d0ddd717713f275dc2f567c9b6d733fd3f55bd90 markd Fri Oct 2 21:27:25 2026 -0700 Put PRO-cap and ProCapNet inside a Transcription Initiation folder. refs #35528 The two data sources were top-level superTracks because a superTrack could not be a member of another one. #38460 fixes that, so they now sit inside a transcriptionStart superTrack, which is what the collection was meant to be. The container is written before either of its children, and both children before any of their members: tdbQuery -strict rejects a file in which another track comes between a superTrack and one of its children. This depends on the #38460 build. A plain make here with the installed binaries produces a half-built state, since hgTrackDb drops the container from the table and trackDbToTxt then writes an hs1 curated hub whose member names a parent stanza that is not there. Both makedocs say so. diff --git src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra index 5b27fca253f..e3b08cd3824 100644 --- src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra +++ src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra @@ -1,213 +1,220 @@ # Generated by hg/makeDb/outside/proCapNet/proCapNetTrackDb for hs1. # Do not edit by hand, edit the script and regenerate. +track transcriptionStart +superTrack on show +group rna +shortLabel Transcription Initiation (TSS) +longLabel Transcription initiation (TSS) + track proCapNet superTrack on show + parent transcriptionStart group rna shortLabel ProCapNet longLabel ProCapNet predicted PRO-cap track proCapNet_A673_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 0,114,178 shortLabel A673 Predicted longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, plus up minus down priority 1 track proCapNet_A673_pred_pos parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.pos.bw color 0,114,178 shortLabel A673 Predicted + longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, plus strand track proCapNet_A673_pred_neg parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.neg.bw color 0,114,178 altColor 0,114,178 shortLabel A673 Predicted - longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, minus strand track proCapNet_Caco-2_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 213,94,0 shortLabel Caco-2 Predicted longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, plus up minus down priority 2 track proCapNet_Caco-2_pred_pos parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.pos.bw color 213,94,0 shortLabel Caco-2 Predicted + longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, plus strand track proCapNet_Caco-2_pred_neg parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.neg.bw color 213,94,0 altColor 213,94,0 shortLabel Caco-2 Predicted - longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, minus strand track proCapNet_Calu3_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 0,158,115 shortLabel Calu3 Predicted longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, plus up minus down priority 3 track proCapNet_Calu3_pred_pos parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.pos.bw color 0,158,115 shortLabel Calu3 Predicted + longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, plus strand track proCapNet_Calu3_pred_neg parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.neg.bw color 0,158,115 altColor 0,158,115 shortLabel Calu3 Predicted - longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, minus strand track proCapNet_HUVEC_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 204,121,167 shortLabel HUVEC Predicted longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, plus up minus down priority 4 track proCapNet_HUVEC_pred_pos parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.pos.bw color 204,121,167 shortLabel HUVEC Predicted + longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, plus strand track proCapNet_HUVEC_pred_neg parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.neg.bw color 204,121,167 altColor 204,121,167 shortLabel HUVEC Predicted - longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, minus strand track proCapNet_K562_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 230,159,0 shortLabel K562 Predicted longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, plus up minus down priority 5 track proCapNet_K562_pred_pos parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.pos.bw color 230,159,0 shortLabel K562 Predicted + longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, plus strand track proCapNet_K562_pred_neg parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.neg.bw color 230,159,0 altColor 230,159,0 shortLabel K562 Predicted - longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, minus strand track proCapNet_MCF10A_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 86,180,233 shortLabel MCF10A Predicted longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, plus up minus down priority 6 track proCapNet_MCF10A_pred_pos parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.pos.bw color 86,180,233 shortLabel MCF10A Predicted + longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, plus strand track proCapNet_MCF10A_pred_neg parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.neg.bw color 86,180,233 altColor 86,180,233 shortLabel MCF10A Predicted - longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, minus strand