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV47lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.28 - -identifier wgEncodeGencodeAnnotationRemarkV47lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV47lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV47lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV47lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV47lift37.transcriptId minCheck=0.35 - -# end Gencode V47lift37 - -# begin Gencode V48lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV48lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV48lift37 -identifier wgEncodeGencodeBasicAttrsV48lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId - hg19.wgEncodeGencodeBasicV48lift37.name - -identifier wgEncodeGencodeCompAttrsV48lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId - hg19.wgEncodeGencodeCompV48lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV48lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV48lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV48lift37) -identifier wgEncodeGencodeGeneSourceV48lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV48lift37.geneId - hg19.wgEncodeGencodeAttrsV48lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV48lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV48lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedV48lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV48lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV48lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV48lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV48lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV48lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV48lift37.transcriptId - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV48lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV48lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV48lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkV48lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV48lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV48lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV48lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV48lift37.transcriptId minCheck=0.35 - -# end Gencode V48lift37 - -# begin Gencode V49lift37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaV49lift37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsV49lift37 -identifier wgEncodeGencodeBasicAttrsV49lift37 -"Link together Gencode Basic Table with Attributes table" - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId - hg19.wgEncodeGencodeBasicV49lift37.name - -identifier wgEncodeGencodeCompAttrsV49lift37 -"Link together Gencode Comprehensive Table with Attributes table" - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId - hg19.wgEncodeGencodeCompV49lift37.name - -identifier wgEncodeGencodePseudoGeneAttrsV49lift37 -"Link together Gencode PseudoGene Table with Attributes table" - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId - hg19.wgEncodeGencodePseudoGeneV49lift37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsV49lift37) -identifier wgEncodeGencodeGeneSourceV49lift37 -"Link together Gencode Gene Source table with Attributes table" - hg19.wgEncodeGencodeGeneSourceV49lift37.geneId - hg19.wgEncodeGencodeAttrsV49lift37.geneId - -identifier wgEncodeGencodeGeneSymbolV49lift37 -"Link together Gencode gene symbol table with Attributes table" - hg19.wgEncodeGencodeGeneSymbolV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbV49lift37 -"Link together Gencode Pdb table with Attributes table" - hg19.wgEncodeGencodePdbV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedV49lift37 -"Link together Gencode Pubmed table with Attributes table" - hg19.wgEncodeGencodePubMedV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqV49lift37 -"Link together Gencode RefSeq table with Attributes table" - hg19.wgEncodeGencodeRefSeqV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneV49lift37 -"Link together Gencode RefSeq table with refGene track" - hg19.wgEncodeGencodeRefSeqV49lift37.rnaAcc dupeOk chopAfter=. - hg19.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagV49lift37 -"Link together Gencode Tag table with Attributes table" - hg19.wgEncodeGencodeTagV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceV49lift37 -"Link together Gencode Transcript Source table with Attributes table" - hg19.wgEncodeGencodeTranscriptSourceV49lift37.transcriptId - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportV49lift37 -"Link together Gencode Transcript Support table with Attributes table" - hg19.wgEncodeGencodeTranscriptSupportV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelV49lift37 -"Link together Gencode Transcription Support Level table with Attributes table" - hg19.wgEncodeGencodeTranscriptionSupportLevelV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtV49lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeUniProtV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkV49lift37 -"Link together Gencode Annotation Remark table with Attributes table" - hg19.wgEncodeGencodeAnnotationRemarkV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeAttrsV49lift37.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneV49lift37 -"Link together Gencode UniProt Support table with Attributes table" - hg19.wgEncodeGencodeEntrezGeneV49lift37.transcriptId dupeOk - hg19.wgEncodeGencodeEntrezGeneV49lift37.transcriptId minCheck=0.35 - -# end Gencode V49lift37 - -# begin Gencode VM2 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM2 -# wgEncodeGencode2wayConsPseudoVM2 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM2 -identifier wgEncodeGencodeBasicAttrsVM2 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM2.transcriptId - mm10.wgEncodeGencodeBasicVM2.name - -identifier wgEncodeGencodeCompAttrsVM2 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM2.transcriptId - mm10.wgEncodeGencodeCompVM2.name - -identifier wgEncodeGencodePseudoGeneAttrsVM2 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM2.transcriptId - mm10.wgEncodeGencodePseudoGeneVM2.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM2) -identifier wgEncodeGencodeExonSupportVM2 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.98202 - -identifier wgEncodeGencodeGeneSourceVM2 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM2.geneId - mm10.wgEncodeGencodeAttrsVM2.geneId - -identifier wgEncodeGencodePdbVM2 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedVM2 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM2 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM2 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM2 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM2.transcriptId - mm10.wgEncodeGencodeAttrsVM2.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM2 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM2 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM2 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM2 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM2.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM2.transcriptId minCheck=0.10 - -# end Gencode VM2 - -# begin Gencode VM3 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM3 -# wgEncodeGencode2wayConsPseudoVM3 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM3 -identifier wgEncodeGencodeBasicAttrsVM3 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM3.transcriptId - mm10.wgEncodeGencodeBasicVM3.name - -identifier wgEncodeGencodeCompAttrsVM3 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM3.transcriptId - mm10.wgEncodeGencodeCompVM3.name - -identifier wgEncodeGencodePseudoGeneAttrsVM3 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM3.transcriptId - mm10.wgEncodeGencodePseudoGeneVM3.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM3) -identifier wgEncodeGencodeExonSupportVM3 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceVM3 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM3.geneId - mm10.wgEncodeGencodeAttrsVM3.geneId - -identifier wgEncodeGencodePdbVM3 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedVM3 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM3 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM3 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM3 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM3.transcriptId - mm10.wgEncodeGencodeAttrsVM3.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM3 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM3 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM3 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM3 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM3.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM3.transcriptId minCheck=0.10 - -# end Gencode VM3 - -# begin Gencode VM4 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM4 -# wgEncodeGencode2wayConsPseudoVM4 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM4 -identifier wgEncodeGencodeBasicAttrsVM4 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM4.transcriptId - mm10.wgEncodeGencodeBasicVM4.name - -identifier wgEncodeGencodeCompAttrsVM4 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM4.transcriptId - mm10.wgEncodeGencodeCompVM4.name - -identifier wgEncodeGencodePseudoGeneAttrsVM4 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM4.transcriptId - mm10.wgEncodeGencodePseudoGeneVM4.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM4) -identifier wgEncodeGencodeExonSupportVM4 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.97 - -identifier wgEncodeGencodeGeneSourceVM4 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM4.geneId - mm10.wgEncodeGencodeAttrsVM4.geneId - -identifier wgEncodeGencodePdbVM4 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.02 - -identifier wgEncodeGencodePubMedVM4 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM4 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM4 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM4 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM4.transcriptId - mm10.wgEncodeGencodeAttrsVM4.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM4 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM4 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM4 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM4 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM4.