31e95f0d1dd4ca08feba9b081a356527bd4b45e6 markd Sat Sep 26 20:36:20 2026 -0700 Drop the hand-built Files column from the TSS faceted tables. refs #35528 UCSC will generate the download links in the faceted table, so the Files column each composite built for itself is redundant. Remove downloadCell, the Files header and cell, the Files entry in subtrackUrls, and the DOWNLOAD constant that only fed them. The table is now Tissue, Sample class, Experiment, Cell line on all three composites. writeMetadata no longer needs db or track; the metadata files it writes are byte-identical. Lead each Data Access section with the link to the hgdownload directory, since that is now the way to a single file, and keep the naming convention beside it. Drop the paragraph describing the Files column. diff --git src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra index c96c928b15b..d9ddd11813f 100644 --- src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra +++ src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra @@ -1,230 +1,230 @@ # Generated by hg/makeDb/outside/proCapNet/proCapNetTrackDb for hs1. # Do not edit by hand, edit the script and regenerate. track transcriptionStart superTrack on show shortLabel Transcription Initiation (TSS) longLabel Transcription initiation (TSS) group rna track proCapNet parent transcriptionStart compositeTrack faceted type bigWig shortLabel ProCapNet longLabel ProCapNet predicted PRO-cap metaDataUrl /gbdb/hs1/proCapNet/metadata.tsv colorSettingsUrl /gbdb/hs1/proCapNet/colors.json primaryKey Cell_line dataTypes pred|"Predicted PRO-cap" - subtrackUrls Experiment=https://www.encodeproject.org/annotations/$$/ Files=https://hgdownload.soe.ucsc.edu/gbdb/hs1/proCapNet/$$ + subtrackUrls Experiment=https://www.encodeproject.org/annotations/$$/ defaultSortField Cell_line maxCheckboxes 50 noInherit on visibility hide priority 2 track proCapNet_A673_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 0,114,178 shortLabel A673 Predicted longLabel A673 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 1 track proCapNet_A673_pred_pos parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.pos.bw color 0,114,178 shortLabel A673 Predicted + longLabel A673 ProCapNet predicted PRO-cap, plus strand track proCapNet_A673_pred_neg parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.neg.bw color 0,114,178 altColor 0,114,178 negateValues on shortLabel A673 Predicted - longLabel A673 ProCapNet predicted PRO-cap, minus strand track proCapNet_Caco-2_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 213,94,0 shortLabel Caco-2 Predicted longLabel Caco-2 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 2 track proCapNet_Caco-2_pred_pos parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.pos.bw color 213,94,0 shortLabel Caco-2 Predicted + longLabel Caco-2 ProCapNet predicted PRO-cap, plus strand track proCapNet_Caco-2_pred_neg parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.neg.bw color 213,94,0 altColor 213,94,0 negateValues on shortLabel Caco-2 Predicted - longLabel Caco-2 ProCapNet predicted PRO-cap, minus strand track proCapNet_Calu3_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 0,158,115 shortLabel Calu3 Predicted longLabel Calu3 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 3 track proCapNet_Calu3_pred_pos parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.pos.bw color 0,158,115 shortLabel Calu3 Predicted + longLabel Calu3 ProCapNet predicted PRO-cap, plus strand track proCapNet_Calu3_pred_neg parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.neg.bw color 0,158,115 altColor 0,158,115 negateValues on shortLabel Calu3 Predicted - longLabel Calu3 ProCapNet predicted PRO-cap, minus strand track proCapNet_HUVEC_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 204,121,167 shortLabel HUVEC Predicted longLabel HUVEC ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 4 track proCapNet_HUVEC_pred_pos parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.pos.bw color 204,121,167 shortLabel HUVEC Predicted + longLabel HUVEC ProCapNet predicted PRO-cap, plus strand track proCapNet_HUVEC_pred_neg parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.neg.bw color 204,121,167 altColor 204,121,167 negateValues on shortLabel HUVEC Predicted - longLabel HUVEC ProCapNet predicted PRO-cap, minus strand track proCapNet_K562_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 230,159,0 shortLabel K562 Predicted longLabel K562 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 5 track proCapNet_K562_pred_pos parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.pos.bw color 230,159,0 shortLabel K562 Predicted + longLabel K562 ProCapNet predicted PRO-cap, plus strand track proCapNet_K562_pred_neg parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.neg.bw color 230,159,0 altColor 230,159,0 negateValues on shortLabel K562 Predicted - longLabel K562 ProCapNet predicted PRO-cap, minus strand track proCapNet_MCF10A_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum color 86,180,233 shortLabel MCF10A Predicted longLabel MCF10A ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 6 track proCapNet_MCF10A_pred_pos parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.pos.bw color 86,180,233 shortLabel MCF10A Predicted + longLabel MCF10A ProCapNet predicted PRO-cap, plus strand track proCapNet_MCF10A_pred_neg parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.neg.bw color 86,180,233 altColor 86,180,233 negateValues on shortLabel MCF10A Predicted - longLabel MCF10A ProCapNet predicted PRO-cap, minus strand