c177d102b0a4e3e72f82a3dc5f5adbdc0fe3f53d
markd
  Wed Dec 31 09:35:36 2025 -0800
fixed wierd language or typo that seems to be from copying description from various places outside of the browser code

diff --git src/hg/makeDb/trackDb/human/hs1/html/sedefSegDups.html src/hg/makeDb/trackDb/human/hs1/html/sedefSegDups.html
index 75e1281f459..6ea3c2425c5 100644
--- src/hg/makeDb/trackDb/human/hs1/html/sedefSegDups.html
+++ src/hg/makeDb/trackDb/human/hs1/html/sedefSegDups.html
@@ -1,43 +1,42 @@
 <h2>Description</h2>
 A track showing segmental duplications as generated by <a href="https://github.com/vpc-ccg/sedef">sedef</a> on the assembly: T2T-CHM13-v2.0
 Column descriptions can be found here: <a href="https://github.com/vpc-ccg/sedef#output">columns</a>.
 
 <h2>Display Conventions and Configuration</h2>
 This section describes track configuration controls, or any special display conventions such as the
 meaning of different colors in your tracks. 
 
 <p>
-The colours used for level of similary
-segmentation standard:
+The following colors are used to distinguish levels of similarity:
 </p>
 <table>
   <tr><td>less than 90% similarity<td style="background-color:Purple; color:White">Purple</tr>
   <tr><td>90 - 98% similarity<td style="background-color:Gray; color:White">Light to dark gray</tr>
   <tr><td>98 - 99% similarity<td style="background-color:Yellow">Yellow</tr>
   <tr><td>greater than 99% similarity<td style="background-color:Orange">Orange</tr>
 </table>
 
 <h2>Methods</h2>
 <p>
 Sedef was run with default parameters on a RepeatMasked genome assembly.
 The resulting output (final.bed) was then converted into a browser friendly format (bed9 + extra fields).
 </p>
 
 <h2>Credits</h2>
 <ul>
   <li> <a href="mailto:mvollger@uw.edu"> Mitchell R. Vollger &lt;mvollger@uw.edu&gt;</a>, University of Washington
 </ul>
 
 <h2>References</h2>
 <p>
   M. R. Vollger et al., Segmental duplications and their variation in a complete
   human genome. Science. 2022 April 1; eabj6965. DOI: 10.1126/science.abj6965
 </p>
 Numanagic I, G&#246;kkaya AS, Zhang L, Berger B, Alkan C, Hach F.
 <a href="https://www.ncbi.nlm.nih.gov/pubmed/30423092" target="_blank">
 Fast characterization of segmental duplications in genome assemblies</a>.
 <em>Bioinformatics</em>. 2018 Sep 1;34(17):i706-i714.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30423092" target="_blank">30423092</a>;
 PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129265/" target="_blank">PMC6129265</a>
 </p>