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM4.transcriptId minCheck=0.10 - -# end Gencode VM4 - -# begin Gencode VM7 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM7 -# wgEncodeGencode2wayConsPseudoVM7 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM7 -identifier wgEncodeGencodeBasicAttrsVM7 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM7.transcriptId - mm10.wgEncodeGencodeBasicVM7.name - -identifier wgEncodeGencodeCompAttrsVM7 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM7.transcriptId - mm10.wgEncodeGencodeCompVM7.name - -identifier wgEncodeGencodePseudoGeneAttrsVM7 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM7.transcriptId - mm10.wgEncodeGencodePseudoGeneVM7.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM7) -identifier wgEncodeGencodeExonSupportVM7 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.96 - -identifier wgEncodeGencodeGeneSourceVM7 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM7.geneId - mm10.wgEncodeGencodeAttrsVM7.geneId - -identifier wgEncodeGencodePdbVM7 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.017 - -identifier wgEncodeGencodePubMedVM7 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM7 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM7 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM7 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM7.transcriptId - mm10.wgEncodeGencodeAttrsVM7.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM7 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM7 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM7 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM7 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM7.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM7.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM7 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM7.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM7.transcriptId minCheck=0.358209 - -# end Gencode VM7 - -# begin Gencode VM8 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM8 -# wgEncodeGencode2wayConsPseudoVM8 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM8 -identifier wgEncodeGencodeBasicAttrsVM8 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM8.transcriptId - mm10.wgEncodeGencodeBasicVM8.name - -identifier wgEncodeGencodeCompAttrsVM8 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM8.transcriptId - mm10.wgEncodeGencodeCompVM8.name - -identifier wgEncodeGencodePseudoGeneAttrsVM8 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM8.transcriptId - mm10.wgEncodeGencodePseudoGeneVM8.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM8) -identifier wgEncodeGencodeExonSupportVM8 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.96 - -identifier wgEncodeGencodeGeneSourceVM8 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM8.geneId - mm10.wgEncodeGencodeAttrsVM8.geneId - -identifier wgEncodeGencodePdbVM8 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.017 - -identifier wgEncodeGencodePubMedVM8 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM8 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM8 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM8 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM8.transcriptId - mm10.wgEncodeGencodeAttrsVM8.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM8 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM8 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM8 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM8 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM8.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM8.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM8 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM8.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM8.transcriptId minCheck=0.358209 - -# end Gencode VM8 - -# begin Gencode VM9 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM9 -# wgEncodeGencode2wayConsPseudoVM9 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM9 -identifier wgEncodeGencodeBasicAttrsVM9 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM9.transcriptId - mm10.wgEncodeGencodeBasicVM9.name - -identifier wgEncodeGencodeCompAttrsVM9 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM9.transcriptId - mm10.wgEncodeGencodeCompVM9.name - -identifier wgEncodeGencodePseudoGeneAttrsVM9 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM9.transcriptId - mm10.wgEncodeGencodePseudoGeneVM9.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM9) -identifier wgEncodeGencodeExonSupportVM9 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.94 - -identifier wgEncodeGencodeGeneSourceVM9 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM9.geneId - mm10.wgEncodeGencodeAttrsVM9.geneId - -identifier wgEncodeGencodePdbVM9 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.017 - -identifier wgEncodeGencodePubMedVM9 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM9 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM9 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM9 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM9.transcriptId - mm10.wgEncodeGencodeAttrsVM9.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM9 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM9 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM9 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM9 -"link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM9.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM9.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM9 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM9.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM9.transcriptId minCheck=0.358209 - -# end Gencode VM9 - -# begin Gencode VM10 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM10 -# wgEncodeGencode2wayConsPseudoVM10 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM10 -identifier wgEncodeGencodeBasicAttrsVM10 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM10.transcriptId - mm10.wgEncodeGencodeBasicVM10.name - -identifier wgEncodeGencodeCompAttrsVM10 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM10.transcriptId - mm10.wgEncodeGencodeCompVM10.name - -identifier wgEncodeGencodePseudoGeneAttrsVM10 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM10.transcriptId - mm10.wgEncodeGencodePseudoGeneVM10.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM10) -identifier wgEncodeGencodeExonSupportVM10 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.94 - -identifier wgEncodeGencodeGeneSourceVM10 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM10.geneId - mm10.wgEncodeGencodeAttrsVM10.geneId - -identifier wgEncodeGencodePdbVM10 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.017 - -identifier wgEncodeGencodePubMedVM10 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM10 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM10 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM10 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM10.transcriptId - mm10.wgEncodeGencodeAttrsVM10.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM10 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM10 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM10 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM10 -"link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM10.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM10.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM10 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM10.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM10.transcriptId minCheck=0.358209 - -# end Gencode VM10 - -# begin Gencode VM11 - -# gencode genepreds with no associations -# wgEncodeGencodePolyaVM11 -# wgEncodeGencode2wayConsPseudoVM11 - -# gencode genepreds with joining through wgEncodeGencodeAttrsVM11 -identifier wgEncodeGencodeBasicAttrsVM11 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM11.transcriptId - mm10.wgEncodeGencodeBasicVM11.name - -identifier wgEncodeGencodeCompAttrsVM11 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM11.transcriptId - mm10.wgEncodeGencodeCompVM11.name - -identifier wgEncodeGencodePseudoGeneAttrsVM11 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM11.transcriptId - mm10.wgEncodeGencodePseudoGeneVM11.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM11) -identifier wgEncodeGencodeExonSupportVM11 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.94 - -identifier wgEncodeGencodeGeneSourceVM11 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM11.geneId - mm10.wgEncodeGencodeAttrsVM11.geneId - -identifier wgEncodeGencodePdbVM11 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.017 - -identifier wgEncodeGencodePubMedVM11 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.635488 - -identifier wgEncodeGencodeRefSeqVM11 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeTagVM11 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.373378 - -identifier wgEncodeGencodeTranscriptSourceVM11 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM11.transcriptId - mm10.wgEncodeGencodeAttrsVM11.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM11 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.25 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM11 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM11 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM11 -"link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM11.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM11.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM11 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM11.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM11.transcriptId minCheck=0.358209 - -# end Gencode VM11 - -# begin Gencode VM13 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM13 -# wgEncodeGencode2wayConsPseudoVM13 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM13 -identifier wgEncodeGencodeBasicAttrsVM13 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM13.transcriptId - mm10.wgEncodeGencodeBasicVM13.name - -identifier wgEncodeGencodeCompAttrsVM13 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM13.transcriptId - mm10.wgEncodeGencodeCompVM13.name - -identifier wgEncodeGencodePseudoGeneAttrsVM13 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM13.transcriptId - mm10.wgEncodeGencodePseudoGeneVM13.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM13) -identifier wgEncodeGencodeExonSupportVM13 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.90 - -identifier wgEncodeGencodeGeneSourceVM13 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM13.geneId - mm10.wgEncodeGencodeAttrsVM13.geneId - -identifier wgEncodeGencodePdbVM13 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM13 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM13 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM13 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM13.