bea3a22e1454e8fee62a026ffcec8c57af4005be markd Sat Jun 6 13:46:13 2026 -0700 added -tsv option blastToPsl and blastXmlToPsl to allow parsing scores with other programs diff --git src/hg/blastToPsl/tests/expected/mrna1TsvTest.tsv src/hg/blastToPsl/tests/expected/mrna1TsvTest.tsv new file mode 100644 index 00000000000..c099efd18c0 --- /dev/null +++ src/hg/blastToPsl/tests/expected/mrna1TsvTest.tsv @@ -0,0 +1,13 @@ +strand qName qStart qEnd tName tStart tEnd bitScore eVal qDef tDef ++ NM_004676.2 410 1238 chrY 24659956 24660784 1530.15 0 NM_004676.2 chrY +- NM_004676.2 173 297 chrY 19856418 19856525 91.6061 1.90943e-17 NM_004676.2 chrY ++ NM_004676.2 173 297 chrY 20323249 20323356 91.6061 1.90943e-17 NM_004676.2 chrY +- NM_001003895.1 0 1918 chrY 26192243 26194161 3542.99 0 NM_001003895.1 chrY ++ NM_001003895.1 1958 2362 chrY 27954274 27954681 316.897 5.58476e-85 NM_001003895.1 chrY ++ NM_001003895.1 1959 2362 chrY 23860555 23860959 279.964 7.32729e-74 NM_001003895.1 chrY +- NM_001003895.1 1959 2366 chrY 9002836 9003247 274.424 3.40906e-72 NM_001003895.1 chrY +- RC_NM_004676.2 0 828 chrY 24659956 24660784 1530.15 0 RC_NM_004676.2 chrY ++ RC_NM_004676.2 1150 1238 chrY 6268515 6268603 147.006 4.01787e-34 RC_NM_004676.2 chrY +- RC_NM_004676.2 1150 1238 chrY 9601766 9601854 147.006 4.01787e-34 RC_NM_004676.2 chrY ++ RC_NM_004676.2 941 1065 chrY 19856418 19856525 91.6061 1.90943e-17 RC_NM_004676.2 chrY +- RC_NM_004676.2 941 1065 chrY 20323249 20323356 91.6061 1.90943e-17 RC_NM_004676.2 chrY