5e83632c91c1c536880da1e364a41467856135bd
markd
  Tue Sep 22 11:02:32 2026 -0700
Rename the TSS container and trim the ProCapNet description. refs #35528

Both labels on the transcriptionStart container are now "Transcription
Initiation (TSS)". Changed in proCapNetTrackDb and the two transcriptionStart.ra
files regenerated from it, since they are generated and carry a do-not-edit
header.

Dropped the Processing at UCSC section from the ProCapNet page. How the files
reached UCSC is not something a browser user needs; the makeDoc already records
it, including the NaN bases dropped from the hg38 predictions.

Replaced the Kundaje lab server link with the ENCODE portal. The six ENCODE
records are BPNet-model annotations holding the trained model, contribution
scores and predicted signal over a selected region set. The genome-wide
predictions in this track are roughly fifty times larger than the ENCODE
predicted-signal files and are not part of that release, so the page says so
rather than naming ENCODE as their source.

Claude-Session: https://claude.ai/code/session_01LAB6jWshLvB7eNXQKWVuW5

diff --git src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra
index f3264ee4a80..c40801e5c20 100644
--- src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra
+++ src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra
@@ -1,22 +1,22 @@
 # Generated by hg/makeDb/outside/proCapNet/proCapNetTrackDb for hg38.
 # Do not edit by hand, edit the script and regenerate.
 
 track transcriptionStart
 superTrack on show
-shortLabel TSS
-longLabel Experimental and computational evidence for transcription start sites (TSS)
+shortLabel Transcription Initiation (TSS)
+longLabel Transcription Initiation (TSS)
 group rna
 
     track encode4ProCap
     parent transcriptionStart
     compositeTrack faceted
     type bigWig
     shortLabel PRO-cap
     longLabel PRO-cap nascent RNA transcription start sites from ENCODE 4
     metaDataUrl /gbdb/hg38/encode4ProCap/metadata.tsv
     colorSettingsUrl /gbdb/hg38/encode4ProCap/colors.json
     primaryKey Cell_line
     dataTypes procap|"PRO-cap"
     subtrackUrls Experiment=https://www.encodeproject.org/experiments/$$/ Files=https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4ProCap/$$
     defaultSortField Cell_line
     maxCheckboxes 50