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM13 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.373378 - mm10.wgEncodeGencodeRefSeqVM13.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM13 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM13.transcriptId - mm10.wgEncodeGencodeAttrsVM13.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM13 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM13 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM13 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM13 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM13.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM13.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM13 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM13.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM13.transcriptId minCheck=0.358209 - -# end Gencode VM13 - -# begin Gencode VM14 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM14 -# wgEncodeGencode2wayConsPseudoVM14 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM14 -identifier wgEncodeGencodeBasicAttrsVM14 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM14.transcriptId - mm10.wgEncodeGencodeBasicVM14.name - -identifier wgEncodeGencodeCompAttrsVM14 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM14.transcriptId - mm10.wgEncodeGencodeCompVM14.name - -identifier wgEncodeGencodePseudoGeneAttrsVM14 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM14.transcriptId - mm10.wgEncodeGencodePseudoGeneVM14.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM14) -identifier wgEncodeGencodeExonSupportVM14 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.95 - -identifier wgEncodeGencodeGeneSourceVM14 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM14.geneId - mm10.wgEncodeGencodeAttrsVM14.geneId - -identifier wgEncodeGencodePdbVM14 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM14 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM14 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM14 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM14.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM14 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.373378 - mm10.wgEncodeGencodeRefSeqVM14.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM14 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM14.transcriptId - mm10.wgEncodeGencodeAttrsVM14.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM14 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM14 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM14 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM14 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM14.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM14.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM14 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM14.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM14.transcriptId minCheck=0.358209 - -# end Gencode VM14 - -# begin Gencode VM16 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM16 -# wgEncodeGencode2wayConsPseudoVM16 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM16 -identifier wgEncodeGencodeBasicAttrsVM16 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM16.transcriptId - mm10.wgEncodeGencodeBasicVM16.name - -identifier wgEncodeGencodeCompAttrsVM16 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM16.transcriptId - mm10.wgEncodeGencodeCompVM16.name - -identifier wgEncodeGencodePseudoGeneAttrsVM16 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM16.transcriptId - mm10.wgEncodeGencodePseudoGeneVM16.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM16) -identifier wgEncodeGencodeGeneSourceVM16 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM16.geneId - mm10.wgEncodeGencodeAttrsVM16.geneId - -identifier wgEncodeGencodePdbVM16 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM16 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM16 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM16 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM16.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM16 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.373378 - mm10.wgEncodeGencodeRefSeqVM16.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM16 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM16.transcriptId - mm10.wgEncodeGencodeAttrsVM16.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM16 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM16 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM16 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM16 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM16 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM16.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM16.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportVM16 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM16.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM16.transcriptId minCheck=0.95 - -# end Gencode VM16 - -# begin Gencode VM18 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM18 -# wgEncodeGencode2wayConsPseudoVM18 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM18 -identifier wgEncodeGencodeBasicAttrsVM18 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM18.transcriptId - mm10.wgEncodeGencodeBasicVM18.name - -identifier wgEncodeGencodeCompAttrsVM18 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM18.transcriptId - mm10.wgEncodeGencodeCompVM18.name - -identifier wgEncodeGencodePseudoGeneAttrsVM18 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM18.transcriptId - mm10.wgEncodeGencodePseudoGeneVM18.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM18) -identifier wgEncodeGencodeGeneSourceVM18 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM18.geneId - mm10.wgEncodeGencodeAttrsVM18.geneId - -identifier wgEncodeGencodePdbVM18 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM18 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM18 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM18 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM18.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM18 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.373378 - mm10.wgEncodeGencodeRefSeqVM18.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM18 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM18.transcriptId - mm10.wgEncodeGencodeAttrsVM18.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM18 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM18 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM18 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM18 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM18 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM18.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM18.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportVM18 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM18.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM18.transcriptId minCheck=0.95 - -# end Gencode VM18 - -# begin Gencode VM21 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM21 -# wgEncodeGencode2wayConsPseudoVM21 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM21 -identifier wgEncodeGencodeBasicAttrsVM21 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM21.transcriptId - mm10.wgEncodeGencodeBasicVM21.name - -identifier wgEncodeGencodeCompAttrsVM21 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM21.transcriptId - mm10.wgEncodeGencodeCompVM21.name - -identifier wgEncodeGencodePseudoGeneAttrsVM21 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM21.transcriptId - mm10.wgEncodeGencodePseudoGeneVM21.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM21) -identifier wgEncodeGencodeGeneSourceVM21 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM21.geneId - mm10.wgEncodeGencodeAttrsVM21.geneId - -identifier wgEncodeGencodeGeneSymbolVM21 -"Link together Gencode gene symbol table with Attributes table" - mm10.wgEncodeGencodeGeneSymbolVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM21 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM21 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM21 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM21 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM21.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM21 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.373378 - mm10.wgEncodeGencodeRefSeqVM21.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM21 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM21.transcriptId - mm10.wgEncodeGencodeAttrsVM21.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM21 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM21 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM21 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeAnnotationRemarkVM21 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM21 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM21.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM21.transcriptId minCheck=0.358209 - -identifier wgEncodeGencodeExonSupportVM21 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM21.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM21.transcriptId minCheck=0.95 - -# end Gencode VM21 - -# begin Gencode VM22 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM22 -# wgEncodeGencode2wayConsPseudoVM22 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM22 -identifier wgEncodeGencodeBasicAttrsVM22 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM22.transcriptId - mm10.wgEncodeGencodeBasicVM22.name - -identifier wgEncodeGencodeCompAttrsVM22 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM22.transcriptId - mm10.wgEncodeGencodeCompVM22.name - -identifier wgEncodeGencodePseudoGeneAttrsVM22 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM22.transcriptId - mm10.wgEncodeGencodePseudoGeneVM22.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM22) -identifier wgEncodeGencodeGeneSourceVM22 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM22.geneId - mm10.wgEncodeGencodeAttrsVM22.geneId - -identifier wgEncodeGencodeGeneSymbolVM22 -"Link together Gencode gene symbol table with Attributes table" - mm10.wgEncodeGencodeGeneSymbolVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM22 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM22 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM22 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM22 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM22.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM22 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.36 - mm10.wgEncodeGencodeRefSeqVM22.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM22 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM22.transcriptId - mm10.wgEncodeGencodeAttrsVM22.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM22 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM22 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM22 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM22 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM22 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM22.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM22.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM22 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM22.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM22.transcriptId minCheck=0.90 - -# end Gencode VM22 - -# begin Gencode VM23 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM23 -# wgEncodeGencode2wayConsPseudoVM23 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM23 -identifier wgEncodeGencodeBasicAttrsVM23 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM23.transcriptId - mm10.wgEncodeGencodeBasicVM23.name - -identifier wgEncodeGencodeCompAttrsVM23 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM23.transcriptId - mm10.wgEncodeGencodeCompVM23.name - -identifier wgEncodeGencodePseudoGeneAttrsVM23 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM23.transcriptId - mm10.wgEncodeGencodePseudoGeneVM23.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM23) -identifier wgEncodeGencodeGeneSourceVM23 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM23.geneId - mm10.wgEncodeGencodeAttrsVM23.geneId - -identifier wgEncodeGencodeGeneSymbolVM23 -"Link together Gencode gene symbol table with Attributes table" - mm10.wgEncodeGencodeGeneSymbolVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM23 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM23 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM23 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM23 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM23.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM23 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.36 - mm10.wgEncodeGencodeRefSeqVM23.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM23 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM23.transcriptId - mm10.wgEncodeGencodeAttrsVM23.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM23 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM23 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM23 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM23 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM23 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM23.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM23.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM23 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM23.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM23.transcriptId minCheck=0.90 - -# end Gencode VM23 - -# begin Gencode VM24 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM24 -# wgEncodeGencode2wayConsPseudoVM24 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM24 -identifier wgEncodeGencodeBasicAttrsVM24 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM24.transcriptId - mm10.wgEncodeGencodeBasicVM24.name - -identifier wgEncodeGencodeCompAttrsVM24 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM24.transcriptId - mm10.wgEncodeGencodeCompVM24.name - -identifier wgEncodeGencodePseudoGeneAttrsVM24 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM24.transcriptId - mm10.wgEncodeGencodePseudoGeneVM24.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM24) -identifier wgEncodeGencodeGeneSourceVM24 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM24.geneId - mm10.wgEncodeGencodeAttrsVM24.geneId - -identifier wgEncodeGencodeGeneSymbolVM24 -"Link together Gencode gene symbol table with Attributes table" - mm10.wgEncodeGencodeGeneSymbolVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM24 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM24 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM24 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM24 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM24.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM24 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.36 - mm10.wgEncodeGencodeRefSeqVM24.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM24 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM24.transcriptId - mm10.wgEncodeGencodeAttrsVM24.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM24 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM24 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM24 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM24 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM24 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM24.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM24.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM24 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM24.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM24.transcriptId minCheck=0.90 - -# end Gencode VM24 - -# begin Gencode VM25 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM25 -# wgEncodeGencode2wayConsPseudoVM25 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM25 -identifier wgEncodeGencodeBasicAttrsVM25 -"Link together Gencode Basic Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM25.transcriptId - mm10.wgEncodeGencodeBasicVM25.name - -identifier wgEncodeGencodeCompAttrsVM25 -"Link together Gencode Comprehensive Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM25.transcriptId - mm10.wgEncodeGencodeCompVM25.name - -identifier wgEncodeGencodePseudoGeneAttrsVM25 -"Link together Gencode PseudoGene Table with Attributes table" - mm10.wgEncodeGencodeAttrsVM25.transcriptId - mm10.wgEncodeGencodePseudoGeneVM25.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM25) -identifier wgEncodeGencodeGeneSourceVM25 -"Link together Gencode Gene Source table with Attributes table" - mm10.wgEncodeGencodeGeneSourceVM25.geneId - mm10.wgEncodeGencodeAttrsVM25.geneId - -identifier wgEncodeGencodeGeneSymbolVM25 -"Link together Gencode gene symbol table with Attributes table" - mm10.wgEncodeGencodeGeneSymbolVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM25 -"Link together Gencode Pdb table with Attributes table" - mm10.wgEncodeGencodePdbVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM25 -"Link together Gencode Pubmed table with Attributes table" - mm10.wgEncodeGencodePubMedVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM25 -"Link together Gencode RefSeq table with Attributes table" - mm10.wgEncodeGencodeRefSeqVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM25 -"Link together Gencode RefSeq table with refGene track" - mm10.wgEncodeGencodeRefSeqVM25.rnaAcc dupeOk chopAfter=. - mm10.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM25 -"Link together Gencode Tag table with Attributes table" - mm10.wgEncodeGencodeTagVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.36 - mm10.wgEncodeGencodeRefSeqVM25.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM25 -"Link together Gencode Transcript Source table with Attributes table" - mm10.wgEncodeGencodeTranscriptSourceVM25.transcriptId - mm10.wgEncodeGencodeAttrsVM25.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM25 -"Link together Gencode Transcript Support table with Attributes table" - mm10.wgEncodeGencodeTranscriptSupportVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM25 -"Link together Gencode Transcription Support Level table with Attributes table" - mm10.wgEncodeGencodeTranscriptionSupportLevelVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM25 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeUniProtVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM25 -"Link together Gencode Annotation Remark table with Attributes table" - mm10.wgEncodeGencodeAnnotationRemarkVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM25 -"Link together Gencode UniProt Support table with Attributes table" - mm10.wgEncodeGencodeEntrezGeneVM25.transcriptId dupeOk - mm10.wgEncodeGencodeEntrezGeneVM25.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM25 -"Link together Gencode Exon Support table with Attributes table" - mm10.wgEncodeGencodeExonSupportVM25.transcriptId dupeOk - mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.90 - -# end Gencode VM25 - -# begin Gencode VM26 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM26 -# wgEncodeGencode2wayConsPseudoVM26 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM26 -identifier wgEncodeGencodeBasicAttrsVM26 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM26.transcriptId - mm39.wgEncodeGencodeBasicVM26.name - -identifier wgEncodeGencodeCompAttrsVM26 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM26.transcriptId - mm39.wgEncodeGencodeCompVM26.name - -identifier wgEncodeGencodePseudoGeneAttrsVM26 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM26.transcriptId - mm39.wgEncodeGencodePseudoGeneVM26.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM26) -identifier wgEncodeGencodeGeneSourceVM26 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM26.geneId - mm39.wgEncodeGencodeAttrsVM26.geneId - -identifier wgEncodeGencodeGeneSymbolVM26 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM26 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM26 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM26 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM26 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM26.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM26 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.36 - mm39.wgEncodeGencodeRefSeqVM26.transcriptId minCheck=0.9 - -identifier wgEncodeGencodeTranscriptSourceVM26 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM26.transcriptId - mm39.wgEncodeGencodeAttrsVM26.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM26 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.08 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM26 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM26 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM26 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM26 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM26.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM26.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM26 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM26.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.38 - -# end Gencode VM26 - -# begin Gencode VM27 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM27 -# wgEncodeGencode2wayConsPseudoVM27 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM27 -identifier wgEncodeGencodeBasicAttrsVM27 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM27.transcriptId - mm39.wgEncodeGencodeBasicVM27.name - -identifier wgEncodeGencodeCompAttrsVM27 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM27.transcriptId - mm39.wgEncodeGencodeCompVM27.name - -identifier wgEncodeGencodePseudoGeneAttrsVM27 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM27.transcriptId - mm39.wgEncodeGencodePseudoGeneVM27.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM27) -identifier wgEncodeGencodeGeneSourceVM27 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM27.geneId - mm39.wgEncodeGencodeAttrsVM27.geneId - -identifier wgEncodeGencodeGeneSymbolVM27 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM27 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM27 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM27 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM27 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM27.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM27 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM27 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM27.transcriptId - mm39.wgEncodeGencodeAttrsVM27.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM27 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM27 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM27 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM27 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM27 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM27.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM27.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM27 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM27.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM27.transcriptId minCheck=0.80 - -# end Gencode VM27 - -# begin Gencode VM28 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM28 -# wgEncodeGencode2wayConsPseudoVM28 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM28 -identifier wgEncodeGencodeBasicAttrsVM28 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM28.transcriptId - mm39.wgEncodeGencodeBasicVM28.name - -identifier wgEncodeGencodeCompAttrsVM28 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM28.transcriptId - mm39.wgEncodeGencodeCompVM28.name - -identifier wgEncodeGencodePseudoGeneAttrsVM28 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM28.transcriptId - mm39.wgEncodeGencodePseudoGeneVM28.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM28) -identifier wgEncodeGencodeGeneSourceVM28 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM28.geneId - mm39.wgEncodeGencodeAttrsVM28.geneId - -identifier wgEncodeGencodeGeneSymbolVM28 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM28 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM28 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.63 - -identifier wgEncodeGencodeRefSeqVM28 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM28 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM28.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM28 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM28 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM28.transcriptId - mm39.wgEncodeGencodeAttrsVM28.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM28 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM28 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM28 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM28 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM28 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM28.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM28.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM28 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM28.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM28.transcriptId minCheck=0.80 - -# end Gencode VM28 - -# begin Gencode VM29 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM29 -# wgEncodeGencode2wayConsPseudoVM29 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM29 -identifier wgEncodeGencodeBasicAttrsVM29 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM29.transcriptId - mm39.wgEncodeGencodeBasicVM29.name - -identifier wgEncodeGencodeCompAttrsVM29 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM29.transcriptId - mm39.wgEncodeGencodeCompVM29.name - -identifier wgEncodeGencodePseudoGeneAttrsVM29 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM29.transcriptId - mm39.wgEncodeGencodePseudoGeneVM29.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM29) -identifier wgEncodeGencodeGeneSourceVM29 +identifier wgEncodeGencodeGeneSource[${gencodeHg38Vers}] "Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM29.geneId - mm39.wgEncodeGencodeAttrsVM29.geneId + hg38.wgEncodeGencodeGeneSource[].geneId + hg38.wgEncodeGencodeAttrs[].geneId -identifier wgEncodeGencodeGeneSymbolVM29 +identifier wgEncodeGencodeGeneSymbol[${gencodeHg38GeneSymbolVers}] "Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.20 + hg38.wgEncodeGencodeGeneSymbol[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodePdbVM29 +identifier wgEncodeGencodePdb[${gencodeHg38Vers}] "Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.015 + hg38.wgEncodeGencodePdb[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.007 -identifier wgEncodeGencodePubMedVM29 +identifier wgEncodeGencodePubMed[${gencodeHg38Vers}] "Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.63 + hg38.wgEncodeGencodePubMed[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.40 -identifier wgEncodeGencodeRefSeqVM29 +identifier wgEncodeGencodeRefSeq[${gencodeHg38Vers}] "Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.05 + hg38.wgEncodeGencodeRefSeq[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.05 -identifier wgEncodeGencodeRefSeqToRefGeneVM29 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM29.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM29 +identifier wgEncodeGencodeTag[${gencodeHg38Vers}] "Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.36 + hg38.wgEncodeGencodeTag[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.36 -identifier wgEncodeGencodeTranscriptSourceVM29 +identifier wgEncodeGencodeTranscriptSource[${gencodeHg38Vers}] "Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM29.transcriptId - mm39.wgEncodeGencodeAttrsVM29.transcriptId + hg38.wgEncodeGencodeTranscriptSource[].transcriptId + hg38.wgEncodeGencodeAttrs[].transcriptId -identifier wgEncodeGencodeTranscriptSupportVM29 +identifier wgEncodeGencodeTranscriptSupport[${gencodeHg38Vers}] "Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.04 + hg38.wgEncodeGencodeTranscriptSupport[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.01 -identifier wgEncodeGencodeTranscriptionSupportLevelVM29 +identifier wgEncodeGencodeTranscriptionSupportLevel[${gencodeHg38Vers}] "Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.30 + hg38.wgEncodeGencodeTranscriptionSupportLevel[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.30 -identifier wgEncodeGencodeUniProtVM29 +identifier wgEncodeGencodeUniProt[${gencodeHg38Vers}] "Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.35 + hg38.wgEncodeGencodeUniProt[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodeAnnotationRemarkVM29 +identifier wgEncodeGencodeAnnotationRemark[${gencodeHg38Vers}] "Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.10 + hg38.wgEncodeGencodeAnnotationRemark[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.10 -identifier wgEncodeGencodeEntrezGeneVM29 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM29.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM29.transcriptId minCheck=0.35 +identifier wgEncodeGencodeEntrezGene[${gencodeHg38EntrezGeneVers}] +"Link together Gencode EntrezGene table with Attributes table" + hg38.wgEncodeGencodeEntrezGene[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.35 -identifier wgEncodeGencodeExonSupportVM29 +identifier wgEncodeGencodeExonSupport[${gencodeHg38Vers}] "Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM29.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM29.transcriptId minCheck=0.80 + hg38.wgEncodeGencodeExonSupport[].transcriptId dupeOk + hg38.wgEncodeGencodeAttrs[].transcriptId minCheck=0.50 -# end Gencode VM29 +## +# hg19 backmap (liftOver) — no ExonSupport in these releases +## -# begin Gencode VM30 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM30 -# wgEncodeGencode2wayConsPseudoVM30 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM30 -identifier wgEncodeGencodeBasicAttrsVM30 +identifier wgEncodeGencodeBasicAttrs[${gencodeHg19LiftVers}] "Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM30.transcriptId - mm39.wgEncodeGencodeBasicVM30.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodeBasic[].name -identifier wgEncodeGencodeCompAttrsVM30 +identifier wgEncodeGencodeCompAttrs[${gencodeHg19LiftVers}] "Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM30.transcriptId - mm39.wgEncodeGencodeCompVM30.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodeComp[].name -identifier wgEncodeGencodePseudoGeneAttrsVM30 +identifier wgEncodeGencodePseudoGeneAttrs[${gencodeHg19LiftVers}] "Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM30.transcriptId - mm39.wgEncodeGencodePseudoGeneVM30.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodePseudoGene[].name -# gencode association tables (joined through wgEncodeGencodeAttrsVM30) -identifier wgEncodeGencodeGeneSourceVM30 +identifier wgEncodeGencodeGeneSource[${gencodeHg19LiftVers}] "Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM30.geneId - mm39.wgEncodeGencodeAttrsVM30.geneId + hg19.wgEncodeGencodeGeneSource[].geneId dupeOk + hg19.wgEncodeGencodeAttrs[].geneId minCheck=0.99 -identifier wgEncodeGencodeGeneSymbolVM30 +identifier wgEncodeGencodeGeneSymbol[${gencodeHg19LiftGeneSymbolVers}] "Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.20 + hg19.wgEncodeGencodeGeneSymbol[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodePdbVM30 +identifier wgEncodeGencodePdb[${gencodeHg19LiftVers}] "Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.015 + hg19.wgEncodeGencodePdb[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.007 -identifier wgEncodeGencodePubMedVM30 +identifier wgEncodeGencodePubMed[${gencodeHg19LiftVers}] "Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.63 + hg19.wgEncodeGencodePubMed[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.40 -identifier wgEncodeGencodeRefSeqVM30 +identifier wgEncodeGencodeRefSeq[${gencodeHg19LiftVers}] "Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM30 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM30.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 + hg19.wgEncodeGencodeRefSeq[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.05 -identifier wgEncodeGencodeTagVM30 +identifier wgEncodeGencodeTag[${gencodeHg19LiftVers}] "Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.36 + hg19.wgEncodeGencodeTag[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.36 -identifier wgEncodeGencodeTranscriptSourceVM30 +identifier wgEncodeGencodeTranscriptSource[${gencodeHg19LiftVers}] "Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM30.transcriptId - mm39.wgEncodeGencodeAttrsVM30.transcriptId + hg19.wgEncodeGencodeTranscriptSource[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.99 -identifier wgEncodeGencodeTranscriptSupportVM30 +identifier wgEncodeGencodeTranscriptSupport[${gencodeHg19LiftVers}] "Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.04 + hg19.wgEncodeGencodeTranscriptSupport[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.01 -identifier wgEncodeGencodeTranscriptionSupportLevelVM30 +identifier wgEncodeGencodeTranscriptionSupportLevel[${gencodeHg19LiftVers}] "Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.30 + hg19.wgEncodeGencodeTranscriptionSupportLevel[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.30 -identifier wgEncodeGencodeUniProtVM30 +identifier wgEncodeGencodeUniProt[${gencodeHg19LiftVers}] "Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.35 + hg19.wgEncodeGencodeUniProt[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodeAnnotationRemarkVM30 +identifier wgEncodeGencodeAnnotationRemark[${gencodeHg19LiftVers}] "Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM30 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM30.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM30.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM30 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM30.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.80 + hg19.wgEncodeGencodeAnnotationRemark[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.10 -# end Gencode VM30 +identifier wgEncodeGencodeEntrezGene[${gencodeHg19LiftEntrezGeneVers}] +"Link together Gencode EntrezGene table with Attributes table" + hg19.wgEncodeGencodeEntrezGene[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.35 -# begin Gencode VM31 +identifier wgEncodeGencodeEntrezGene[${gencodeHg19LiftEntrezGeneLowVers}] +"Link together Gencode EntrezGene table with Attributes table (V26/V27lift37: near-empty table)" + hg19.wgEncodeGencodeEntrezGene[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.005 -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM31 +## +# mm39 +## -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM31 -identifier wgEncodeGencodeBasicAttrsVM31 +identifier wgEncodeGencodeBasicAttrs[${gencodeMm39Vers}] "Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM31.transcriptId - mm39.wgEncodeGencodeBasicVM31.name + mm39.wgEncodeGencodeAttrs[].transcriptId + mm39.wgEncodeGencodeBasic[].name -identifier wgEncodeGencodeCompAttrsVM31 +identifier wgEncodeGencodeCompAttrs[${gencodeMm39Vers}] "Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM31.transcriptId - mm39.wgEncodeGencodeCompVM31.name + mm39.wgEncodeGencodeAttrs[].transcriptId + mm39.wgEncodeGencodeComp[].name -identifier wgEncodeGencodePseudoGeneAttrsVM31 +identifier wgEncodeGencodePseudoGeneAttrs[${gencodeMm39Vers}] "Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM31.transcriptId - mm39.wgEncodeGencodePseudoGeneVM31.name + mm39.wgEncodeGencodeAttrs[].transcriptId + mm39.wgEncodeGencodePseudoGene[].name -# gencode association tables (joined through wgEncodeGencodeAttrsVM31) -identifier wgEncodeGencodeGeneSourceVM31 +identifier wgEncodeGencodeGeneSource[${gencodeMm39Vers}] "Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM31.geneId - mm39.wgEncodeGencodeAttrsVM31.geneId + mm39.wgEncodeGencodeGeneSource[].geneId + mm39.wgEncodeGencodeAttrs[].geneId -identifier wgEncodeGencodeGeneSymbolVM31 +identifier wgEncodeGencodeGeneSymbol[${gencodeMm39Vers}] "Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.20 + mm39.wgEncodeGencodeGeneSymbol[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodePdbVM31 +identifier wgEncodeGencodePdb[${gencodeMm39Vers}] "Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.015 + mm39.wgEncodeGencodePdb[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.007 -identifier wgEncodeGencodePubMedVM31 +identifier wgEncodeGencodePubMed[${gencodeMm39Vers}] "Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.63 + mm39.wgEncodeGencodePubMed[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.40 -identifier wgEncodeGencodeRefSeqVM31 +identifier wgEncodeGencodeRefSeq[${gencodeMm39Vers}] "Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM31 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM31.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 + mm39.wgEncodeGencodeRefSeq[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.05 -identifier wgEncodeGencodeTagVM31 +identifier wgEncodeGencodeTag[${gencodeMm39Vers}] "Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.36 + mm39.wgEncodeGencodeTag[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.36 -identifier wgEncodeGencodeTranscriptSourceVM31 +identifier wgEncodeGencodeTranscriptSource[${gencodeMm39Vers}] "Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM31.transcriptId - mm39.wgEncodeGencodeAttrsVM31.transcriptId + mm39.wgEncodeGencodeTranscriptSource[].transcriptId + mm39.wgEncodeGencodeAttrs[].transcriptId -identifier wgEncodeGencodeTranscriptSupportVM31 +identifier wgEncodeGencodeTranscriptSupport[${gencodeMm39Vers}] "Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.04 + mm39.wgEncodeGencodeTranscriptSupport[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.01 -identifier wgEncodeGencodeTranscriptionSupportLevelVM31 +identifier wgEncodeGencodeTranscriptionSupportLevel[${gencodeMm39Vers}] "Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.30 + mm39.wgEncodeGencodeTranscriptionSupportLevel[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.30 -identifier wgEncodeGencodeUniProtVM31 +identifier wgEncodeGencodeUniProt[${gencodeMm39Vers}] "Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.35 + mm39.wgEncodeGencodeUniProt[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodeAnnotationRemarkVM31 +identifier wgEncodeGencodeAnnotationRemark[${gencodeMm39Vers}] "Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.10 + mm39.wgEncodeGencodeAnnotationRemark[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.10 -identifier wgEncodeGencodeEntrezGeneVM31 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM31.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM31.transcriptId minCheck=0.35 +identifier wgEncodeGencodeEntrezGene[${gencodeMm39Vers}] +"Link together Gencode EntrezGene table with Attributes table" + mm39.wgEncodeGencodeEntrezGene[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.35 -identifier wgEncodeGencodeExonSupportVM31 +identifier wgEncodeGencodeExonSupport[${gencodeMm39Vers}] "Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM31.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM31.transcriptId minCheck=0.80 - -# end Gencode VM31 - -# begin Gencode VM32 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM32 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM32 -identifier wgEncodeGencodeBasicAttrsVM32 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM32.transcriptId - mm39.wgEncodeGencodeBasicVM32.name - -identifier wgEncodeGencodeCompAttrsVM32 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM32.transcriptId - mm39.wgEncodeGencodeCompVM32.name - -identifier wgEncodeGencodePseudoGeneAttrsVM32 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM32.transcriptId - mm39.wgEncodeGencodePseudoGeneVM32.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM32) -identifier wgEncodeGencodeGeneSourceVM32 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM32.geneId - mm39.wgEncodeGencodeAttrsVM32.geneId - -identifier wgEncodeGencodeGeneSymbolVM32 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM32 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.015 + mm39.wgEncodeGencodeExonSupport[].transcriptId dupeOk + mm39.wgEncodeGencodeAttrs[].transcriptId minCheck=0.38 -identifier wgEncodeGencodePubMedVM32 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.63 -identifier wgEncodeGencodeRefSeqVM32 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.05 +## +# RefSeqToRefGene macros (V24+ hg38, V24lift37+ hg19, VM26+ mm39). +# V23 and mm10 (VM13-VM25) kept literal below. +## -identifier wgEncodeGencodeRefSeqToRefGeneVM32 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeHg38RefSeqToRefGeneVers}] "Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM32.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM32 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM32 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM32.transcriptId - mm39.wgEncodeGencodeAttrsVM32.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM32 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.04 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM32 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM32 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM32 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM32 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM32.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM32.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM32 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM32.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM32.transcriptId minCheck=0.80 - -# end Gencode VM32 - -# begin Gencode VM33 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM33 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM33 -identifier wgEncodeGencodeBasicAttrsVM33 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM33.transcriptId - mm39.wgEncodeGencodeBasicVM33.name - -identifier wgEncodeGencodeCompAttrsVM33 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM33.transcriptId - mm39.wgEncodeGencodeCompVM33.name - -identifier wgEncodeGencodePseudoGeneAttrsVM33 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM33.transcriptId - mm39.wgEncodeGencodePseudoGeneVM33.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM33) -identifier wgEncodeGencodeGeneSourceVM33 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM33.geneId - mm39.wgEncodeGencodeAttrsVM33.geneId - -identifier wgEncodeGencodeGeneSymbolVM33 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM33 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM33 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.63 + hg38.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. + hg38.refGene.name minCheck=0.77 -identifier wgEncodeGencodeRefSeqVM33 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.05 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeHg38RefSeqToRefGeneLowVers}] +"Link together Gencode RefSeq table with refGene track (early releases with lower refGene coverage)" + hg38.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. + hg38.refGene.name minCheck=0.27 -identifier wgEncodeGencodeRefSeqToRefGeneVM33 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeHg19LiftRefSeqToRefGeneVers}] "Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM33.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM33 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM33 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM33.transcriptId - mm39.wgEncodeGencodeAttrsVM33.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM33 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM33 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM33 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM33 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM33 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM33.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM33.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM33 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM33.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM33.transcriptId minCheck=0.50 - -# end Gencode VM33 - -# begin Gencode VM34 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM34 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM34 -identifier wgEncodeGencodeBasicAttrsVM34 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM34.transcriptId - mm39.wgEncodeGencodeBasicVM34.name - -identifier wgEncodeGencodeCompAttrsVM34 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM34.transcriptId - mm39.wgEncodeGencodeCompVM34.name - -identifier wgEncodeGencodePseudoGeneAttrsVM34 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM34.transcriptId - mm39.wgEncodeGencodePseudoGeneVM34.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM34) -identifier wgEncodeGencodeGeneSourceVM34 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM34.geneId - mm39.wgEncodeGencodeAttrsVM34.geneId - -identifier wgEncodeGencodeGeneSymbolVM34 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM34 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.015 - -identifier wgEncodeGencodePubMedVM34 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.63 + hg19.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. + hg19.refGene.name minCheck=0.77 -identifier wgEncodeGencodeRefSeqVM34 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.05 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeHg19LiftRefSeqToRefGeneLowVers}] +"Link together Gencode RefSeq table with refGene track (early releases with lower refGene coverage)" + hg19.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. + hg19.refGene.name minCheck=0.27 -identifier wgEncodeGencodeRefSeqToRefGeneVM34 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeMm39RefSeqToRefGeneVers}] "Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM34.rnaAcc dupeOk chopAfter=. + mm39.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. mm39.refGene.name minCheck=0.77 -identifier wgEncodeGencodeTagVM34 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM34 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM34.transcriptId - mm39.wgEncodeGencodeAttrsVM34.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM34 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM34 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM34 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM34 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM34 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM34.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM34.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM34 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM34.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM34.transcriptId minCheck=0.50 - -# end Gencode VM34 -# begin Gencode VM35 +## +# hg19 direct (V7-V19) — legacy pre-hg38 releases +## -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM35 +set gencodeHg19Vers V7,V10,V11,V12,V14,V16,V17,V19 +set gencodeHg19ARTSLVers V10,V11,V12,V14,V16,V17,V19 -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM35 -identifier wgEncodeGencodeBasicAttrsVM35 +identifier wgEncodeGencodeBasicAttrs[${gencodeHg19Vers}] "Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM35.transcriptId - mm39.wgEncodeGencodeBasicVM35.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodeBasic[].name -identifier wgEncodeGencodeCompAttrsVM35 +identifier wgEncodeGencodeCompAttrs[${gencodeHg19Vers}] "Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM35.transcriptId - mm39.wgEncodeGencodeCompVM35.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodeComp[].name -identifier wgEncodeGencodePseudoGeneAttrsVM35 +identifier wgEncodeGencodePseudoGeneAttrs[${gencodeHg19Vers}] "Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM35.transcriptId - mm39.wgEncodeGencodePseudoGeneVM35.name + hg19.wgEncodeGencodeAttrs[].transcriptId + hg19.wgEncodeGencodePseudoGene[].name -# gencode association tables (joined through wgEncodeGencodeAttrsVM35) -identifier wgEncodeGencodeGeneSourceVM35 +identifier wgEncodeGencodeGeneSource[${gencodeHg19Vers}] "Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM35.geneId - mm39.wgEncodeGencodeAttrsVM35.geneId - -identifier wgEncodeGencodeGeneSymbolVM35 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.20 + hg19.wgEncodeGencodeGeneSource[].geneId + hg19.wgEncodeGencodeAttrs[].geneId -identifier wgEncodeGencodePdbVM35 +identifier wgEncodeGencodePdb[${gencodeHg19Vers}] "Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.015 + hg19.wgEncodeGencodePdb[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.02 -identifier wgEncodeGencodePubMedVM35 +identifier wgEncodeGencodePubMed[${gencodeHg19Vers}] "Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.63 + hg19.wgEncodeGencodePubMed[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.635488 -identifier wgEncodeGencodeRefSeqVM35 +identifier wgEncodeGencodeRefSeq[${gencodeHg19Vers}] "Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.05 + hg19.wgEncodeGencodeRefSeq[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.05 -identifier wgEncodeGencodeRefSeqToRefGeneVM35 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM35.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM35 +identifier wgEncodeGencodeTag[${gencodeHg19Vers}] "Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.36 + hg19.wgEncodeGencodeTag[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.373378 -identifier wgEncodeGencodeTranscriptSourceVM35 +identifier wgEncodeGencodeTranscriptSource[${gencodeHg19Vers}] "Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM35.transcriptId - mm39.wgEncodeGencodeAttrsVM35.transcriptId + hg19.wgEncodeGencodeTranscriptSource[].transcriptId + hg19.wgEncodeGencodeAttrs[].transcriptId -identifier wgEncodeGencodeTranscriptSupportVM35 +identifier wgEncodeGencodeTranscriptSupport[${gencodeHg19Vers}] "Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.02 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM35 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM35 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeAnnotationRemarkVM35 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.10 + hg19.wgEncodeGencodeTranscriptSupport[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.25 -identifier wgEncodeGencodeEntrezGeneVM35 +identifier wgEncodeGencodeUniProt[${gencodeHg19Vers}] "Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM35.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM35.transcriptId minCheck=0.35 + hg19.wgEncodeGencodeUniProt[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.358209 -identifier wgEncodeGencodeExonSupportVM35 +identifier wgEncodeGencodeExonSupport[${gencodeHg19Vers}] "Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM35.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM35.transcriptId minCheck=0.50 - -# end Gencode VM35 -# begin Gencode VM36 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM36 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM36 -identifier wgEncodeGencodeBasicAttrsVM36 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM36.transcriptId - mm39.wgEncodeGencodeBasicVM36.name - -identifier wgEncodeGencodeCompAttrsVM36 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM36.transcriptId - mm39.wgEncodeGencodeCompVM36.name - -identifier wgEncodeGencodePseudoGeneAttrsVM36 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM36.transcriptId - mm39.wgEncodeGencodePseudoGeneVM36.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM36) -identifier wgEncodeGencodeGeneSourceVM36 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM36.geneId - mm39.wgEncodeGencodeAttrsVM36.geneId - -identifier wgEncodeGencodeGeneSymbolVM36 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM36 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedVM36 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqVM36 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM36 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM36.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM36 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.36 - -identifier wgEncodeGencodeTranscriptSourceVM36 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM36.transcriptId - mm39.wgEncodeGencodeAttrsVM36.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM36 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.01 + hg19.wgEncodeGencodeExonSupport[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.98202 -identifier wgEncodeGencodeTranscriptionSupportLevelVM36 -"Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM36 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkVM36 +identifier wgEncodeGencodeAnnotationRemark[${gencodeHg19ARTSLVers}] "Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.10 - -identifier wgEncodeGencodeEntrezGeneVM36 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM36.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM36.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM36 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM36.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM36.transcriptId minCheck=0.50 - -# end Gencode VM36 - -# begin Gencode VM37 - -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM37 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM37 -identifier wgEncodeGencodeBasicAttrsVM37 -"Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM37.transcriptId - mm39.wgEncodeGencodeBasicVM37.name - -identifier wgEncodeGencodeCompAttrsVM37 -"Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM37.transcriptId - mm39.wgEncodeGencodeCompVM37.name - -identifier wgEncodeGencodePseudoGeneAttrsVM37 -"Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM37.transcriptId - mm39.wgEncodeGencodePseudoGeneVM37.name - -# gencode association tables (joined through wgEncodeGencodeAttrsVM37) -identifier wgEncodeGencodeGeneSourceVM37 -"Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM37.geneId - mm39.wgEncodeGencodeAttrsVM37.geneId - -identifier wgEncodeGencodeGeneSymbolVM37 -"Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodePdbVM37 -"Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.007 - -identifier wgEncodeGencodePubMedVM37 -"Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.40 - -identifier wgEncodeGencodeRefSeqVM37 -"Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.05 - -identifier wgEncodeGencodeRefSeqToRefGeneVM37 -"Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM37.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 - -identifier wgEncodeGencodeTagVM37 -"Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.36 + hg19.wgEncodeGencodeAnnotationRemark[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.10 -identifier wgEncodeGencodeTranscriptSourceVM37 -"Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM37.transcriptId - mm39.wgEncodeGencodeAttrsVM37.transcriptId - -identifier wgEncodeGencodeTranscriptSupportVM37 -"Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.01 - -identifier wgEncodeGencodeTranscriptionSupportLevelVM37 +identifier wgEncodeGencodeTranscriptionSupportLevel[${gencodeHg19ARTSLVers}] "Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.30 - -identifier wgEncodeGencodeUniProtVM37 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.20 - -identifier wgEncodeGencodeAnnotationRemarkVM37 -"Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.10 + hg19.wgEncodeGencodeTranscriptionSupportLevel[].transcriptId dupeOk + hg19.wgEncodeGencodeAttrs[].transcriptId minCheck=0.30 -identifier wgEncodeGencodeEntrezGeneVM37 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM37.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM37.transcriptId minCheck=0.35 - -identifier wgEncodeGencodeExonSupportVM37 -"Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM37.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM37.transcriptId minCheck=0.50 - -# end Gencode VM37 +## +# mm10 (VM2-VM25) — legacy pre-mm39 releases +## -# begin Gencode VM38 +set gencodeMm10Vers VM2,VM3,VM4,VM7,VM8,VM9,VM10,VM11,VM13,VM14,VM16,VM18,VM21,VM22,VM23,VM24,VM25 +set gencodeMm10EntrezGeneVers VM7,VM8,VM9,VM10,VM11,VM13,VM14,VM16,VM18,VM21,VM22,VM23,VM24,VM25 +set gencodeMm10RefSeqToRefGeneVers VM13,VM14,VM16,VM18,VM21,VM22,VM23,VM24,VM25 +set gencodeMm10GeneSymbolVers VM21,VM22,VM23,VM24,VM25 -# gencode genePred tables with no associations -# wgEncodeGencodePolyaVM38 - -# gencode genePred tables with joining through wgEncodeGencodeAttrsVM38 -identifier wgEncodeGencodeBasicAttrsVM38 +identifier wgEncodeGencodeBasicAttrs[${gencodeMm10Vers}] "Link together Gencode Basic Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM38.transcriptId - mm39.wgEncodeGencodeBasicVM38.name + mm10.wgEncodeGencodeAttrs[].transcriptId + mm10.wgEncodeGencodeBasic[].name -identifier wgEncodeGencodeCompAttrsVM38 +identifier wgEncodeGencodeCompAttrs[${gencodeMm10Vers}] "Link together Gencode Comprehensive Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM38.transcriptId - mm39.wgEncodeGencodeCompVM38.name + mm10.wgEncodeGencodeAttrs[].transcriptId + mm10.wgEncodeGencodeComp[].name -identifier wgEncodeGencodePseudoGeneAttrsVM38 +identifier wgEncodeGencodePseudoGeneAttrs[${gencodeMm10Vers}] "Link together Gencode PseudoGene Table with Attributes table" - mm39.wgEncodeGencodeAttrsVM38.transcriptId - mm39.wgEncodeGencodePseudoGeneVM38.name + mm10.wgEncodeGencodeAttrs[].transcriptId + mm10.wgEncodeGencodePseudoGene[].name -# gencode association tables (joined through wgEncodeGencodeAttrsVM38) -identifier wgEncodeGencodeGeneSourceVM38 +identifier wgEncodeGencodeGeneSource[${gencodeMm10Vers}] "Link together Gencode Gene Source table with Attributes table" - mm39.wgEncodeGencodeGeneSourceVM38.geneId - mm39.wgEncodeGencodeAttrsVM38.geneId + mm10.wgEncodeGencodeGeneSource[].geneId + mm10.wgEncodeGencodeAttrs[].geneId -identifier wgEncodeGencodeGeneSymbolVM38 +identifier wgEncodeGencodeGeneSymbol[${gencodeMm10GeneSymbolVers}] "Link together Gencode gene symbol table with Attributes table" - mm39.wgEncodeGencodeGeneSymbolVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.20 + mm10.wgEncodeGencodeGeneSymbol[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodePdbVM38 +identifier wgEncodeGencodePdb[${gencodeMm10Vers}] "Link together Gencode Pdb table with Attributes table" - mm39.wgEncodeGencodePdbVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.007 + mm10.wgEncodeGencodePdb[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.015 -identifier wgEncodeGencodePubMedVM38 +identifier wgEncodeGencodePubMed[${gencodeMm10Vers}] "Link together Gencode Pubmed table with Attributes table" - mm39.wgEncodeGencodePubMedVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.40 + mm10.wgEncodeGencodePubMed[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.63 -identifier wgEncodeGencodeRefSeqVM38 +identifier wgEncodeGencodeRefSeq[${gencodeMm10Vers}] "Link together Gencode RefSeq table with Attributes table" - mm39.wgEncodeGencodeRefSeqVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.05 + mm10.wgEncodeGencodeRefSeq[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.05 -identifier wgEncodeGencodeRefSeqToRefGeneVM38 +identifier wgEncodeGencodeRefSeqToRefGene[${gencodeMm10RefSeqToRefGeneVers}] "Link together Gencode RefSeq table with refGene track" - mm39.wgEncodeGencodeRefSeqVM38.rnaAcc dupeOk chopAfter=. - mm39.refGene.name minCheck=0.77 + mm10.wgEncodeGencodeRefSeq[].rnaAcc dupeOk chopAfter=. + mm10.refGene.name minCheck=0.77 -identifier wgEncodeGencodeTagVM38 +identifier wgEncodeGencodeTag[${gencodeMm10Vers}] "Link together Gencode Tag table with Attributes table" - mm39.wgEncodeGencodeTagVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.36 + mm10.wgEncodeGencodeTag[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.36 -identifier wgEncodeGencodeTranscriptSourceVM38 +identifier wgEncodeGencodeTranscriptSource[${gencodeMm10Vers}] "Link together Gencode Transcript Source table with Attributes table" - mm39.wgEncodeGencodeTranscriptSourceVM38.transcriptId - mm39.wgEncodeGencodeAttrsVM38.transcriptId + mm10.wgEncodeGencodeTranscriptSource[].transcriptId + mm10.wgEncodeGencodeAttrs[].transcriptId -identifier wgEncodeGencodeTranscriptSupportVM38 +identifier wgEncodeGencodeTranscriptSupport[${gencodeMm10Vers}] "Link together Gencode Transcript Support table with Attributes table" - mm39.wgEncodeGencodeTranscriptSupportVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.01 + mm10.wgEncodeGencodeTranscriptSupport[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.20 -identifier wgEncodeGencodeTranscriptionSupportLevelVM38 +identifier wgEncodeGencodeTranscriptionSupportLevel[${gencodeMm10Vers}] "Link together Gencode Transcription Support Level table with Attributes table" - mm39.wgEncodeGencodeTranscriptionSupportLevelVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.30 + mm10.wgEncodeGencodeTranscriptionSupportLevel[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.30 -identifier wgEncodeGencodeUniProtVM38 +identifier wgEncodeGencodeUniProt[${gencodeMm10Vers}] "Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeUniProtVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.20 + mm10.wgEncodeGencodeUniProt[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.358209 -identifier wgEncodeGencodeAnnotationRemarkVM38 +identifier wgEncodeGencodeAnnotationRemark[${gencodeMm10Vers}] "Link together Gencode Annotation Remark table with Attributes table" - mm39.wgEncodeGencodeAnnotationRemarkVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.10 + mm10.wgEncodeGencodeAnnotationRemark[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.10 -identifier wgEncodeGencodeEntrezGeneVM38 -"Link together Gencode UniProt Support table with Attributes table" - mm39.wgEncodeGencodeEntrezGeneVM38.transcriptId dupeOk - mm39.wgEncodeGencodeEntrezGeneVM38.transcriptId minCheck=0.35 +identifier wgEncodeGencodeEntrezGene[${gencodeMm10EntrezGeneVers}] +"Link together Gencode EntrezGene table with Attributes table" + mm10.wgEncodeGencodeEntrezGene[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.35 -identifier wgEncodeGencodeExonSupportVM38 +identifier wgEncodeGencodeExonSupport[${gencodeMm10Vers}] "Link together Gencode Exon Support table with Attributes table" - mm39.wgEncodeGencodeExonSupportVM38.transcriptId dupeOk - mm39.wgEncodeGencodeAttrsVM38.transcriptId minCheck=0.50 + mm10.wgEncodeGencodeExonSupport[].transcriptId dupeOk + mm10.wgEncodeGencodeAttrs[].transcriptId minCheck=0.90 -# end Gencode VM38 +# end GENCODE macro-driven definitions identifier wgEncodeGencodeClassesV3Hg19 "Link together Gencode gene model (Known) and class for July 2009 Data Version" hg19.wgEncodeGencodeClassesV3.name hg19.wgEncodeGencodeAutoV3.name unique hg19.wgEncodeGencodeManualV3.name unique hg19.wgEncodeGencodePolyaV3.name unique identifier acemblyName dependency "Link together Acembly gene model structure and peptide." $hg,$mm.acembly.name $hg,!hg17,$mm.acemblyPep.name unique minCheck=0.90 hg17.acemblyPep.name unique minCheck=0.63 $hg,$mm.acemblyClass.name full unique